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#bioinformatics — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #bioinformatics, aggregated by home.social.

  1. New Research Topic alert!

    "New Approach Methodologies in Fungal Genomics and Evolution" is now open for submissions in Frontiers in Fungal Biology. We're calling for contributions from computational biologists, bioinformaticians, and genomics specialists developing or benchmarking next-generation methodologies for fungal research!

    Submit your article by 28 February 2027 ➡️ lnkd.in/dmWgxiu8

    #genomics #bioinformatics #thirdgenerationsequencing #mycology #fungi

  2. New Research Topic alert!

    "New Approach Methodologies in Fungal Genomics and Evolution" is now open for submissions in Frontiers in Fungal Biology. We're calling for contributions from computational biologists, bioinformaticians, and genomics specialists developing or benchmarking next-generation methodologies for fungal research!

    Submit your article by 28 February 2027 ➡️ lnkd.in/dmWgxiu8

    #genomics #bioinformatics #thirdgenerationsequencing #mycology #fungi

  3. Pipeline release! nf-core/oncoanalyser v3.0.0 - 3.0.0 - Scarlet Honeyeater!
    A comprehensive cancer DNA/RNA analysis and reporting pipeline
    Please see the changelog: github.com/nf-core/oncoanalyse

    #cancer #clinical #ctdna #dna #exome #longitudinal #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics

  4. Pipeline release! nf-core/oncoanalyser v3.0.0 - 3.0.0 - Scarlet Honeyeater!
    A comprehensive cancer DNA/RNA analysis and reporting pipeline
    Please see the changelog: github.com/nf-core/oncoanalyse

    #cancer #clinical #ctdna #dna #exome #longitudinal #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics

  5. Pipeline release! nf-core/oncoanalyser v3.0.0 - 3.0.0 - Scarlet Honeyeater!
    A comprehensive cancer DNA/RNA analysis and reporting pipeline
    Please see the changelog: github.com/nf-core/oncoanalyse

    #cancer #clinical #ctdna #dna #exome #longitudinal #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics

  6. Pipeline release! nf-core/oncoanalyser v3.0.0 - 3.0.0 - Scarlet Honeyeater!
    A comprehensive cancer DNA/RNA analysis and reporting pipeline
    Please see the changelog: github.com/nf-core/oncoanalyse

    #cancer #clinical #ctdna #dna #exome #longitudinal #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics

  7. Pipeline release! nf-core/oncoanalyser v3.0.0 - 3.0.0 - Scarlet Honeyeater!
    A comprehensive cancer DNA/RNA analysis and reporting pipeline
    Please see the changelog: github.com/nf-core/oncoanalyse

    #cancer #clinical #ctdna #dna #exome #longitudinal #ngs #panel #rna #targeted #wgs #wigits #wts #nfcore #openscience #nextflow #bioinformatics

  8. Pipeline release! nf-core/fastqrepair v1.1.1 - v1.1.1 - Reggina Amaranth [27/08/2026]!
    A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
    Please see the changelog: github.com/nf-core/fastqrepair

    #corruption #datacleaning #datarecovery #fastq #fastqcorrupted #fastqformat #readsinterleaving #recoverytool #unpairedreads #wellformed #nfcore #openscience #nextflow #bioinformatics

  9. @dessimoz 30years ago #unige helped start @SIB at that time #bioinformatics was a fledgling field. The rector of #UniGe Prof. Leuba welcomes #eccb participants. Q? what makes data scientifically valuable? Generate and analyzing data is growing, but this depends on the quality of the data. Separates the difference between data and knowledge. Data requires understanding.

  10. What if the biological sequence of these 3 billion base pairs is completely irrelevant... and the human genome was never written to be read, but folded? What if the information isn't carried by the linear code, but by the spatial geometry the molecule closes around itself, and we are merely trying to decipher a 3D shadow cast by a higher-dimensional structure?

    exxogen.hu/

    ​#Biophysics #Bioinformatics #InformationTheory #DNA #ComputationalBiology #ComplexSystems #Genomic #EXXOGEN

  11. 🧬 How can conflicting membrane #protein data be used reliably for research & #AI? MetaMP harmonises 4,000+ protein structures from major databases, making discrepancies traceable and supporting benchmarking & #ML. #RKI #Bioinformatics

    Read more
    🔗 spj.science.org/doi/10.34133/c

  12. Who we are looking for
    You are finishing or have recently finished an MSc in computational biology, bioinformatics, or a related field. What matters most is that you have a good understanding of biological networks, and good computational skills.
    Required
        • Strong Python and the scientific stack (NumPy, pandas)
        • Experience handling protein structure data (PDB/mmCIF, AlphaFold DB) and building reproducible data pipelines over thousands of structures
        • Working knowledge of network and graph analysis (NetworkX, igraph, clustering and community detection)
        • Familiarity with biological interaction and annotation resources (STRING, BioGRID, UniProt, disease gene sets such as OpenTargets or DisGeNET)
        • Benchmarking rigor: you understand precision/recall trade-offs, how to build fair negative sets, and how to spot circularity
        • Ability to read a published method and reproduce its analysis from paper plus code
        • Good scientific writing and communication in English

