#nanopore — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #nanopore, aggregated by home.social.
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse!
Simple bacterial assembly and annotation pipeline
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.6.0#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.5.0 - nf-core/bacass v2.5.0!
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.5.0
#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Super cool paper (part of PhD thesis): I thought assembling the genome from raw signal isn't practical, but it seems not possible, but yielding results comparable/better to usual approaches: basecalling followed by de novo genome assembly!
#nanopore #GenomeAssembly
https://arxiv.org/pdf/2410.17801
https://arxiv.org/html/2503.02997v1#Ch7 -
Pipeline release! nf-core/bacass v2.4.0 - v2.4.0!
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.4.0
#assembly #bacterialgenomes #denovo #denovoassembly #genomeassembly #hybridassembly #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.3.1 - nf-core/bacass v2.3.1!
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.3.1
#assembly #bacterial-genomes #denovo #denovo-assembly #genome-assembly #hybrid-assembly #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.3.0 - !
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.3.0
#assembly #bacterial-genomes #denovo #denovo-assembly #genome-assembly #hybrid-assembly #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/bacass v2.2.0 - !
Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.2.0
#assembly #bacterial-genomes #denovo #denovo-assembly #genome-assembly #hybrid-assembly #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
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🔬 What are the opportunities and the challenges of nanopore sequencing technology? We talked about it with Philipp Rescheneder @[email protected] @[email protected]
“One of the things that I like about nanopore sequencing is that it’s very flexible”
#sciencemastodon #science #lifesciences #nanopore #humantechnopole #sequencing
https://www.youtube.com/watch?v=6awqLEHshrY&list=PLZAXXKHOAZejmAUgTARUfsXbREH0qsd9G&index=11
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🔬 Hazuki Takahashi from RIKEN IMS explains how nanopore long-read #sequencing technology can change research on the #humangenome
#sciencemastodon #science #lifesciences #humantechnopole #nanopore @[email protected] @[email protected] @riken_en