#sequencing — Public Fediverse posts on home.social

michael @[email protected] · 2026-05-15 · 08:09 UTC

After more than two weeks, the Grauniad now has an #obituary for #CraigVenter: https://www.theguardian.com/science/2026/may/14/craig-venter-obituary I was kind of surprised that he died at a normal age, rather than using his resources to engineer his own immortality.

#science #genome #DNA #sequencing #humanGenome

#obituary #craigventer #science #genome #dna #sequencing

michael @[email protected] · 2026-05-15 · 08:09 UTC

After more than two weeks, the Grauniad now has an #obituary for #CraigVenter: https://www.theguardian.com/science/2026/may/14/craig-venter-obituary I was kind of surprised that he died at a normal age, rather than using his resources to engineer his own immortality.

#science #genome #DNA #sequencing #humanGenome

#obituary #craigventer #science #genome #dna #sequencing

michael @[email protected] · 2026-05-15 · 08:09 UTC

After more than two weeks, the Grauniad now has an #obituary for #CraigVenter: https://www.theguardian.com/science/2026/may/14/craig-venter-obituary I was kind of surprised that he died at a normal age, rather than using his resources to engineer his own immortality.

#science #genome #DNA #sequencing #humanGenome

#obituary #craigventer #science #genome #dna #sequencing

michael @[email protected] · 2026-05-15 · 08:09 UTC

After more than two weeks, the Grauniad now has an #obituary for #CraigVenter: https://www.theguardian.com/science/2026/may/14/craig-venter-obituary I was kind of surprised that he died at a normal age, rather than using his resources to engineer his own immortality.

#science #genome #DNA #sequencing #humanGenome

#humangenome #sequencing #dna #genome #science #craigventer

michael @[email protected] · 2026-05-15 · 08:09 UTC

After more than two weeks, the Grauniad now has an #obituary for #CraigVenter: https://www.theguardian.com/science/2026/may/14/craig-venter-obituary I was kind of surprised that he died at a normal age, rather than using his resources to engineer his own immortality.

#science #genome #DNA #sequencing #humanGenome

#obituary #craigventer #science #genome #dna #sequencing

naturepoker @[email protected] · 2026-05-09 · 23:48 UTC

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

#bioinformatics #sequencing #ont

naturepoker @[email protected] · 2026-05-09 · 23:48 UTC

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

#bioinformatics #sequencing #ont

naturepoker @[email protected] · 2026-05-09 · 23:48 UTC

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

#bioinformatics #sequencing #ont

naturepoker @[email protected] · 2026-05-09 · 23:48 UTC

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

#ont #sequencing #bioinformatics

naturepoker @[email protected] · 2026-05-09 · 23:48 UTC

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

#bioinformatics #sequencing #ont

Africa @[email protected] · 2026-04-27 · 12:54 UTC

https://www.europesays.com/africa/207320/ The 2024 Mpox surveillance in Senegal uncovers a large circulation of Chickenpox #Diseases #Herpesvirus #HumanitiesAndSocialSciences #MedicalResearch #microbiology #MPOX #multidisciplinary #NQPCR #science #Sénégal #Sequencing #VaricellaZosterVirus

#varicellazostervirus #sequencing #senegal #science #nqpcr #multidisciplinary

Giuseppe Michieli @[email protected] · 2026-04-21 · 16:21 UTC

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

#sequencing #strategies #influenza #h5n1 #emergency #us

Giuseppe Michieli @[email protected] · 2026-04-21 · 16:21 UTC

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

#sequencing #strategies #influenza #h5n1 #emergency #us

Giuseppe Michieli @[email protected] · 2026-04-21 · 16:21 UTC

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

#sequencing #strategies #influenza #h5n1 #emergency #us

Giuseppe Michieli @[email protected] · 2026-04-21 · 16:21 UTC

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

#us #emergency #h5n1 #influenza #strategies #sequencing

Giuseppe Michieli @[email protected] · 2026-04-21 · 16:21 UTC

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

#sequencing #strategies #influenza #h5n1 #emergency #us

Leszek @[email protected] · 2026-03-20 · 10:06 UTC

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

#peptide #sequencing

Leszek @[email protected] · 2026-03-20 · 10:06 UTC

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

#peptide #sequencing

Leszek @[email protected] · 2026-03-20 · 10:06 UTC

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

#peptide #sequencing

Leszek @[email protected] · 2026-03-20 · 10:06 UTC

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

#sequencing #peptide

Leszek @[email protected] · 2026-03-20 · 10:06 UTC

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

#peptide #sequencing

JMLR @[email protected] · 2024-04-11 · 21:02 UTC

'Data Thinning for Convolution-Closed Distributions', by Anna Neufeld, Ameer Dharamshi, Lucy L. Gao, Daniela Witten.

