#scrnaseq — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #scrnaseq, aggregated by home.social.
-
Benchmarking computational decontamination of ambient RNA
https://www.biorxiv.org/content/10.64898/2026.01.13.699237v1.full
-
Benchmarking computational decontamination of ambient RNA
https://www.biorxiv.org/content/10.64898/2026.01.13.699237v1.full
-
Benchmarking computational decontamination of ambient RNA
https://www.biorxiv.org/content/10.64898/2026.01.13.699237v1.full
-
Benchmarking computational decontamination of ambient RNA
https://www.biorxiv.org/content/10.64898/2026.01.13.699237v1.full
-
Benchmarking computational decontamination of ambient RNA
https://www.biorxiv.org/content/10.64898/2026.01.13.699237v1.full
-
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
RE: https://genomic.social/@bgeedb/116760320692467761
Super happy to see this out. 😎 #FAIR #FAIRdata #SingleCell #scRNAseq
-
RE: https://genomic.social/@bgeedb/116760320692467761
Super happy to see this out. 😎 #FAIR #FAIRdata #SingleCell #scRNAseq
-
RE: https://genomic.social/@bgeedb/116760320692467761
Super happy to see this out. 😎 #FAIR #FAIRdata #SingleCell #scRNAseq
-
RE: https://genomic.social/@bgeedb/116760320692467761
Super happy to see this out. 😎 #FAIR #FAIRdata #SingleCell #scRNAseq
-
RE: https://genomic.social/@bgeedb/116760320692467761
Super happy to see this out. 😎 #FAIR #FAIRdata #SingleCell #scRNAseq
-
Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
-
Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
-
Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
-
Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
-
Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
-
Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX
-
Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX
-
Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX
-
Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX
-
Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX
-
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Our new pre‑print is out!
scReady – an automated and accessible pipeline for single‑cell RNA‑Seq preprocessing: Empowering novice bioinformaticians
https://wellcomeopenresearch.org/articles/11-43
@haessar.bsky.social @fionan-a.bsky.social @yiyicheng
-
Our new pre‑print is out!
scReady – an automated and accessible pipeline for single‑cell RNA‑Seq preprocessing: Empowering novice bioinformaticians
https://wellcomeopenresearch.org/articles/11-43
@haessar.bsky.social @fionan-a.bsky.social @yiyicheng
-
Our new pre‑print is out!
scReady – an automated and accessible pipeline for single‑cell RNA‑Seq preprocessing: Empowering novice bioinformaticians
https://wellcomeopenresearch.org/articles/11-43
@haessar.bsky.social @fionan-a.bsky.social @yiyicheng
-
Our new pre‑print is out!
scReady – an automated and accessible pipeline for single‑cell RNA‑Seq preprocessing: Empowering novice bioinformaticians
https://wellcomeopenresearch.org/articles/11-43
@haessar.bsky.social @fionan-a.bsky.social @yiyicheng
-
Our new pre‑print is out!
scReady – an automated and accessible pipeline for single‑cell RNA‑Seq preprocessing: Empowering novice bioinformaticians
https://wellcomeopenresearch.org/articles/11-43
@haessar.bsky.social @fionan-a.bsky.social @yiyicheng
-
Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
-
#NeuralStemCells (NSCs) & ependymal cells (ECs) are derived from #RadialGlialCells. This study uses #scRNAseq to characterize cell fate trajectories in the developing #VentricularZone, identifying TFEB as a regulator of the NSC/EPC balance @PLOSBiology https://plos.io/3HbrsJG
-
#NeuralStemCells (NSCs) & ependymal cells (ECs) are derived from #RadialGlialCells. This study uses #scRNAseq to characterize cell fate trajectories in the developing #VentricularZone, identifying TFEB as a regulator of the NSC/EPC balance @PLOSBiology https://plos.io/3HbrsJG
-
#NeuralStemCells (NSCs) & ependymal cells (ECs) are derived from #RadialGlialCells. This study uses #scRNAseq to characterize cell fate trajectories in the developing #VentricularZone, identifying TFEB as a regulator of the NSC/EPC balance @PLOSBiology https://plos.io/3HbrsJG
-
#NeuralStemCells (NSCs) & ependymal cells (ECs) are derived from #RadialGlialCells. This study uses #scRNAseq to characterize cell fate trajectories in the developing #VentricularZone, identifying TFEB as a regulator of the NSC/EPC balance @PLOSBiology https://plos.io/3HbrsJG
-
#NeuralStemCells (NSCs) & ependymal cells (ECs) are derived from #RadialGlialCells. This study uses #scRNAseq to characterize cell fate trajectories in the developing #VentricularZone, identifying TFEB as a regulator of the NSC/EPC balance @PLOSBiology https://plos.io/3HbrsJG
-
Yuyao Song presents ScGOclust to compare #singlecell #scRNAseq between distant species, such as fly and mammal: gene level comparisons don’t work because there has been too much divergence. 💡 Instead of genes, use GO terms has features to compare cells. #ismbeccb2025
https://doi.org/10.1093/bioinformatics/btaf195 -
Yuyao Song presents ScGOclust to compare #singlecell #scRNAseq between distant species, such as fly and mammal: gene level comparisons don’t work because there has been too much divergence. 💡 Instead of genes, use GO terms has features to compare cells. #ismbeccb2025
https://doi.org/10.1093/bioinformatics/btaf195 -
Yuyao Song presents ScGOclust to compare #singlecell #scRNAseq between distant species, such as fly and mammal: gene level comparisons don’t work because there has been too much divergence. 💡 Instead of genes, use GO terms has features to compare cells. #ismbeccb2025
https://doi.org/10.1093/bioinformatics/btaf195 -
Yuyao Song presents ScGOclust to compare #singlecell #scRNAseq between distant species, such as fly and mammal: gene level comparisons don’t work because there has been too much divergence. 💡 Instead of genes, use GO terms has features to compare cells. #ismbeccb2025
https://doi.org/10.1093/bioinformatics/btaf195 -
Yuyao Song presents ScGOclust to compare #singlecell #scRNAseq between distant species, such as fly and mammal: gene level comparisons don’t work because there has been too much divergence. 💡 Instead of genes, use GO terms has features to compare cells. #ismbeccb2025
https://doi.org/10.1093/bioinformatics/btaf195 -
Single cell RNA-sequencing (#scRNAseq) is an essential method to learn about cells in health and disease. Here we have studied "multiplets", an important source of error of scRNAseq. We find that multiplets are astonishingly frequent and hard to eliminate.
https://doi.org/10.1101/2025.06.09.658708