#transcriptomic — Public Fediverse posts

Aligning #scRNAseq datasets along a shared temporal axis across studies, species & systems is hard. This study uses meta-analytic models to develop a #transcriptomic measure of #neurodevelopmental timing that is applicable to different organisms & tissue types @PLOSBiology https://plos.io/4ch0XiX

Thompson et al. model gene expression as a binary trait to examine transcriptome turnover across Drosophila species, inferring gains and losses of organ-specific expression.

🔗 doi.org/10.1093/molbev/msaf106

#molbio #evobio #transcriptomic #drosophila

#Bamboo sp. Dendrocalamus brandisii is a valuable source of both #food and #wood. Jiang et al. combine #genomic, #transcriptomic, and #metabolomic analyses to help further the #development of this valuable resource.🔓⬇️🎍
https://doi.org/10.1111/jipb.13592
@wileyplantsci
#JIPB #PlantSci #botany

`Investigations..ascertain that the motors are non-toxic..#transcriptomic analysis affirms that the motors are not genotoxic..#Toxicity studies in mice reveal that the motors show no signs of toxicity up to a dose of 55 mg/ kg body weight..biodistribution studies show that they remain in the blood circulation after injection and..possibly adhere to the walls of the blood vessel..we demonstrate the #biocompatibility of #nanomotors in live cellular and organismal systems`

https://www.sciencedirect.com/science/article/abs/pii/S2772950822003259

`Investigations..ascertain that the motors are non-toxic..#transcriptomic analysis affirms that the motors are not genotoxic..#Toxicity studies in mice reveal that the motors show no signs of toxicity up to a dose of 55 mg/ kg body weight..biodistribution studies show that they remain in the blood circulation after injection and..possibly adhere to the walls of the blood vessel..we demonstrate the #biocompatibility of #nanomotors in live cellular and organismal systems`

https://www.sciencedirect.com/science/article/abs/pii/S2772950822003259

`Investigations..ascertain that the motors are non-toxic..#transcriptomic analysis affirms that the motors are not genotoxic..#Toxicity studies in mice reveal that the motors show no signs of toxicity up to a dose of 55 mg/ kg body weight..biodistribution studies show that they remain in the blood circulation after injection and..possibly adhere to the walls of the blood vessel..we demonstrate the #biocompatibility of #nanomotors in live cellular and organismal systems`

https://www.sciencedirect.com/science/article/abs/pii/S2772950822003259

`Investigations..ascertain that the motors are non-toxic..#transcriptomic analysis affirms that the motors are not genotoxic..#Toxicity studies in mice reveal that the motors show no signs of toxicity up to a dose of 55 mg/ kg body weight..biodistribution studies show that they remain in the blood circulation after injection and..possibly adhere to the walls of the blood vessel..we demonstrate the #biocompatibility of #nanomotors in live cellular and organismal systems`

https://www.sciencedirect.com/science/article/abs/pii/S2772950822003259

`Investigations..ascertain that the motors are non-toxic..#transcriptomic analysis affirms that the motors are not genotoxic..#Toxicity studies in mice reveal that the motors show no signs of toxicity up to a dose of 55 mg/ kg body weight..biodistribution studies show that they remain in the blood circulation after injection and..possibly adhere to the walls of the blood vessel..we demonstrate the #biocompatibility of #nanomotors in live cellular and organismal systems`

https://www.sciencedirect.com/science/article/abs/pii/S2772950822003259

Now Golnaz Vahedi from UPenn
https://vahedilab.com/
speaking on
"Modeling Type 1 #Diabetes progression from single-cell #transcriptomic measurements in #human #islets

Vision is to do #SingleCell profiling of #pancreatic cells and peripheral blood, simultaneously, to identify patients who can benefit from early interventions

https://www.nature.com/articles/s42255-022-00531-x

#CSSingleCells23

Large-scale across species #transcriptomic analysis identifies genetic selection signatures associated with #longevity in mammals

