#10xgenomics — Public Fediverse posts

Pipeline release! nf-core/spatialaxe v1.0.1 - 1.0.1!
A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
Please see the changelog: https://github.com/nf-core/spatialaxe/releases/tag/1.0.1

#10xgenomics #atera #imageprocessing #spatial #spatialdataanalysis #spatialtranscriptomics #transcriptomics #xenium #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v4.2.0 - 4.2.0!
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/4.2.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/spatialaxe v1.0.0 - 1.0.0!
A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
Please see the changelog: https://github.com/nf-core/spatialaxe/releases/tag/1.0.0

#10xgenomics #atera #imageprocessing #spatial #spatialdataanalysis #spatialtranscriptomics #transcriptomics #xenium #nfcore #openscience #nextflow #bioinformatics

Interesting #10XGenomics #Flex #scRNAseq #bias

Original post: https://bsky.app/profile/did:plc:4hfcecqwahpnojy4sr7vay6j/post/3mj4ovdavhs2d

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v4.0.0 - 4.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/4.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v3.0.0 - 3.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/3.0.0

#10xgenomics #10xgenomics #alevin #bustools #cellranger #kallisto #rnaseq #singlecell #starsolo #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.0.0 - nf-core/scnanoseq v1.0.0 - Titanium Toad!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.0.0

#10xgenomics #long-read-sequencing #nanopore #scrna-seq #single-cell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v2.7.1 - 2.7.1!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.1

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v2.7.0 - 2.7.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.0

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

I'm very happy to announce that MultiQC v1.15 was just released! 🎉

https://github.com/ewels/MultiQC/releases/tag/v1.15

It comes with 🐛 fixes for #10xGenomics #CellRanger fix, #mosdepth tweaks, and supports a new tool #Librarian to predict library type from FastQ base composition 🕵🏻‍♂️ 🧬plus much more!

Also included is a ~5-7 fold speed-up in the initial file search. This will shave off a chunk of run-time off for people generating big reports 🏎💨

Thanks to Vlad Savelyev for this with a hat tip to Pontus Höjer at the end 🙏🏻

Karius raises $165 million for its liquid biopsy technology identifying diseases in a drop of blood - “What Karius is good at is identifying those novel microbes before they become an outbreak like coro... more: http://feedproxy.google.com/~r/Techcrunch/~3/xdhvzgcV1Eo/ #lightspeedventurepartners #generalcatalyst #machinelearning #managingpartner #guardanthealth #khoslaventures #biotechnology #softbankgroup #lifesciences #10xgenomics #visionfund #companies #infection #bacteria #virus

$125 million for Inscripta may usher in the next wave of genetic engineering - In these waning days of the second decade of the twenty-first century, technologists and investors a... more: http://feedproxy.google.com/~r/Techcrunch/~3/CroLQry2iyM/ #universityofcalifornia #emerging-technologies #jscapitalmanagement #paladincapitalgroup #geneticengineering #quantumcomputing #machinelearning #broadinstitute #biotechnology #manufacturing #lifesciences #10xgenomics #california #executive #oak