#transcriptomics — Public Fediverse posts

https://www.europesays.com/uk/989281/ Gene-expression patterns can be used to estimate mortality risk and chronological age – Nature #Ageing #ComputationalBiologyAndBioinformatics #Health #HumanitiesAndSocialSciences #multidisciplinary #Science #Transcriptomics #UK #UnitedKingdom

🧬 Could a single metric decode how genes are regulated across cells?

🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0044

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

🧬 Could a single metric decode how genes are regulated across cells?

🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0044

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

🧬 Could a single metric decode how genes are regulated across cells?

🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0044

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

🧬 Could a single metric decode how genes are regulated across cells?

🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0044

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

🧬 Could a single metric decode how genes are regulated across cells?

🔗 Regulation Ratio: A Singular Multi-Omic Measurement of Gene Regulatory Mechanisms. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0044

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#GeneRegulation #Genomics #MultiOmics #SystemsBiology #Bioinformatics #ComputationalBiology #MolecularBiology #RNA #GeneExpression #Epigenetics #Transcriptomics

How could bisphenol A raise depression risk? Study identifies six key molecular targets

Researchers combined genetic epidemiology, transcriptomics, molecular docking, and mous…
#NewsBeep #News #Health #AU #Australia #Blood #Cell #Chemicals #depression #depressivedisorder #ELISA #Endocrine #epidemiology #estrogen #Gene #GeneExpression #Genetic #Kinase #majordepressivedisorder #Mentalhealth #protein #psychiatry #publichealth #Receptor #research #Transcriptomics
https://www.newsbeep.com/au/577535/

How could bisphenol A raise depression risk? Study identifies six key molecular targets

Researchers combined genetic epidemiology, transcriptomics, molecular docking, and mous…
#NewsBeep #News #Health #AU #Australia #Blood #Cell #Chemicals #depression #depressivedisorder #ELISA #Endocrine #epidemiology #estrogen #Gene #GeneExpression #Genetic #Kinase #majordepressivedisorder #Mentalhealth #protein #psychiatry #publichealth #Receptor #research #Transcriptomics
https://www.newsbeep.com/au/577535/

https://www.europesays.com/ie/414176/ How could bisphenol A raise depression risk? Study identifies six key molecular targets #blood #Cell #chemicals #Depression #DepressiveDisorder #Éire #ELISA #Endocrine #Epidemiology #estrogen #Gene #GeneExpression #Genetic #Health #IE #Ireland #Kinase #MajorDepressiveDisorder #MentalHealth #Protein #Psychiatry #PublicHealth #Receptor #Research #Transcriptomics

Is spatial transcriptomics data preprocessing giving you a headache? You're not alone! 🤯
Join our webinar designed for new researchers to simplify the complex world of image-based spatial omics. We'll walk through the practical workflow step-by-step, from initial cell segmentation to cleaning up your data.
Get the foundational skills you need. 📅 Sign up here: https://t1p.de/lqbg1

#Transcriptomics #SpatialTranscriptomics #Omics #DataScience #ResearchWebinar #GHGA #ELIXIR #deNBI

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

Bioinformatician @lgatto

UCLouvain

UCLouvain is hiring a #bioinformatician for the e-OMIX project

See the full job description on jobRxiv: https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

#cross_platform #data_analyses #Data_Science #FHIR #genomics #proteomics #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

Bioinformatician @lgatto

UCLouvain

UCLouvain is hiring a #bioinformatician for the e-OMIX project

See the full job description on jobRxiv: https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

#cross_platform #data_analyses #Data_Science #FHIR #genomics #proteomics #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

Bioinformatician @lgatto

UCLouvain

UCLouvain is hiring a #bioinformatician for the e-OMIX project

See the full job description on jobRxiv: https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

#cross_platform #data_analyses #Data_Science #FHIR #genomics #proteomics #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

Bioinformatician @lgatto

UCLouvain

UCLouvain is hiring a #bioinformatician for the e-OMIX project

See the full job description on jobRxiv: https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

#cross_platform #data_analyses #Data_Science #FHIR #genomics #proteomics #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

Bioinformatician @lgatto

UCLouvain

UCLouvain is hiring a #bioinformatician for the e-OMIX project

See the full job description on jobRxiv: https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

#cross_platform #data_analyses #Data_Science #FHIR #genomics #proteomics #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/uclouvain-27778-bioinformatician/?feed_id=68846

Curious about the dark side of plant biology?

