#nanopore — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #nanopore, aggregated by home.social.
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Single-molecule #m6A profiling reveals position-dependent #mRNA regulation and non-canonical roles for Ythdf2 in early embryogenesis
#zebrafish #nanopore #paper
https://www.biorxiv.org/content/10.64898/2026.07.03.736379v1 -
Single-molecule #m6A profiling reveals position-dependent #mRNA regulation and non-canonical roles for Ythdf2 in early embryogenesis
#zebrafish #nanopore #paper
https://www.biorxiv.org/content/10.64898/2026.07.03.736379v1 -
Single-molecule #m6A profiling reveals position-dependent #mRNA regulation and non-canonical roles for Ythdf2 in early embryogenesis
#zebrafish #nanopore #paper
https://www.biorxiv.org/content/10.64898/2026.07.03.736379v1 -
Single-molecule #m6A profiling reveals position-dependent #mRNA regulation and non-canonical roles for Ythdf2 in early embryogenesis
#zebrafish #nanopore #paper
https://www.biorxiv.org/content/10.64898/2026.07.03.736379v1 -
Single-molecule #m6A profiling reveals position-dependent #mRNA regulation and non-canonical roles for Ythdf2 in early embryogenesis
#zebrafish #nanopore #paper
https://www.biorxiv.org/content/10.64898/2026.07.03.736379v1 -
https://www.europesays.com/at/246652/ Parodontitis-Therapie senkt Herzrisiko: gezielte Keimblockade & bessere Diagnostik #Antibiotikum #AT #Austria #Blut #Diabetes #Diagnostik #Entzündung #Gesundheit #Health #Herzinfarkt #Immunsystem #Mikrobiom #Nanopore #Österreich #Parodontitis #Prävention #Schlaganfall #Sequenzierung #Zahnfleisch
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Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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What I'm also doing is assessing 3rd party sequencing vendor ONT output quality using some variations of these tools. Feel free to get in touch if you have a sequencing vendor you want to either recommend or have assessed!
#sequencing #microbiology #archaea #ONT #nanopore #bioinformatics
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What I'm also doing is assessing 3rd party sequencing vendor ONT output quality using some variations of these tools. Feel free to get in touch if you have a sequencing vendor you want to either recommend or have assessed!
#sequencing #microbiology #archaea #ONT #nanopore #bioinformatics
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What I'm also doing is assessing 3rd party sequencing vendor ONT output quality using some variations of these tools. Feel free to get in touch if you have a sequencing vendor you want to either recommend or have assessed!
#sequencing #microbiology #archaea #ONT #nanopore #bioinformatics
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What I'm also doing is assessing 3rd party sequencing vendor ONT output quality using some variations of these tools. Feel free to get in touch if you have a sequencing vendor you want to either recommend or have assessed!
#sequencing #microbiology #archaea #ONT #nanopore #bioinformatics
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What I'm also doing is assessing 3rd party sequencing vendor ONT output quality using some variations of these tools. Feel free to get in touch if you have a sequencing vendor you want to either recommend or have assessed!
#sequencing #microbiology #archaea #ONT #nanopore #bioinformatics
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I've been working on a small Julia library for working with raw nanopore sequencing signals.
It's still under development and not very mature, but maybe someone may find it useful and want to experiment with it. It provides functionality for signal-to-sequence alignments, basic signal scaling and segmentation, poly(A) tail detection, etc. If you stumble at issues or have ideas for new functionality or feedback, please reach out.
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I've been working on a small Julia library for working with raw nanopore sequencing signals.
It's still under development and not very mature, but maybe someone may find it useful and want to experiment with it. It provides functionality for signal-to-sequence alignments, basic signal scaling and segmentation, poly(A) tail detection, etc. If you stumble at issues or have ideas for new functionality or feedback, please reach out.
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I've been working on a small Julia library for working with raw nanopore sequencing signals.
It's still under development and not very mature, but maybe someone may find it useful and want to experiment with it. It provides functionality for signal-to-sequence alignments, basic signal scaling and segmentation, poly(A) tail detection, etc. If you stumble at issues or have ideas for new functionality or feedback, please reach out.
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I've been working on a small Julia library for working with raw nanopore sequencing signals.
It's still under development and not very mature, but maybe someone may find it useful and want to experiment with it. It provides functionality for signal-to-sequence alignments, basic signal scaling and segmentation, poly(A) tail detection, etc. If you stumble at issues or have ideas for new functionality or feedback, please reach out.
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Native Barcoding Kits Market in Europe | Report – IndexBox
Europe Native Barcoding Kits Market 2026 Analysis and Forecast to 20…
#Europe #EU #biopharmamarketreport #forecast #Haplotypephasingingenomics #Ligation-basedbarcoding #Low-frequencyvariantdetection #marketanalysis #Microbialstraindifferentiation #Motorprotein-basedsequencing(PacBio) #Multiplexingsamplesforcostreduction #Nanopore-basedsequencing(ONT) #Nativebarcodingkits #Transposase-basedtagging
https://www.europesays.com/europe/36663/ -
Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing -
Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing