#scrnaseq — Public Fediverse posts

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Interesting #10XGenomics #Flex #scRNAseq #bias

Original post: https://bsky.app/profile/did:plc:4hfcecqwahpnojy4sr7vay6j/post/3mj4ovdavhs2d

Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2

#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics

Uneven #hormone distribution in #plants regulates #cell_division and #growth, biologists discover.

#Brassinosteroids #signalling #cell_cycle #agriculture #scRNAseq

https://phys.org/news/2025-03-uneven-hormone-cell-division-growth.html

Latest publication from when I was working at the UMC Utrecht: https://www.nature.com/articles/s44161-022-00171-0

Bulk #RNAseq of advanced carotid plaques from 654 patients. This data yielded five plaque types that correlate with clinical representation. And add an additional layer of information on top of the standard #histology.

Also #scRNAseq #GWAS #macrophages #SMC

#atherosclerosis #CoronaryArteryDisease (CAD)

#introduction Long overdue, but here goes:

I'm Arjan, during working hours researching a specific children's #cancer, #neuroblastoma, mostly by means of #bioinformatics analyses of #sequencing data; right now lots of #scRNAseq . I might occasionally toot about this, or related stuff like #immunology , #rstats , #atherosclerosis and other scientific interests and/or fields that I've worked in.