Check out our latest preprint on the secrets of black pigmentation in Rubus:

https://doi.org/10.64898/2026.05.05.723051

#Anthocyanins #Transcriptomics #PlantScience #Fruits
@PuckerLab

https://www.europesays.com/uk/754232/ New spatial omics platform advances biomedical research in Spain #Bioinformatics #Cancer #CLARITY #EU #Europe #Gene #Genes #Genomic #Genomics #Histopathology #ImmuneSystem #Medicine #Microscopy #Neurodegeneration #NextGeneration #PrecisionMedicine #Protein #ProteinAnalysis #proteomics #Research #SamplePreparation #Spain #Technology #TopDown #Transcriptomics

https://www.europesays.com/ie/329335/ New spatial omics platform advances biomedical research in Spain #Bioinformatics #cancer #CLARITY #Éire #Gene #Genes #Genomic #genomics #Histopathology #IE #ImmuneSystem #Ireland #medicine #Microscopy #Neurodegeneration #NextGeneration #PrecisionMedicine #Protein #ProteinAnalysis #Proteomics #Research #SamplePreparation #Science #Technology #TopDown #Transcriptomics

New spatial omics platform advances biomedical research in Spain https://www.byteseu.com/1788012/ #Bioinformatics #Cancer #clarity #GENE #Genes #Genomic #genomics #Histopathology #ImmuneSystem #Medicine #Microscopy #Neurodegeneration #NextGeneration #PrecisionMedicine #Protein #ProteinAnalysis #Proteomics #Research #SamplePreparation #Spain #Technology #TopDown #Transcriptomics

CDKN2A-p16 Deletion and Activated KRASG12D Drive Barrett’s-Like Gland Hyperplasia-Metaplasia and Synergize in the Development of Dysplasia Precancer Lesions. https://doi.org/10.1016/j.jcmgh.2024.01.014 #Dysplasia #EsophagealAdenocarcinoma #3dOrganoids #Transcriptomics

🧬 What if disease isn’t written in DNA, but in how RNA is edited and spliced?

🔗 Long-Read Sequencing Reveals RNA Splicing Complexity in Human Diseases. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0052

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#RNASequencing #Genomics #Transcriptomics #PrecisionMedicine #MolecularBiology #Bioinformatics #NextGenSequencing #RNA #DNA

"Cellular morphology emerges from polygenic, distributed transcriptional variation", Paylakhi et al. 2026
https://www.biorxiv.org/content/10.64898/2026.03.12.711281v1

#CellBiology #transcriptomics #CellPainting #RNAseq

At #PAG33? Stop by the Galaxy booth to get snacks and talk with us about how we can help you get FREE, reproduceable, publishable high performance computing workflows. #Assembly, #Transcriptomics, #Epigenetics, and much more!

Research Associate
University of Ottawa

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-ottawa-27778-research-associate-2/

#cellbiology #molecularbiology #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-ottawa-27778-research-associate-2/?fsp_sid=4260

Our review article got published in 'Biotechnology Advances':

"Decoding bioprocesses with transcriptomics: current status and future potential"
https://doi.org/10.1016/j.biotechadv.2025.108736

#Biotech #ScaleUp #ScaleDown #Transcriptomics
@PuckerLab

🧬 Can a single method balance sensitivity and specificity in small RNA annotation across the tree of life?