    Duration: 6 months
    Paid: CHF 2,200 gross monthly

    #gefedihired #switzerland #epfl #bioinformatics #StructuralBiology #StructuralBiology

  13. What you will do
        1. Run PeSTo Screen all-against-all over a large set of human proteins to generate a predicted interaction network.
        2. Deploy and characterize the results against reference interaction databases such as STRING, to see how well the predictions line up with known biology.
        3. Recreate ATOMICA’s disease-network analysis on your PeSTo Screen network, overlay disease-associated genes, and test which approach recovers disease pathways more cleanly. Comparison to ATOMICA is the core deliverable.

    Optional extension
    If time allows and depending on model scope, benchmark PeSTo Screen on standardized external tasks such as the RNAGlib RNA structure-function benchmark, and other.

    #gefedihired #switzerland #epfl #bioinformatics #StructuralBiology #StructuralBiology

  14. Internship project: Benchmarking PeSTo Screen against ATOMICA for molecular interaction networks
    About us
    Lemna Bio is an EPFL spin-off building structural AI models that reason about how molecules interact, directly from 3D structure. Our published model PeSTo predicts interaction interfaces on proteins. We are now extending it into PeSTo Screen, a model that performs all-against-all interaction screening: given large sets of molecules, it scores how likely each pair is to interact, in a single fast pass rather than by brute-force docking.

    The project
    A recent model from the Zitnik lab at Harvard, ATOMICA, learns representations of molecular interfaces and uses them to build interaction networks and recover disease-associated pathways. ATOMICA connects proteins by how similar their interfaces look. PeSTo Screen takes a different route: it predicts whether two proteins actually interact. This project asks a clear question: does predicting interactions directly recover biology better than comparing interface similarity?
    You will benchmark PeSTo Screen head to head against ATOMICA, using ATOMICA’s own published analyses as the yardstick.

    #gefedihired #switzerland #epfl #bioinformatics #StructuralBiology #StructuralBiology

  15. Lemna Bio (lemna.bio), an #EPFL spin-off building structural AI models that reason about how molecules interact, directly from 3D structures, is looking for a (paid!) intern to benchmark their newly developed models. Details in the reply to this toot; DM me if interested, feel free to pass it along your network if you know someone who might be interested.

    Please only candidates already based in Switzerland.

    #getfedihired #switzerland #bioinformatics #StructuralBiology

  16. biostars.org/p/9620457/

    Question on biostars.org : "Looking for help with molecular dynamics simulation of EEF1A2 D91N variant vs wild-type :

    I am the parent of a child carrying a heterozygous EEF1A2 D91N (Asp91Asn) variant.

    I have been trying to understand whether this variant may primarily affect protein stability rather than completely disrupting function."

    #biostars #mutation #variant #bioinformatics

  17. gitlab.vulpinedesigns.com/TheG
    This is a WIP storyboard of the work Atha and Inamruzui are doing at @vulpinelabs
    Each module handles a different aspect of the body with gene editing and transformational goals in mind.
    If you want to get involved in developing any of the hundreds of submodules for the GUESS Universal Editing Suite and SDK for the gene editing system, please get in touch!
    This stuff can't happen without basic needs being met. Please be kind and donate if you can.

    ko-fi.com/athakitsune
    paypal.me/athamanatha
    Cashapp $Athamanatha
    And more options on DM request.

    #science
    #softwaredesign
    #softwareengineering
    #bioinformatics
    #genetics
    #funding
    #lab
    #donate
    #fundraising
    #crowdfunding
    #geneediting
    #opensource
    #opensourcery
    #hellyeah
    #progress

  18. 🚨 What No One Tells You About MSc Biotechnology | Join 5K+ Students!

    MSc programs focus on theory, but industry demands hands-on bioinformatics + research skills that grads rarely get.

    Upgrade with BioResire Virtual Labs → Practical training that gets jobs! 👇

    JOIN OUR WHATSAPP CHANNEL: whatsapp.com/channel/0029Vb5u2

    #MscBiotechnology #Bioinformatics #BiotechJobs #LifeSciences #BiotechnologyIndia #MscBiotech #VirtualLabs #BioResire #ResearchSkills #IndustryTraining #BiotechCareers

  19. Step into research excellence with BioResire internships, building skills, real-world experience, and career pathways in biotechnology and bioinformatics innovation.
    #BioResire #Internships #Biotechnology #Bioinformatics #LifeSciences #ResearchCareers #BiotechStudents #CareerGrowth #LabExperience #ScienceCareers