#nanopore — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #nanopore, aggregated by home.social.
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Native Barcoding Kits Market in Europe | Report – IndexBox
Europe Native Barcoding Kits Market 2026 Analysis and Forecast to 20…
#Europe #EU #biopharmamarketreport #forecast #Haplotypephasingingenomics #Ligation-basedbarcoding #Low-frequencyvariantdetection #marketanalysis #Microbialstraindifferentiation #Motorprotein-basedsequencing(PacBio) #Multiplexingsamplesforcostreduction #Nanopore-basedsequencing(ONT) #Nativebarcodingkits #Transposase-basedtagging
https://www.europesays.com/europe/36663/ -
Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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Performance test of QNome nanopore sequencer. Looks very interesting - I'm always on the lookout for alternate platforms for Binomica. More reason for us to build platform agnostic squiggle/QC tools for the future!
https://www.biorxiv.org/content/10.64898/2026.04.29.721586v1
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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I went through a bunch of PCIe usb cards that can allow the P2 Solo to communicate with MinKnow (per ONT connecting those devices to a PCIe/USB is a No-No). Can verify we have liftoff w the Startech 20gbps , but not the U3142c. May need to ⬆️ Linux buffer size for DAQ #nanopore
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing -
Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing -
Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing -
Dear Nanopore folks, could you give an advice about an issue that my lab has with direct RNA sequencing on MinION. We're doing RNA004 sequencing of various samples and again and again, there's a staggering amount of reads with just repetitive AAG triplet. This happens for weird IVT RNA and perfectly normal yeast or HEK cells. I'm using Dorado 1.4.0 with the 5.3.0 sup model. Looks to me like the open channel or some kind of stalling is just called as this kmer.
#nanopore #nanoporesequencing -
https://www.europesays.com/be/10171/ DNA and RNA Analysis Instruments Market in Belgium | Report – IndexBox #Belgium #BiopharmaMarketReport #CapillaryElectrophoresis #DigitalDropletPartitioning(dPCR) #DNAAndRNAAnalysisInstruments #forecast #GeneExpressionAnalysis #GenomicSequencing #Genotyping&MutationDetection #IonTorrent #MarketAnalysis #Nanopore) #NextGenerationSequencing(Illumina #PathogenDetection&Surveillance #RealTimeFluorescenceDetection(qPCR)
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https://www.europesays.com/britain/4825/ DNA and RNA Analysis Instruments Market in the United Kingdom | Report – IndexBox #BiopharmaMarketReport #CapillaryElectrophoresis #DigitalDropletPartitioning(dPCR) #DNAAndRNAAnalysisInstruments #forecast #GeneExpressionAnalysis #GenomicSequencing #Genotyping&MutationDetection #IonTorrent #MarketAnalysis #Nanopore) #NextGenerationSequencing(Illumina #PathogenDetection&Surveillance #RealTimeFluorescenceDetection(qPCR) #UK #UnitedKingdom
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Hi everyone 🖖
If you are thinkging about using #nanopore for genomic surveillance in #hospitals, but don't have the #bioinformatics nor command-line skills, don't let that put you off.
'Modernising Medical Microbiology', at @NDMOxford in #Oxford, has developed `OxBreaker': a graphical tool that can help identify budding #outbreaks by #healthcare professionals without having to upload your data to external servers and compromise patient privacy. Worth a read 👇
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Hi everyone 🖖
If you are thinkging about using #nanopore for genomic surveillance in #hospitals, but don't have the #bioinformatics nor command-line skills, don't let that put you off.
'Modernising Medical Microbiology', at @NDMOxford in #Oxford, has developed `OxBreaker': a graphical tool that can help identify budding #outbreaks by #healthcare professionals without having to upload your data to external servers and compromise patient privacy. Worth a read 👇
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Hi everyone 🖖
If you are thinkging about using #nanopore for genomic surveillance in #hospitals, but don't have the #bioinformatics nor command-line skills, don't let that put you off.
'Modernising Medical Microbiology', at @NDMOxford in #Oxford, has developed `OxBreaker': a graphical tool that can help identify budding #outbreaks by #healthcare professionals without having to upload your data to external servers and compromise patient privacy. Worth a read 👇
-
Hi everyone 🖖
If you are thinkging about using #nanopore for genomic surveillance in #hospitals, but don't have the #bioinformatics nor command-line skills, don't let that put you off.
'Modernising Medical Microbiology', at @NDMOxford in #Oxford, has developed `OxBreaker': a graphical tool that can help identify budding #outbreaks by #healthcare professionals without having to upload your data to external servers and compromise patient privacy. Worth a read 👇
-
Hi everyone 🖖
If you are thinkging about using #nanopore for genomic surveillance in #hospitals, but don't have the #bioinformatics nor command-line skills, don't let that put you off.
'Modernising Medical Microbiology', at @NDMOxford in #Oxford, has developed `OxBreaker': a graphical tool that can help identify budding #outbreaks by #healthcare professionals without having to upload your data to external servers and compromise patient privacy. Worth a read 👇
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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https://www.europesays.com/hu/23549/ Nem fogod kitalálni, mi válhat vezető halálokká 2050-re #antibiotikum #AntibiotikumRezisztencia #egészségügy #halál #HU #Hungarian #Hungary #Magyar #Magyarország #Nanopore
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics