#longreadsequencing — Public Fediverse posts

Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

This week, I visited the Department of Biochemistry and Biotechnology at the University of Thessaly to give lectures on Long Read Genomics. It was a great experience with many interesting discussions, and I am very grateful for the kind hospitality.

More details: https://www.izmb.uni-bonn.de/en/pbb/news#thessaly2026

#Genomics #LongReadSequencing #Bioinformatics #OpenScience #AcademicLife #Erasmus
@PuckerLab

This week, I visited the Department of Biochemistry and Biotechnology at the University of Thessaly to give lectures on Long Read Genomics. It was a great experience with many interesting discussions, and I am very grateful for the kind hospitality.

More details: https://www.izmb.uni-bonn.de/en/pbb/news#thessaly2026

#Genomics #LongReadSequencing #Bioinformatics #OpenScience #AcademicLife #Erasmus
@PuckerLab

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

We are delighted to welcome Hannah to our group. She will conduct long-read sequencing to explore plant genomes. We are excited to have her on board and look forward to amazing discoveries ahead!

https://www.izmb.uni-bonn.de/en/pbb/team

#PlantGenomics #LongReadSequencing #Bioinformatics #Nanopore #PlantScience #TeamScience
@boas_pucker

We are delighted to welcome Hannah to our group. She will conduct long-read sequencing to explore plant genomes. We are excited to have her on board and look forward to amazing discoveries ahead!

https://www.izmb.uni-bonn.de/en/pbb/team

#PlantGenomics #LongReadSequencing #Bioinformatics #Nanopore #PlantScience #TeamScience
@boas_pucker

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Nice reminder of a great time at Czech University of Life Sciences Prague in Prague 🇨🇿

Teaching Long Read Genomics and exchanging ideas with curious minds is always a highlight. Thanks for the great discussions and warm welcome!

Lecture slides: https://github.com/bpucker/LRG

#Genomics #LongReadSequencing #Academia #Teaching #Bioinformatics #Prague
@PuckerLab

Nice reminder of a great time at Czech University of Life Sciences Prague in Prague 🇨🇿

Teaching Long Read Genomics and exchanging ideas with curious minds is always a highlight. Thanks for the great discussions and warm welcome!

Lecture slides: https://github.com/bpucker/LRG

#Genomics #LongReadSequencing #Academia #Teaching #Bioinformatics #Prague
@PuckerLab

Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.2.0 - mag 5.2.0 - Puce Pangolin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.2.0 - mag 5.2.0 - Puce Pangolin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.0.0 - mag 5.0.0 - Green Squirrel!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.0.0 - mag 5.0.0 - Green Squirrel!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

T-DNA insertions: more surprises than you think 🌱🧬.
PCR can miss extra T-DNAs & complex rearrangements. Long-read sequencing captures the full picture. Still super relevant for plant genomics!
🔗 https://doi.org/10.1186/s12864-021-07877-8
#PlantScience #Genotyping #LongReadSequencing #Arabidopsis @PuckerLab

T-DNA insertions: more surprises than you think 🌱🧬.
PCR can miss extra T-DNAs & complex rearrangements. Long-read sequencing captures the full picture. Still super relevant for plant genomics!
🔗 https://doi.org/10.1186/s12864-021-07877-8
#PlantScience #Genotyping #LongReadSequencing #Arabidopsis @PuckerLab

Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals.

#Transposons #SomaticTransposition #Hypomethylation #MET1 #Arabidopsis #LongReadSequencing

https://link.springer.com/article/10.1186/s13059-025-03691-7

Pore-C was super helpful to bring a good Victoria cruziana genome sequence assembly to chromosome-scale: N50 increased from 44 to 300 Mbp.

https://doi.org/10.1101/2024.06.15.599162

#PlantGenomics #LongReadSequencing #BigData #ONT @PuckerLab

Pore-C was super helpful to bring a good Victoria cruziana genome sequence assembly to chromosome-scale: N50 increased from 44 to 300 Mbp.

https://doi.org/10.1101/2024.06.15.599162

#PlantGenomics #LongReadSequencing #BigData #ONT @PuckerLab

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

🧬 Can advanced sequencing technologies bring clarity to genetic variants once deemed uncertain?

🔗 Combining long-read DNA and RNA sequencing to enhance molecular understanding of structural variations leading to copy gains. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.04.031

📚 CSBJ: https://www.csbj.org/

#Genomics #StructuralVariants #LongReadSequencing #RareDisease #PrecisionMedicine #RNAseq #Nanopore #GeneticDiagnostics #NanoporeSequencing #Transcriptomics

Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Just wrapped up my talk at the University of Mainz on "Exploring the Specialized Metabolism of Plants with Long Read Sequencing" 🌿🔬 Great to share how nanopore sequencing helps decode complex plant pathways with ecological and biomedical potential. Thanks to the organizers and all who joined the discussion! #PlantScience #Genomics #LongReadSequencing #SpecializedMetabolism #UniversityOfMainz @PuckerLab

Just wrapped up my talk at the University of Mainz on "Exploring the Specialized Metabolism of Plants with Long Read Sequencing" 🌿🔬 Great to share how nanopore sequencing helps decode complex plant pathways with ecological and biomedical potential. Thanks to the organizers and all who joined the discussion! #PlantScience #Genomics #LongReadSequencing #SpecializedMetabolism #UniversityOfMainz @PuckerLab

Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Today was a special day. #nanopore #LongReadSequencing

Excited to share the release of our Tropaeolum majus genome sequence and annotation:
https://doi.org/10.1101/2024.11.01.621629
#Genomics #LongReadSequencing

@PuckerLab @tubraunschweig

Excited to share the release of our Tropaeolum majus genome sequence and annotation:
https://doi.org/10.1101/2024.11.01.621629
#Genomics #LongReadSequencing

@PuckerLab @tubraunschweig

Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Students learned all steps of a plant genome project including planning, DNA extraction, nanopore sequencing, genome sequence assembly, gene prediction, functional annotation, data submission, and final presentation.
#Genomics #LongReadSequencing
(2/11)

Students learned all steps of a plant genome project including planning, DNA extraction, nanopore sequencing, genome sequence assembly, gene prediction, functional annotation, data submission, and final presentation.
#Genomics #LongReadSequencing
(2/11)

@samnm and Benneth completed their work on the Ceratophyllum submersum plastome sequence. The phylogenetic tree shows the relationship of this aquatic plant to other plant species
https://doi.org/10.1186/s13104-023-06459-z
#Genomics #AquaticPlants #LongReadSequencing

Excited to share that Ronja just performed ONT sequencing run #100 in our lab. Read length distribution and output look great. Many thanks to Ronja and Katharina!
Read more about our genomics projects:
https://www.tu-braunschweig.de/en/ifp/pbb/research/genome-sequencing-projects
#LongReadSequencing #Genomics

#introduction
I am excited about #microbiome interactions and #evolution of #pathogens!
I am working with #LongReadSequencing #PacBio, #genomics, #bioinformatics and #MachineLearning.
Currently working as a #PhD student at #UniNeuchatel and at #ETHZ.
Looking forward to discover interesting #science here!