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#transcriptomics — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #transcriptomics, aggregated by home.social.

  1. 🧬 Could a single metric decode how genes are regulated across cells?

    🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0044

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

  2. 🧬 Could a single metric decode how genes are regulated across cells?

    🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0044

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

  3. 🧬 Could a single metric decode how genes are regulated across cells?

    🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0044

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

  4. 🧬 Could a single metric decode how genes are regulated across cells?

    🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0044

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

  5. 🧬 Could a single metric decode how genes are regulated across cells?

    🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0044

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

  6. Is spatial transcriptomics data preprocessing giving you a headache? You're not alone! 🤯
    Join our webinar designed for new researchers to simplify the complex world of image-based spatial omics. We'll walk through the practical workflow step-by-step, from initial cell segmentation to cleaning up your data.
    Get the foundational skills you need. 📅 Sign up here: t1p.de/lqbg1

    #Transcriptomics #SpatialTranscriptomics #Omics #DataScience #ResearchWebinar #GHGA #ELIXIR #deNBI

  7. The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
    galaxyproject.org/news/2025-10

    @galaxyfreiburg
    #UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

  8. The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
    galaxyproject.org/news/2025-10

    @galaxyproject
    #UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

  9. CW: Long Hashtag List for the Life Sciences

    Life Sciences Hashtags

    • Animal Behaviour
    #AnimalBehavior #AnimalBehaviour #AnimalCognition #AnimalPsychology #AnimalResearch #AnimalSocieties #AnimalStudies #BehavioralEcology #BehaviouralEcology #BehavioralScience #BehaviouralScience #CameraTraps #ComparativeCognition #CriticalAnimalStudies #Learning #Memory #PositiveReinforcement #Sociobiology #TrailCam

    • Astrobiology
    #AlienLife #Astrobiology #Biosignatures #Cryosphere DeepIce #EarthScience #Exoplanets #GeoScience #Habitability #Karst #MicroHabitats #OceanWorlds #OriginOfLife #PlanetaryCaves #PlanetaryScience

    • Behaviour Science
    #AnthroZoology #Behavior #Behaviour #Behaviour2023 #BehavioralScience #BehaviouralScience #Biopsychology #CognitiveDevelopment #ComparativeCognition #DevelopmentalPsychology #Ethology #Learning #Memory #Neuroethology #PhilosophyOfMind #PleasureActivism #Psychology #SelfOrganisation #SelfOrganization #SocialNetwork

    • Biochemistry | Group: @biochemistry
    #Actin #AminoAcids #Biochemical #Biochemistry #Catalyst #Catalysis #DNA #Enzyme #Enzymes #Hormones #IonChannels #Kinetics #Metabolism #Metabolomics #mRNA #Peptides #Polymer #Protein #Proteins #RNA

    • Bioinformatics | Group: @bioinformatics
    #BigData #Bioinformatics #RStats

    • Biology | Group: [email protected]
    #Biochemistry #Biology #Biomes #Botany #Ecology #Ecosystem #Evolution #Genetics #Habitat #LifeCycle #MarineBiology #Microbiology #Zoology

    • Biomaterial Science
    #Biofilm #Biofilms #Biologics #Biomaterials #Biotechnology #MaterialsScience #Nanotechnology #SustainableDesign #SyntheticBiology

    • Biomedical Science
    #Biomedical #BiomedicalEngineering #BiomedicalScience #NetworkMedicine #SystemsBiology

    • Botany
    #Botany #Botanical #Botanist #FloraIncognita #Florespondence IAmABotanist #Phenology #PlantBiology #PlantCells #PlantID #PlantIdentification

    • Cell Biology | Group: @cellbiology
    #CellBiology #CellDivision #CellMigration #Chloroplast #Cilium #Cytoskeleton #EndoplasmicReticulum #Eukaryotes #Golgi #Lipids #Macrophages #Membrane #Membranes #Microtubules #Mitochondria #Nucleus #Organelle #Organoids #Ribosome #SingleCell

    • Developmental Biology
    #ChildDevelopment #Connectome #Connectomics #DevelopmentalBiology #Embryology #Embryos #EvoDevo #GeneRegulation #Pregnancy #Proteomics #ReproSci #SexDet #StemCells #Transcriptomics

    • Ecology | Group: @ecology
    #AgroEcology #BehavioralEcology #BehaviouralEcology #Biodiversity #BiodiversityCrisis #BiodiversityLoss #Biogeography #ConservationBiology #Ecocide #EcoGrief #Ecological #EcologicalMonitoring #EcologicalSurvey #Ecology #Ecosystem #ForestEcology #Habitat #InvasionEcology #InvasiveSpecies #MassExtinction #OldGrowth #Riparian #WildCounts