🔗 Class-agnostic annotation of small RNAs balances sensitivity and specificity in diverse organisms. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.045

📚 CSBJ: https://www.csbj.org/

#RNA #Bioinformatics #Genomics #SmallRNAs #ComputationalBiology #Transcriptomics #MolecularBiology #Epigenetics

Postdoc Position: Evolution and Organization of Ant Olfactory Systems
Johannes Gutenberg University Mainz

PostDoc position @uni Mainz (Germany)
#genomics #transcriptomics to investigate the olfactory system of ants

See the full job description on jobRxiv: https://jobrxiv.org/job/johannes-gutenberg-university-mainz-27778-postdoc-position-evolu...
https://jobrxiv.org/job/johannes-gutenberg-university-mainz-27778-postdoc-position-evolution-and-organization-of-ant-olfactory-systems/?fsp_sid=550

My son, Ronan, who is double-majoring in #biochemistry and #physics, is working at Georgetown University in DC this summer, on a #cancer research internship. His work focuses on #cell-type #deconvolution in spatial #transcriptomics.

I know nothing about biology, but I am assisting him with deconvolution. My MathsTodon friends, have you any guidance to offer, either in mathematics or in biology?

"Scalable image-based visualization and alignment of spatial transcriptomics datasets", by Preibisch et al. 2025 @preibischs
https://www.sciencedirect.com/science/article/pii/S2405471225000973
#transcriptomics #BioimageInformatics

Landscape #transcriptomics may give insight into what #stresses wild #bees.

#RNA #conservation #AI #genomics #conservation #bumblebees #Bombus #funded_by_USDA #funded_by_us

https://phys.org/news/2025-03-landscape-transcriptomics-insight-stresses-wild.html

Last time teaching Applied Plant Transcriptomics at TU Braunschweig 🌱🧬
Slides & resources: https://github.com/bpucker/AppliedPlantTranscriptomics
#Bioinformatics #Transcriptomics
@PuckerLab

Pipeline release! nf-core/molkart v1.1.0 - 1.1.0 - Resolution Road!

Please see the changelog: https://github.com/nf-core/molkart/releases/tag/1.1.0

#fish #imageprocessing #imaging #molecularcartography #segmentation #singlecell #spatial #transcriptomics #nfcore #openscience #nextflow #bioinformatics

Key #genes for #corn #architecture revealed, identifying future #breeding targets.

#agriculture #food-security #genomics #gene_regulation #pleiotropy #transcription_factors #transcriptomics #funded_by_NSF #funded_by_us

https://phys.org/news/2025-03-key-genes-corn-architecture-revealed.html

The #eye is famously a well-accessible extension of the brain. So why not looking into eyes to find out about brain disorders? For #schizophrenia this may become possible as retinal cells are affected. #genomics #transcriptomics https://jamanetwork.com/journals/jamapsychiatry/fullarticle/2829092

📰 Aujourd'hui, Gwenaelle nous partage l'histoire des technologies de transcriptomique : comment faisait-on avant l'ère bénie du séquençage haut débit 🤔
https://bioinfo-fr.net/expression-de-gene-evolution
#bioinfofr #transcriptomics

Interesting opportunity!
A permanent position as an Associate Professor in #Zoology is available
at the #NaturalHistoryMuseum #University of Oslo. #MuseumJobs #EvolutionaryBiology, #comparativegenomics #Transcriptomics #Systematics #populationgenomics

https://www.jobbnorge.no/en/available-jobs/job/268410/associate-professor-in-zoology

deadline February 23rd 2025

A genetic barcoding system lets scientists tag and track cells, making it easier than ever to map gene expression (#transcriptomics) and decode behaviour.
https://elifesciences.org/reviewed-preprints/88334?utm_source=mastodon&utm_medium=social&utm_campaign=organic

new paper: "A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease" https://doi.org/10.1038/s41598-025-85580-4

"our study shows that collaborative network analysis approaches are well-suited to study rare diseases, as they provide hypotheses for pathogenic mechanisms from multiple perspectives."

