#sequencing — Public Fediverse posts

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

Speaking of - anyone know if there's any documentation/literature on how ONT put together their bacterial dorado polishing model?

I know it fares well in benchmarks, but curious about non-bacterial prokaryotes. Is anyone putting together their own polishing models for test?

#bioinformatics #sequencing #ONT

https://www.europesays.com/africa/207320/ The 2024 Mpox surveillance in Senegal uncovers a large circulation of Chickenpox #Diseases #Herpesvirus #HumanitiesAndSocialSciences #MedicalResearch #microbiology #MPOX #multidisciplinary #NQPCR #science #Sénégal #Sequencing #VaricellaZosterVirus

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

Next-Generation #Sequencing #Strategies During the 2024–2025 Avian #Influenza #H5N1 #Emergency Response in the #US, https://etidiohnew.blogspot.com/2026/04/next-generation-sequencing-strategies.html

Single-molecule #peptide #sequencing through reverse translation of peptides into DNA
https://www.nature.com/articles/s41587-026-03061-z

everything that can be bound with/converted to DNA can be "sequenced": it's sort of like SBS, but here DNA oligos are used instead of individual DNA bases and later actual SBS is performed to decode each oligo sequence... every read will inform about single aa at single position from single protein.
to sequence a protein with 300 aa, you'll need to sequence at least 300 reads!
neat!

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9783

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9734

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9552

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9475

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9363

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9272

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=9181

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8999

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8908

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8733

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8523

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8404

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=8243

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=7809

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=7669

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=7235

Our digital Christmas tree this year is built from squares inspired by performance indicators in our ONT sequencing experiments 🎄📊
In 2025, sequencing output increased substantially — a great way to close the year!

More on the design idea and other news:
https://www.izmb.uni-bonn.de/en/pbb/news#tree2025

#OpenScience #Sequencing #DataArt #Christmas #LabLife
@boas_pucker
@samnm

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=6472

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=6353

Updated our P2 output summary!

Across runs, output per flow cell varies widely, but the average is landing at ~80 Gbp.

Big thanks to Julie for the sequencing effort.

More info: https://www.izmb.uni-bonn.de/en/pbb/news#P2OS

#Genomics #Sequencing #P2 #ResearchUpdate
@boas_pucker

Any #archaea lab out there interested in having their Natrialba species sequenced on ONT r10 up to about 3Kx read depth for free? I'll send back annotated assembly, methylation data and raw signal files. I need at least one more species for a paper from a particular phylogenetic clade within the genus.

Please feel free to DM & boost!

#microbiology #collaboration #sequencing #bioinformatics

Postdoctoral Fellow Position in Human Inner Ear Computational Biology
Sunnybrook Research Institute

Come join Dabdoub #Lab at Sunnybrook #Research #Institute as a #bioinformatics #postdoctoral #fellow focusing on #single-cell & #multiomic #sequencing

See the full job description on jobRxiv: https://jobrxiv.org/job/sunnybrook-research-institute-2777...
https://jobrxiv.org/job/sunnybrook-research-institute-27778-postdoctoral-fellow-position-in-human-inner-ear-computational-biology/?fsp_sid=5149

Does anyone have experience with the new ultima genome sequencing technology? Does it compare well to illumina?

It is apparently cheaper , but I was not sure about the quality.

#genomics #sequencing #omics #illumina

Twenty years of tuberculosis-driven selection shaped the evolution of the meerkat major histocompatibility complex

Fijarczyk, A. & Babik, W. Detecting balancing selection in genomes: limits and prospects. Mol. Ecol. 24, 3529–3545 (2015).…
#NewsBeep #News #Science #AU #Australia #BiologicalandPhysicalAnthropology #Coevolution #Ecology #EvolutionaryBiology #Evolutionaryecology #general #LifeSciences #Paleontology #Sequencing #Zoology
https://www.newsbeep.com/au/94480/

Twenty years of tuberculosis-driven selection shaped the evolution of the meerkat major histocompatibility complex

