home.social

#scrnaseq — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #scrnaseq, aggregated by home.social.

  1. Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
    Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
    Please see the changelog: github.com/nf-core/scnanoseq/r

    #10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

  2. Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊

    Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.

    📅 When: 12 and 13 May 2026
    🕑 Time: 2:00 PM – 4:00 PM (AEST)
    📍 Where: Online
    💰 Cost: FREE for academic sector (places are limited!)

    🔗Registration form link: lnkd.in/gQcHggGF

    #Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats

  3. " Instead, #Hepatoblastoma #tumors contain a large suppressive #myeloid compartment which poses opportunities for targeting. Specifically, therapeutic antibodies
    targeting the #tumor antigen #GPC3 to induce ADCP by #macrophages, in combination with myeloid
    #ImmuneCheckpointBlockade (#CD47/SIRPa, or VISTA) could be a feasible strategy to explore in future studies"

    Krijgsman et al. from Vercoulen lab in the #UMCUtrecht, on #bioRXiv:
    biorxiv.org/content/10.1101/20

    #scRNAseq #spatial #CyTOF #immunology

  4. Yesterday, in the afternoon plenty of #scRNAseq work, a.o. Céline Delloye-Bourgeois showing her group's latest work on #neuroblastoma development and #metastatic progression. Including some of our own scRNA-seq data. Very cool.

    Furthermore, more #SingleCell, also spatial, sequencing on #tumour heterogeneity and early stages. And work on cells that persist during/after #therapy, dubbed persister cells.

    #anr2023