#bioinformatics — Public Fediverse posts

Pipeline release! nf-core/pixelator v4.1.0 - nf-core/pixelator 4.1.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Fetal monitoring for high-risk pregnancies using a wearable ultrasound patch

Woodward, P. J., Kennedy, A. & Sohaey, R. Diagnostic Imaging: Obstetrics 4th edn (Elsevier, 2021). Hutter, D., Kingdom,…
#NewsBeep #News #Healthcare #Agriculture #AU #Australia #bioinformatics #Biomedicalengineering #BiomedicalEngineering/Biotechnology #Biomedicine #Biotechnology #general #Health #LifeSciences #Pregnancyoutcome #Reproductivedisorders
https://www.newsbeep.com/au/696140/

Fetal monitoring for high-risk pregnancies using a wearable ultrasound patch

Woodward, P. J., Kennedy, A. & Sohaey, R. Diagnostic Imaging: Obstetrics 4th edn (Elsevier, 2021). Hutter, D., Kingdom,…
#NewsBeep #News #Healthcare #Agriculture #AU #Australia #bioinformatics #Biomedicalengineering #BiomedicalEngineering/Biotechnology #Biomedicine #Biotechnology #general #Health #LifeSciences #Pregnancyoutcome #Reproductivedisorders
https://www.newsbeep.com/au/696140/

And now for the much needed good news of the day... the development of #MyGNUHealth 3.0 is going at a good pace 😎
Some screenshots of the ongoing porting process to Ubuntu touch from @volla tablet.
#OpenScience #GNU #GNUHealth #UbuntuTouch #bioinformatics #SocialMedicine #FreeSoftware #privacy #Volla

And now for the much needed good news of the day... the development of #MyGNUHealth 3.0 is going at a good pace 😎
Some screenshots of the ongoing porting process to Ubuntu touch from @volla tablet.
#OpenScience #GNU #GNUHealth #UbuntuTouch #bioinformatics #SocialMedicine #FreeSoftware #privacy #Volla

And now for the much needed good news of the day... the development of #MyGNUHealth 3.0 is going at a good pace 😎
Some screenshots of the ongoing porting process to Ubuntu touch from @volla tablet.
#OpenScience #GNU #GNUHealth #UbuntuTouch #bioinformatics #SocialMedicine #FreeSoftware #privacy #Volla

And now for the much needed good news of the day... the development of #MyGNUHealth 3.0 is going at a good pace 😎
Some screenshots of the ongoing porting process to Ubuntu touch from @volla tablet.
#OpenScience #GNU #GNUHealth #UbuntuTouch #bioinformatics #SocialMedicine #FreeSoftware #privacy #Volla

And now for the much needed good news of the day... the development of #MyGNUHealth 3.0 is going at a good pace 😎
Some screenshots of the ongoing porting process to Ubuntu touch from @volla tablet.
#OpenScience #GNU #GNUHealth #UbuntuTouch #bioinformatics #SocialMedicine #FreeSoftware #privacy #Volla

📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery

⏳ Submission Deadline: 31 December 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics

#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine

📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery

⏳ Submission Deadline: 31 December 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics

#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0!
Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)
Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

#molecularpixelation #pixelator #pixelgentechnologies #proteins #singlecell #singlecellomics #nfcore #openscience #nextflow #bioinformatics

🔬 High‑res microscopes now flood labs with petabytes of images.

💡 Researchers are building an AI assistant that scans these massive datasets, spots patterns and pulls out the biologically relevant features—cutting down weeks of manual work to minutes.

🚀 This could speed discoveries in cell biology, pathology and beyond.

#AI #Microscopy #BigData #Bioinformatics #OpenScience

🔗 https://news.google.com/rss/articles/CBMiigFBVV95cUxOSFViY2VvMHhVRmpmTUxLSGctcTBMWE9LeElHUVg2LVl4MlZxODVLN20wY0hYbXVzTFlhYWNvUkNHUHNNMmZTQW5NV1NhOFRaaVF1dGc5d0Q5YUtBazh2ZURZcWtZR0xneDlieVdTWmp5UmtaQVhLLWJQUXd3dTAxcE9vMHNLSHB2Unc?oc=5

https://t.me/GlobalWFeed

🦠 Could decoding bacterial regulatory proteins help us stay ahead of drug resistance?

🔗 Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0100

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Microbiology #MolecularBiology #Bioinformatics #AntimicrobialResistance #DrugDiscovery #ProteinEngineering #StructuralBiology #Genomics #ComputationalBiology

🦠 Could decoding bacterial regulatory proteins help us stay ahead of drug resistance?

🔗 Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0100

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Microbiology #MolecularBiology #Bioinformatics #AntimicrobialResistance #DrugDiscovery #ProteinEngineering #StructuralBiology #Genomics #ComputationalBiology

🦠 Could decoding bacterial regulatory proteins help us stay ahead of drug resistance?