#bioinformatics #huntingtons #transcriptomics #rareDisease

Casey Brown was a great scientist and an amazing person. He could always make time to catch up with junior people, give encouragement or just joke about pretty much everything.

Now in his honour some of the leading scientist in #genomics and #complextraits have joint to record the Casey Brown #lectures.

From the basics of human #genetics, to #transcriptomics #epigenetics or #machinelearning for genomics. All free to watch.

https://m.youtube.com/playlist?list=PLlV97eYP56rATGyRK4SSHVXyJjVxPGth_

Cancer cells may change their mechanical properties and thus become able to invade other tissues, i.e. to metastasize. This paper identifies a small network of key genes that tune cell mechanics. https://elifesciences.org/reviewed-preprints/87930 #machinelearning #transcriptomics #cancer

Greetings to i3L students and all life sciences enthusiasts!

i3L proudly presents another episode of Power Talk!

Special in December 2024 Power Talk, i3L proudly invites an expert: Rizky Nurdiansyah .,M.Si (PhD Candidate at Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT))

Register Here: link : https://lnkd.in/gVxJ7v5c

We're looking forward to seeing you! 🙏 🙏 🙏
metagenomics #i3L #biotechnology #biomedicine #genomics #transcriptomics

Some really great talks and discussions today on advances in virus-livestock omics at the #Turing institute, who kindly supported the event. Talks include those by Ge Wu and Marie Di Placido (pictures) from the #Pirbright Institute.

Great to have input from the #BBSRC and #SFTC #Harttree Centre too.

Looking forward to new adventures in this area...

#livestock #virus #genomics #antibody #genome #mutation #pangenome #omics #transcriptomics #spatialtranscriptomics #fmdv​

Last chance to register for our meeting "Advancing virus-livestock omics" on Thurs 28th Sept at the Alan Turing Institute.

Registration closes end of Mon 25th.

See https://www.turing.ac.uk/events/advancing-virus-livestock-omics

Register here: https://t.ly/wYA7d

Schedule below

Zoom stream possible for those from further afield

#livestock #virus #genomics #antibody #genome #mutation #pangenome #omics #transcriptomics #spatialtranscriptomics #fmdv

Recruitment 2024! We are looking for #PhDstudents in the fields of #Bioinformatics #molecularbiology #Genomics #computationalBiology #transcriptomics. https://www.uni-goettingen.de/de/application/556704.html Deadline for application is January 26, 2024! @eCampus_unigoe

Single-cell #transcriptomics of human liver #organoids stratify models of #metabolic dysfunction-associated steatosis #MASLD
Anja Hess, Alan Mullen et al
https://www.embopress.org/doi/full/10.15252/embj.2023113898

Here is another highly valuable #openaccess resource combining cellular gene expression and morphological profile data. Marzieh Haghighi and colleagues at the Broad Institute measured roughly 1,000 features for each of the two data types, across more than 28,000 chemical and genetic perturbations.

Article in Nature Methods: https://www.nature.com/articles/s41592-022-01667-0

Data on #github: https://github.com/carpenterlab/2021_Haghighi_NatureMethods

#geneexpression #transcriptomics #phenotypic #multimodal #datascience #artificialintelligence

Placing a list of hashtags of interest in your profile keeps them conveniently located for future use, but they won't return your profile to someone else's search using those same terms. If you want people to find you through your common interests, then you will need to place that hashing list inside a post, like so.

#biochemistry #molecularbiology #enzymes #genomics #transcriptomics #metabolomics #bioinformatics #entomology #plants #plantbiology #plantphysiology #plantpathology #plantdisease #planthealth #onehealth #lignin #mycology #secondaryproducts #xylem #woodformation #trees #forests #forestry #pulpandpaper #agriculture #cropprotection #integratedpestmanagement #IPM #controlledenvironmentagriculture #verticalfarming #graduateeducation #scicomm #Georgia #Mississippi #Wyoming