    • Entomology | Group: @entomology
    #Beetles #Bugs #Coleoptera #Crustaceans #Entomologia #Entomology #Hemiptera #Hymenoptera #iNaturalist #Insect #Insects #InsectPhotography #Invertebrates #Isopods #Lepidoptera #Metamorphosis #Orthoptera #Pupa #Taxonomy

    • Genetics
    #BasePair #CellDivision #Chromosome #Chromosomes #Clone #Epigenetics #DNA #Gene #GeneExpression #GeneRegulation #GeneticallyModified #Genetics #Genome #Genomics #GMO #Meiosis #Mitosis #Mutation #RNAseq #Telomeres #Variants

    • Immunology
    #Antibodies #Antibody #Antigen #AutoImmune #BCells #Immune #ImmuneSystem #Immunity #ImmunoCompromised #Immunology #ImmunoTherapy #Interferon #Macrophages #Monoclonal #MonoclonalAntibodies (#mAbs) #Neutrophils #TCell #Vaccinated #Vaccine #Viralimmunology

    • Marine Science
    #Acidification #Algae #Aquatic #Cetaceans #Coral #CoralBleaching #CoralReefs #DeepSea #Diatoms #Estuary #Eutrophication #Kelp #KelpForest #MarineBiology #MarineLife #MarineMammals #MarineScience #MarineTaxonomy #Oceanography #Oceans #OceanWarming #Phytoplankton #Reefs #SeaBed #SeaFloor #SeaGrass #Seaweed #ScubaDiving #Snorkeling #UnderWaterPhotography #Zooplankton

    • Microbiology | Group: @microbiology
    #Antibiotics #AntiMicrobial #AntiMicrobialResistance (#AMR) #Bacteria #Bacterial #Bacteriophage #Bacteriology #Cilia #Microbes #Microbial #MicrobialEcology #Microbiology #Microbiome #Microbiota #MicroOrganisms #Phage #Protists

    #EColi #Legionella #Pseudomonas #Salmonella #Streptomyces

    • Molecular Biology | Group: @molecularbiology
    #Biophysics #CellBiology #MolecularBiology #MolecularEvolution #ProteinEngineering #ProteinStructure #Proteomics #StructuralBiology

    • Mycology | Group: @mycology
    #Fungi #Fungiverse #Mushrooms #Mycelium #Mycologists #Mycology #Mycophile #Spores #Sporespondence

    • Ornithology | Group: @ornithology
    #BirdID #Birding #BirdMigration #BirdPhotography #BirdResearch #BirdsOfMastodon #Corvid #eBird #Migration #Nesting #Oology #Ornithology #Raptor #SeaBirds #ShoreBirds

    • Virology | Group: @virology
    #AntiViral #AvianFlu #Bacteriophage #BirdFlu #CoronaVirus #COVID #COVID19 #GiantViruses #HIV #InfectiousDisease #Ebola #Measles #Phage #SARS #SARSCoV2 #Vaccine #Vaccines #ViralLoad #Viralimmunology #ViralPersistence #Variants #Virology #Virome #Virus #Viruses

    • Zoology
    #Animals #Biology #Zoologist #Zoology

    (Click to access Scientists in the Formal, Natural & Social Sciences)

    (See Index for More Hashtags)

    #SciFedi #LifeSciences

  10. Curious about the dark side of plant biology?

    Check out our latest preprint on the secrets of black pigmentation in Rubus:

    doi.org/10.64898/2026.05.05.72

    #Anthocyanins #Transcriptomics #PlantScience #Fruits
    @PuckerLab

  11. CDKN2A-p16 Deletion and Activated KRASG12D Drive Barrett’s-Like Gland Hyperplasia-Metaplasia and Synergize in the Development of Dysplasia Precancer Lesions. doi.org/10.1016/j.jcmgh.2024.0

  12. 🧬 What if disease isn’t written in DNA, but in how RNA is edited and spliced?

    🔗 Long-Read Sequencing Reveals RNA Splicing Complexity in Human Diseases. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0052

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #RNASequencing #Genomics #Transcriptomics #PrecisionMedicine #MolecularBiology #Bioinformatics #NextGenSequencing #RNA #DNA

  13. At #PAG33? Stop by the Galaxy booth to get snacks and talk with us about how we can help you get FREE, reproduceable, publishable high performance computing workflows. #Assembly, #Transcriptomics, #Epigenetics, and much more!

  14. Our review article got published in 'Biotechnology Advances':

    "Decoding bioprocesses with transcriptomics: current status and future potential"
    doi.org/10.1016/j.biotechadv.2

    #Biotech #ScaleUp #ScaleDown #Transcriptomics
    @PuckerLab

  15. 🧬 Can a single method balance sensitivity and specificity in small RNA annotation across the tree of life?