Fijarczyk, A. & Babik, W. Detecting balancing selection in genomes: limits and prospects. Mol. Ecol. 24, 3529–3545 (2015).…
#NewsBeep #News #Science #AU #Australia #BiologicalandPhysicalAnthropology #Coevolution #Ecology #EvolutionaryBiology #Evolutionaryecology #general #LifeSciences #Paleontology #Sequencing #Zoology
https://www.newsbeep.com/au/94480/

Twenty years of tuberculosis-driven selection shaped the evolution of the meerkat major histocompatibility complex

Fijarczyk, A. & Babik, W. Detecting balancing selection in genomes: limits and prospects. Mol. Ecol. 24, 3529–3545 (2015).…
#NewsBeep #News #Science #AU #Australia #BiologicalandPhysicalAnthropology #Coevolution #Ecology #EvolutionaryBiology #Evolutionaryecology #general #LifeSciences #Paleontology #Sequencing #Zoology
https://www.newsbeep.com/au/94480/

Twenty years of tuberculosis-driven selection shaped the evolution of the meerkat major histocompatibility complex

Fijarczyk, A. & Babik, W. Detecting balancing selection in genomes: limits and prospects. Mol. Ecol. 24, 3529–3545 (2015).…
#NewsBeep #News #Science #AU #Australia #BiologicalandPhysicalAnthropology #Coevolution #Ecology #EvolutionaryBiology #Evolutionaryecology #general #LifeSciences #Paleontology #Sequencing #Zoology
https://www.newsbeep.com/au/94480/

Minimod preprint from @hasindu2008 gang is out. Code available https://github.com/warp9seq/minimod

I love the work they're doing with slow5/blow5 open spec for ONT raw data, and archive all internal reads using them. Really need to sit down and test this one out with my #archaea raw data!

#bioinformatics #methylation #ONT #sequencing

Minimod preprint from @hasindu2008 gang is out. Code available https://github.com/warp9seq/minimod

I love the work they're doing with slow5/blow5 open spec for ONT raw data, and archive all internal reads using them. Really need to sit down and test this one out with my #archaea raw data!

#bioinformatics #methylation #ONT #sequencing

First #cDNA @nanopore work I contributed to
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution
#sequencing #poly_a_tail
https://www.nature.com/articles/s41596-025-01205-0

First #cDNA @nanopore work I contributed to
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution
#sequencing #poly_a_tail
https://www.nature.com/articles/s41596-025-01205-0

First #cDNA @nanopore work I contributed to
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution
#sequencing #poly_a_tail
https://www.nature.com/articles/s41596-025-01205-0

First #cDNA @nanopore work I contributed to
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution
#sequencing #poly_a_tail
https://www.nature.com/articles/s41596-025-01205-0

First #cDNA @nanopore work I contributed to
Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution
#sequencing #poly_a_tail
https://www.nature.com/articles/s41596-025-01205-0

Our poster abstract for #ASMicrobe2025 is up! First bit of info from our warehouse lab led Haloarchaea study project. Session EEB-P-302 - EEB02 Saturday Microbial Evolution. Please feel free to come say hi 👋

#microbiology #archaea #sequencing #methylation

https://www.abstractsonline.com/pp8/#!/20974/presentation/3670

Kurze Erinnerung: Noch könnt ihr euch für ein Gespräch mit den DSMZ-Forschenden zu den diesen Themen anmelden 👇

Anmeldung: https://www.leibniz-gemeinschaft.de/ueber-uns/neues/veranstaltungen/book-a-scientist

#BookAScientist #ernährung #pflanzengesundheit #pflanzenviren #phagen #antibiotika #gesundheit #cassava #sequencing

Every now and then, I look at trackers and then I come to my senses and then go nope.

More power to you if you like your vibrato values in hex but very, very nope.

I mean, they're a step forward from the MC4 and 8 but that's about it.

#DAWs #Sequencing #CVGate #MIDI

SciTech Chronicles. . . . . . . . .Feb 22, 2025

https://bit.ly/stc022225

#fluidization #convergent #elongations #load-bearing #Octantis #eDNA #AI #sequencing #biomass #emulsions #stabilize #haircare #vortex #rings #electricity #ozone #nutrient #release #beads #glass