http://jmlr.org/papers/v25/23-0446.html

#thinning #rna #sequencing

#thinning #rna #sequencing

JMLR @[email protected] · 2024-04-11 · 21:02 UTC

'Data Thinning for Convolution-Closed Distributions', by Anna Neufeld, Ameer Dharamshi, Lucy L. Gao, Daniela Witten.

http://jmlr.org/papers/v25/23-0446.html

#thinning #rna #sequencing

#thinning #rna #sequencing

JMLR @[email protected] · 2024-04-11 · 21:02 UTC

'Data Thinning for Convolution-Closed Distributions', by Anna Neufeld, Ameer Dharamshi, Lucy L. Gao, Daniela Witten.

http://jmlr.org/papers/v25/23-0446.html

#thinning #rna #sequencing

#thinning #rna #sequencing

JMLR @[email protected] · 2024-04-11 · 21:02 UTC

'Data Thinning for Convolution-Closed Distributions', by Anna Neufeld, Ameer Dharamshi, Lucy L. Gao, Daniela Witten.

http://jmlr.org/papers/v25/23-0446.html

#thinning #rna #sequencing

#sequencing #rna #thinning

JMLR @[email protected] · 2024-04-11 · 21:02 UTC

'Data Thinning for Convolution-Closed Distributions', by Anna Neufeld, Ameer Dharamshi, Lucy L. Gao, Daniela Witten.

http://jmlr.org/papers/v25/23-0446.html

#thinning #rna #sequencing

#thinning #rna #sequencing

naturepoker @[email protected] · 2025-11-13 · 05:02 UTC

Any #archaea lab out there interested in having their Natrialba species sequenced on ONT r10 up to about 3Kx read depth for free? I'll send back annotated assembly, methylation data and raw signal files. I need at least one more species for a paper from a particular phylogenetic clade within the genus.

Please feel free to DM & boost!

#microbiology #collaboration #sequencing #bioinformatics

#archaea #microbiology #collaboration #sequencing #bioinformatics

naturepoker @[email protected] · 2025-07-23 · 15:51 UTC

Minimod preprint from @hasindu2008 gang is out. Code available https://github.com/warp9seq/minimod

I love the work they're doing with slow5/blow5 open spec for ONT raw data, and archive all internal reads using them. Really need to sit down and test this one out with my #archaea raw data!

#bioinformatics #methylation #ONT #sequencing

#archaea #bioinformatics #methylation #ont #sequencing

Frank Aylward @[email protected] · 2025-09-27 · 18:11 UTC

Does anyone have experience with the new ultima genome sequencing technology? Does it compare well to illumina?

It is apparently cheaper , but I was not sure about the quality.

#genomics #sequencing #omics #illumina

naturepoker @[email protected] · 2024-09-22 · 14:50 UTC

I have a big microbial sequencing batch coming up that will require decent methylation calling.

How's ONT vs PacBio on this front? R10's direct methylation detection is exactly what I'm looking for, but curious about first-hand experience from researchers for both platforms.

#sequencing #bioinformatics #nanopore #pacbio

Autism News International @[email protected] · 2021-12-09 · 12:00 UTC

New resource tracks genetic variations in Han Chinese populations

https://www.spectrumnews.org/news/toolbox/new-resource-tracks-genetic-variations-in-han-chinese-populations/

#whole-genomesequencing #commonvariants #sequencing #Toolbox #autism #SNPs

#whole #commonvariants #sequencing #toolbox #autism #snps

Autism News International @[email protected] · 2021-09-15 · 11:00 UTC

X chromosome exerts extra influence on brain development

https://www.spectrumnews.org/news/x-chromosome-exerts-extra-influence-on-brain-development/

#commonvariants #geneexpression #brainimaging #theoryofmind #sequencing #brainsize #autism #cortex #News #GWAS #SNPs #MRI #sex

#commonvariants #geneexpression #brainimaging #theoryofmind #sequencing #brainsize

PuckerLab @[email protected] · 2025-11-22 · 10:03 UTC

Updated our P2 output summary!

Across runs, output per flow cell varies widely, but the average is landing at ~80 Gbp.

Big thanks to Julie for the sequencing effort.

More info: https://www.izmb.uni-bonn.de/en/pbb/news#P2OS

#Genomics #Sequencing #P2 #ResearchUpdate
@boas_pucker

#genomics #sequencing #p2 #researchupdate

PuckerLab @[email protected] · 2025-12-20 · 11:35 UTC

Our digital Christmas tree this year is built from squares inspired by performance indicators in our ONT sequencing experiments 🎄📊
In 2025, sequencing output increased substantially — a great way to close the year!

More on the design idea and other news:
https://www.izmb.uni-bonn.de/en/pbb/news#tree2025

#OpenScience #Sequencing #DataArt #Christmas #LabLife
@boas_pucker
@samnm

#openscience #sequencing #dataart #christmas #lablife

jobRxiv @[email protected] · 2026-02-23 · 17:35 UTC

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9783