    🔗 Class-agnostic annotation of small RNAs balances sensitivity and specificity in diverse organisms. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.csbj.2025.05

    📚 CSBJ: csbj.org/

    #RNA #Bioinformatics #Genomics #SmallRNAs #ComputationalBiology #Transcriptomics #MolecularBiology #Epigenetics

  16. Postdoc Position: Evolution and Organization of Ant Olfactory Systems
    Johannes Gutenberg University Mainz

    PostDoc position @uni Mainz (Germany)
    #genomics #transcriptomics to investigate the olfactory system of ants

    See the full job description on jobRxiv: jobrxiv.org/job/johannes-guten...
    jobrxiv.org/job/johannes-guten

  17. My son, Ronan, who is double-majoring in #biochemistry and #physics, is working at Georgetown University in DC this summer, on a #cancer research internship. His work focuses on #cell-type #deconvolution in spatial #transcriptomics.

    I know nothing about biology, but I am assisting him with deconvolution. My MathsTodon friends, have you any guidance to offer, either in mathematics or in biology?

  18. The #eye is famously a well-accessible extension of the brain. So why not looking into eyes to find out about brain disorders? For #schizophrenia this may become possible as retinal cells are affected. #genomics #transcriptomics jamanetwork.com/journals/jamap

  19. 📰 Aujourd'hui, Gwenaelle nous partage l'histoire des technologies de transcriptomique : comment faisait-on avant l'ère bénie du séquençage haut débit 🤔
    bioinfo-fr.net/expression-de-g
    #bioinfofr #transcriptomics

  20. A genetic barcoding system lets scientists tag and track cells, making it easier than ever to map gene expression (#transcriptomics) and decode behaviour.
    elifesciences.org/reviewed-pre

  21. new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" doi.org/10.1038/s41598-025-855

    "our study shows that collaborative network analysis approaches are well-suited to study rare diseases, as they provide hypotheses for pathogenic mechanisms from multiple perspectives."

    #bioinformatics #huntingtons #transcriptomics #rareDisease

  22. Casey Brown was a great scientist and an amazing person. He could always make time to catch up with junior people, give encouragement or just joke about pretty much everything.

    Now in his honour some of the leading scientist in #genomics and #complextraits have joint to record the Casey Brown #lectures.

    From the basics of human #genetics, to #transcriptomics #epigenetics or #machinelearning for genomics. All free to watch.

    m.youtube.com/playlist?list=PL

  23. Cancer cells may change their mechanical properties and thus become able to invade other tissues, i.e. to metastasize. This paper identifies a small network of key genes that tune cell mechanics. elifesciences.org/reviewed-pre #machinelearning #transcriptomics #cancer

  24. Greetings to i3L students and all life sciences enthusiasts!

    i3L proudly presents another episode of Power Talk!

    Special in December 2024 Power Talk, i3L proudly invites an expert: Rizky Nurdiansyah .,M.Si (PhD Candidate at Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT))

    Register Here: link : lnkd.in/gVxJ7v5c

    We're looking forward to seeing you! 🙏 🙏 🙏
    metagenomics #i3L #biotechnology #biomedicine #genomics #transcriptomics

  25. Some really great talks and discussions today on advances in virus-livestock omics at the #Turing institute, who kindly supported the event. Talks include those by Ge Wu and Marie Di Placido (pictures) from the #Pirbright Institute.

    Great to have input from the #BBSRC and #SFTC #Harttree Centre too.

    Looking forward to new adventures in this area...

    #livestock #virus #genomics #antibody #genome #mutation #pangenome #omics #transcriptomics #spatialtranscriptomics #fmdv

  26. Last chance to register for our meeting "Advancing virus-livestock omics" on Thurs 28th Sept at the Alan Turing Institute.

    Registration closes end of Mon 25th.

    See turing.ac.uk/events/advancing-

    Register here: t.ly/wYA7d

    Schedule below

    Zoom stream possible for those from further afield

    #livestock #virus #genomics #antibody #genome #mutation #pangenome #omics #transcriptomics #spatialtranscriptomics #fmdv

  27. Here is another highly valuable #openaccess resource combining cellular gene expression and morphological profile data. Marzieh Haghighi and colleagues at the Broad Institute measured roughly 1,000 features for each of the two data types, across more than 28,000 chemical and genetic perturbations.

    Article in Nature Methods: nature.com/articles/s41592-022

    Data on #github: github.com/carpenterlab/2021_H

    #geneexpression #transcriptomics #phenotypic #multimodal #datascience #artificialintelligence