🔗 Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0100

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Microbiology #MolecularBiology #Bioinformatics #AntimicrobialResistance #DrugDiscovery #ProteinEngineering #StructuralBiology #Genomics #ComputationalBiology

🦠 Could decoding bacterial regulatory proteins help us stay ahead of drug resistance?

🔗 Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0100

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Microbiology #MolecularBiology #Bioinformatics #AntimicrobialResistance #DrugDiscovery #ProteinEngineering #StructuralBiology #Genomics #ComputationalBiology

🦠 Could decoding bacterial regulatory proteins help us stay ahead of drug resistance?

🔗 Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0100

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#Microbiology #MolecularBiology #Bioinformatics #AntimicrobialResistance #DrugDiscovery #ProteinEngineering #StructuralBiology #Genomics #ComputationalBiology

the middle east war is upstream of your compute budget, most researchers just haven't traced the chain yet.
helium for chip cooling comes substantially from qatar. disrupted. bromine for circuit etching comes largely from israel. surged to $12k/ton. chip packaging at 60% capacity for 2026.
if you run large-scale analyses you're downstream of this. idk why we don't talk about it.

#bioinformatics #geopolitics #linux #foss #hpc

🧠 What if missing data is not a flaw, but one of the most informative parts of a complex system?

🔗 Informative Missingness in Nominal Data: A Graph-Theoretic Approach to Revealing Hidden Structure. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0099

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#DataScience #BigData #GraphTheory #ComputationalBiology #NetworkScience #Bioinformatics #SystemsBiology #BiomedicalResearch #MissingData

🧠 What if missing data is not a flaw, but one of the most informative parts of a complex system?

🔗 Informative Missingness in Nominal Data: A Graph-Theoretic Approach to Revealing Hidden Structure. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0099

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#DataScience #BigData #GraphTheory #ComputationalBiology #NetworkScience #Bioinformatics #SystemsBiology #BiomedicalResearch #MissingData

🧠 What if missing data is not a flaw, but one of the most informative parts of a complex system?

🔗 Informative Missingness in Nominal Data: A Graph-Theoretic Approach to Revealing Hidden Structure. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0099

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#DataScience #BigData #GraphTheory #ComputationalBiology #NetworkScience #Bioinformatics #SystemsBiology #BiomedicalResearch #MissingData

🧠 What if missing data is not a flaw, but one of the most informative parts of a complex system?

🔗 Informative Missingness in Nominal Data: A Graph-Theoretic Approach to Revealing Hidden Structure. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0099

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#DataScience #BigData #GraphTheory #ComputationalBiology #NetworkScience #Bioinformatics #SystemsBiology #BiomedicalResearch #MissingData

🧠 What if missing data is not a flaw, but one of the most informative parts of a complex system?

🔗 Informative Missingness in Nominal Data: A Graph-Theoretic Approach to Revealing Hidden Structure. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0099

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#DataScience #BigData #GraphTheory #ComputationalBiology #NetworkScience #Bioinformatics #SystemsBiology #BiomedicalResearch #MissingData

Almost done rewriting BAM score to length plotting script by @jpelbers.bsky.social (don't think he's on mastodon)! Can't believe this was a month's worth of digging :P New version is based off CairoMakie, thinking about playing with 3D WGL output using topographic map.

Also, this was a half decent sequencing run!

#julialang #julia #bioinformatics

https://www.europesays.com/ie/498496/ Bioinformatics accelerates discovery of marine-derived bioactive therapeutic peptides #AminoAcid #Bioinformatics #Biomedicine #Cell #Chromatography #Drugs #Éire #fermentation #food #IE #Ireland #Laboratory #Pathogen #peptides #pharmacy #Research #Technology

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan!
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

#comparativegenomics #dotplot #genomics #last #pairwisealignment #synteny #wholegenomealignment #nfcore #openscience #nextflow #bioinformatics

👋 Meet Erick Navarro Delgado! 🇨🇦🇲🇽

PhD candidate in Bioinformatics at the University of British Columbia. He maintains {RAMEN} for rOpenSci, a package for identifying associations between repeated environmental exposures and molecular outcomes, supporting exposome and multi-omics research.

Find Erick at:
🌐 erick-navarrodelgado.netlify.app
💻 github.com/ErickNavarroD
🔗 linkedin.com/in/erick-i-navarro-delgado

#MaintainerMonth #rOpenSci #RStats #Bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude!
Identify and quantify MHC eluted peptides from mass spectrometry raw data
Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

#dda #immunopeptidomics #massspectrometry #mhc #openms #peptides #nfcore #openscience #nextflow #bioinformatics

https://www.europesays.com/ie/495210/ How an AI system learned to write expert-level scientific code #ArtificialIntelligence #automation #Bioinformatics #Cell #Coronavirus #Covid19 #Éire #Epidemiology #Forecasting #genomics #IE #Ireland #labor #Language #Research #SingleCellGenomics #Software #Technology

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.1 - 4.1.1!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.1

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.1 - 4.1.1!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.1

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.1 - 4.1.1!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.1

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/rnafusion v4.1.1 - 4.1.1!
RNA-seq analysis pipeline for detection of gene-fusions
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.1

#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics