#scrnaseq — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #scrnaseq, aggregated by home.social.
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The main #ECCB2026 conference may be over, but today lots of great people are meeting to discuss single-cell standards and collaborations:
Single-cell and spatial data FAIRification, community standards and training
organised by @fbastian @SIB & @elixir_europe
eccb2026.org/communities-day#single-cell-and-spatial-data-fairification
#scRNAseq #SingleCell #FAIRdata #bioinformatics #OpenData #GenevaLovesData -
Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant!
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0#10xgenomics #longreadsequencing #nanopore #rnaseq #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! 📊
Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.
📅 When: 12 and 13 May 2026
🕑 Time: 2:00 PM – 4:00 PM (AEST)
📍 Where: Online
💰 Cost: FREE for academic sector (places are limited!)🔗Registration form link: https://lnkd.in/gQcHggGF
#Bioinformatics #RNAseq #scRNAseq #Genomics #ReproducibleResearch #OpenScience #RStats
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.1 - nf-core/scnanoseq v1.2.1 - Zinc Turtle!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.1
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0
#10xgenomics #longreadsequencing #nanopore #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
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2D embeddings for high-dimensional data, the battle rages on
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012403
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"By using time-resolved analyses of scRNA-seq data, we determined the potential transitional trajectories of tumor cells and identified the metastasis-initiating subpopulations"
https://link.springer.com/article/10.1007/s11684-024-1081-7
Reading right now. The identification of cells that initiate #metastasis are of interest, although n=2 paired primary and #BoneMarrow samples may be a bit limited.
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I made a short video of the strange things UMAP and t-SNE can do to your data. The algorithms are shown mostly working as intended, yet with some surprising consequences.
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Yesterday, in the afternoon plenty of #scRNAseq work, a.o. Céline Delloye-Bourgeois showing her group's latest work on #neuroblastoma development and #metastatic progression. Including some of our own scRNA-seq data. Very cool.
Furthermore, more #SingleCell, also spatial, sequencing on #tumour heterogeneity and early stages. And work on cells that persist during/after #therapy, dubbed persister cells.