Organ-specific expression patterns of #methionine restriction and translation fidelity genes correlate with longevity in 103 #mammalian species

https://www.embopress.org/doi/full/10.15252/embj.2022112740

🔓⬇️#OpenAccess #PlantScience for your weekend!
#Genomic, #transcriptomic, and #metabolomic analysis of Oldenlandia corymbosa reveals the #biosynthesis and mode of action of anti-#cancer metabolites.
https://doi.org/10.1111/jipb.13469
@wileyplantsci
#JIPB #PlantSci #medicine #PlantScience

#Cochlea #cell atlas built from single-cell sequencing discovers new cell types, uncovers hidden molecular features.

#genomics #transcriptomic #Emilin2 #mRNA

https://phys.org/news/2023-06-cochlea-cell-atlas-built-single-cell.html

High-resolution #transcriptomic and #epigenetic profiling identifies novel regulators of chronic obstructive pulmonary disease #COPD
Multi-omics resource of primary human lung #fibroblasts across COPD stages by Renata Jurkowska and coworkers at Cardiff University

https://www.embopress.org/doi/10.15252/embj.2022111272

High-resolution #transcriptomic and #epigenetic profiling identifies novel regulators of chronic obstructive pulmonary disease #COPD
Multi-omics resource of primary human lung #fibroblasts across COPD stages by Renata Jurkowska and coworkers at Cardiff University

https://www.embopress.org/doi/10.15252/embj.2022111272

High-resolution #transcriptomic and #epigenetic profiling identifies novel regulators of chronic obstructive pulmonary disease #COPD
Multi-omics resource of primary human lung #fibroblasts across COPD stages by Renata Jurkowska and coworkers at Cardiff University

https://www.embopress.org/doi/10.15252/embj.2022111272

High-resolution #transcriptomic and #epigenetic profiling identifies novel regulators of chronic obstructive pulmonary disease #COPD
Multi-omics resource of primary human lung #fibroblasts across COPD stages by Renata Jurkowska and coworkers at Cardiff University

https://www.embopress.org/doi/10.15252/embj.2022111272

Another Atlassing talk 😆, from Kimberly Siletti: #transcriptomic cell-type diversity across the human #brain.

Don't miss this great #OpenAccess #review in @Non_Coding_RNA about #MicroRNA resources- it has a wonderful section about the contributions and use of the #GeneOntology for examining #transcriptomic data: DOI: 10.3390/ncrna9020018
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RT @UCLgene
Fantastic to see my previous student, Diana Luna Buitrago, writing this great review of microRNA analysis tools: Insights into Online microRNA Bioinformatics Tools https://www.mdpi.com/2311-553X/9/…
https://twitter.com/UCLgene/status/1632682509069680641

Absolutely fantastic new paper from Marie Brasseur & @leeselab in @BioMedCentral featuring Gammarus fossarum - a wonderful demonstration of the #geneontology in use (thanks for the citation!) @VascoElbrecht @rksalis @weiss_martina @Daniel_G1978 #goannotation
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RT @leeselab
New study by our @unidue team & @Leibniz_LIB on #multiplestressor impacts lead by Marie Brasseur 🎉. We herein focused on #transcriptomic analysis of the #freshwater k…
https://twitter.com/leeselab/status/1601184358370459648

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here

My first #toot & #introduction on Mastodon after soft-exiting #Twitter:

Hey y'all. I'm a 2nd-year #PhD student at #UGA in the #PlantBiology department 🌱. I got my BS in #Botany at #CPP. I'm currently a #NSFGRFP & UGA Presidential fellow.

I research 🌸 #FlowerColor in Geranium & using 🧬 #Transcriptomic, #Phylogenomic, & #CitizenScience approaches.

I'm also really passionate about #Diversity in #STEM as a 🏳️‍🌈 #Queer & 🇳🇮🇲🇽-🇺🇸 #Latinx student!

I'm hoping to reconnect with my Twitter network here