#computationalbiology — Public Fediverse posts

If you are interested in how AI can support the development of scientific software, I invite you to attend my workshop at the 71st Annual Meeting of the Biophysical Society in Philadelphia.

On February 23, 2027, at 7:30 PM, I will present “Developing Scientific Software with AI: Opportunities, Practices, and Pitfalls for Biophysicists.”

I am grateful for the invitation and look forward to the discussion.

See you at #BPS2027 #Biophysics #AI #ComputationalBiology

Postdoctoral Scholar
University of Washington

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/

#appliedmath #bayesian #computationalbiology #hematology #Laboratorymedicine #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/?fsp_sid=15291

Postdoctoral Scholar
University of Washington

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/

#appliedmath #bayesian #computationalbiology #hematology #Laboratorymedicine #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/?fsp_sid=15291

Postdoctoral Scholar
University of Washington

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/

#appliedmath #bayesian #computationalbiology #hematology #Laboratorymedicine #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/?fsp_sid=15291

Postdoctoral Scholar
University of Washington

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/

#appliedmath #bayesian #computationalbiology #hematology #Laboratorymedicine #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/?fsp_sid=15291

Postdoctoral Scholar
University of Washington

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/

#appliedmath #bayesian #computationalbiology #hematology #Laboratorymedicine #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-washington-27778-postdoctoral-scholar-2/?fsp_sid=15291

Xenobots are microscopic, programmable biological machines constructed entirely from living cells without any genetic modification. Measuring less than a millimeter, they lack traditional mechanical parts and are entirely organic, biodegradable, and derived primarily from embryonic stem cells of the African clawed frog (Xenopus laevis).
#WhatIs #EvolutionaryBiology #DevelopmentalBiology #SyntheticBiology #ComputationalBiology #SoftRobotics
https://www.sflorg.com/2026/05/wi05172601.html

A newly decoded, gene-encoded blueprint functions as a spatial "wiring map" that guides growing nerve fibers (axons) to connect with the precise target regions in the developing brain.
#Neuroscience #Genetics #ComputationalBiology #DevelopmentalBiology #sflorg
https://www.sflorg.com/2026/05/ns05142601.html

"I Am Rejected" – The harsh reality for many biotech graduates after job apps.
Hundreds of applications, multiple rejections, missing computational skills.
Upgrade now with BioResire: https://whatsapp.com/channel/0029Vb5u2Tp77qVTb1D7bu3r

#BiotechJobs #BioResire #JobRejection #BiotechGraduates #ComputationalBiology #Bioinformatics #IndiaBiotech #LifeScienceJobs #PhDBiotech #BiotechCareers #SkillUpgrade #JobSearchIndia #BiotechSkills #ResearchJobs #BioinformaticsTraining #STEMJobs #WhatsAppCommunity #BioResireStudents

Lakh packages in bioinformatics? Yes—with right skills!
Genomics, NGS, AI tools unlock pharma & research jobs.
Join students: https://whatsapp.com/channel/0029Vb5u2Tp77qVTb1D7bu3r

#BioinformaticsJobs #BioResire #HighPackage #BioinformaticsSalary #IndiaBioinformatics #BiotechJobs #NGSData #GenomicsJobs #LifeSciences #PharmaCareers #ResearchJobs #AIinBioinfo #BioinformaticsSkills #BioResireStudents #LakhPackage #BioTechSalary #ComputationalBiology #BioinformaticsIndia #WhatsAppCommunity #CareerHighSalary

💊 Can understanding receptor bias help us design safer, more selective GPCR drugs?

🔗 Biased activation of the vasopressin V2 receptor probed by molecular dynamics simulations, NMR and pharmacological studies. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.10.039

📚 CSBJ: https://www.csbj.org/

#GPCR #StructuralBiology #MolecularDynamics #NMR #Pharmacology #ProteinStructure #DrugDiscovery #ComputationalBiology #CellSignaling

🧬 Can a single method balance sensitivity and specificity in small RNA annotation across the tree of life?

🔗 Class-agnostic annotation of small RNAs balances sensitivity and specificity in diverse organisms. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.045

📚 CSBJ: https://www.csbj.org/

#RNA #Bioinformatics #Genomics #SmallRNAs #ComputationalBiology #Transcriptomics #MolecularBiology #Epigenetics

✍️ New Bioconductor blog post on EuroBioC2024 conference recap. Check it out here: https://buff.ly/3zfMh2Z

#EuroBioC2024 #BioconductorCommunity #Bioinformatics #ComputationalBiology #RStats #OpenSource

✍️ New Bioconductor blog post on BioC2024 conference recap. Check it out here: https://buff.ly/3SKdaT3

#BioC2024
#BioconductorCommunity #Bioinformatics #ComputationalBiology #RStats #OpenSource

✍️ New Bioconductor blog post on the inaugural Bioconductor Athena Award winner, Beatriz Calvo-Serra. Check it out here: https://buff.ly/3YnFAWx

#BioconductorCommunity #Bioinformatics #RStats #ComputationalBiology #ScienceAwards

Now Katie Pollard from UCSF
https://docpollard.org/

Resolving single-cell regulatory elements across species and contexts with CellWalker2

lab builds #statistical models and #ComputationalBiology tools
#neuroscience

did microdissection then single-cell ATAC-seq
developed CellWalker to solve challenges in resolving regulatory elements
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02279-1

#GeneExpression
#genomics
#SingleCell
#CSSingleCells23

1/2

First speaker: Jingyi Jessica Li, UCLA
http://jsb.ucla.edu/

Enhancing #statistical rigor in single-cell data analysis using synthetic negative controls

"In #genomics, the negative control is often not so obvious"

How to choose null hypothesis? question is often "too abstract for biologists" 🤓

Now discussing (infamous) problems with dubious use of t-SNE

developed tool called scDEED
https://www.biorxiv.org/content/10.1101/2023.04.21.537839v1

#CSSingleCells23
#ComputationalBiology
#statistics

1/2

Now Neda Bagheri at U of Washington
https://www.bagherilab.com/

Emulating emergent spatio-temporal cell population dynamics with #machinelearning algorithms remains challenging

Population dynamics arise from autonomous #SingleCell decisions
e.g. in context of #cancer progression

Created tool called ARCADE = Agent-based Representation of Cells And Dynamic Environments
https://bagherilab.com/resources.php

But model is computationally expensive...
1/2

#ComputationalBiology
#SystemsBiology
#CSSingleCells23

After a day trying this out I decided to do a proper #introduction. I never was an active twitter user but this is looking much more interesting to me.

I'm 26 years old. I'm a PhD student at the #UniversidadDeValparaiso , #Chile While my native tongue is Chilean Spanish I tend to keep my online accounts in English.

*Research topics* I study #Biophysics and #ComputationalBiology. I do #MolecularDynamics simulations of #CarbonNanomaterials and #BioMolecules, mostly with #GROMOS .

*Computer stuff* I'm an #Emacs enthusiast running #doomemacs . #linux daily driver. I know #python and some #julia and I'm learning a bit of #C++ and #elisp . Recently got into keyboards and switched to a moonlander (split kb) and the #colemakdh layout .

*Hobbies* As you might've guessed, I'm into nerdy stuff. I dabble into #ttrpg (prefer #pathfinder 2e rather than #DnD) and #tcg (Primarily #digimon, and recently #marvelsnap). I read a ton of #manga and sometimes watch #anime. I play videogames on both #pc and #nintendo #switch