home.social

#rnaseq — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #rnaseq, aggregated by home.social.

  1. New co-authored manuscript on liver cancer multi-omics:

    Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
    Anspach et al., jlr.org/article/S0022-2275(26)

    8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).

    #Bioinformatics #Metabolomics #RNASeq

  2. 🧬 Can AI truly decode gene expression, or is it being misled by too much data?

    🔗 Artificial Intelligence in Bulk RNA-Seq: Challenges and Potential Solutions. Computational and Structural Biotechnology Journal (CSBJ). DOI: doi.org/10.34133/csbj.0039

    📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

    #ArtificialIntelligence #MachineLearning #Bioinformatics #Genomics #RNAseq #ComputationalBiology #SystemsBiology #AI #PrecisionMedicine #BigData #AIinHealthcare

  3. [Edit] I think I finally have some winners WITH cell identities, though I had to dig for that part. Thanks!

    Anyone working in #Genomics #SingleCell #RNASeq aware of a good data source for human kidney single-cell data that has *labeled* cell types.

    We have a #GWAS that the target tissue would be kidneys. I'm stuck doing cell type analyses until I can find some labeled cell type data to connect back to the association data.

  4. 🎓 EuroBioC2025 Bioconductor Carpentry Workshops – registration now open!

    📍 Barcelona | 📅 15–16 Sept 2025

    Bulk & single-cell RNA-seq analysis with expert instructors.

    🔗 eventum.upf.edu/go/eurobioc202

    #EuroBioC2025 #RNAseq #Bioinformatics #RStats

  5. CW: Long Hashtag List for the Life Sciences

    Life Sciences Hashtags

    • Animal Behaviour
    #AnimalBehavior #AnimalBehaviour #AnimalCognition #AnimalPsychology #AnimalResearch #AnimalSocieties #AnimalStudies #BehavioralEcology #BehaviouralEcology #BehavioralScience #BehaviouralScience #CameraTraps #ComparativeCognition #CriticalAnimalStudies #Learning #Memory #PositiveReinforcement #Sociobiology #TrailCam

    • Astrobiology
    #AlienLife #Astrobiology #Biosignatures #Cryosphere DeepIce #EarthScience #Exoplanets #GeoScience #Habitability #Karst #MicroHabitats #OceanWorlds #OriginOfLife #PlanetaryCaves #PlanetaryScience

    • Behaviour Science
    #AnthroZoology #Behavior #Behaviour #Behaviour2023 #BehavioralScience #BehaviouralScience #Biopsychology #CognitiveDevelopment #ComparativeCognition #DevelopmentalPsychology #Ethology #Learning #Memory #Neuroethology #PhilosophyOfMind #PleasureActivism #Psychology #SelfOrganisation #SelfOrganization #SocialNetwork

    • Biochemistry | Group: @biochemistry
    #Actin #AminoAcids #Biochemical #Biochemistry #Catalyst #Catalysis #DNA #Enzyme #Enzymes #Hormones #IonChannels #Kinetics #Metabolism #Metabolomics #mRNA #Peptides #Polymer #Protein #Proteins #RNA

    • Bioinformatics | Group: @bioinformatics
    #BigData #Bioinformatics #RStats

    • Biology | Group: [email protected]
    #Biochemistry #Biology #Biomes #Botany #Ecology #Ecosystem #Evolution #Genetics #Habitat #LifeCycle #MarineBiology #Microbiology #Zoology

    • Biomaterial Science
    #Biofilm #Biofilms #Biologics #Biomaterials #Biotechnology #MaterialsScience #Nanotechnology #SustainableDesign #SyntheticBiology

    • Biomedical Science
    #Biomedical #BiomedicalEngineering #BiomedicalScience #NetworkMedicine #SystemsBiology

    • Botany
    #Botany #Botanical #Botanist #FloraIncognita #Florespondence IAmABotanist #Phenology #PlantBiology #PlantCells #PlantID #PlantIdentification

    • Cell Biology | Group: @cellbiology
    #CellBiology #CellDivision #CellMigration #Chloroplast #Cilium #Cytoskeleton #EndoplasmicReticulum #Eukaryotes #Golgi #Lipids #Macrophages #Membrane #Membranes #Microtubules #Mitochondria #Nucleus #Organelle #Organoids #Ribosome #SingleCell

    • Developmental Biology
    #ChildDevelopment #Connectome #Connectomics #DevelopmentalBiology #Embryology #Embryos #EvoDevo #GeneRegulation #Pregnancy #Proteomics #ReproSci #SexDet #StemCells #Transcriptomics

    • Ecology | Group: @ecology
    #AgroEcology #BehavioralEcology #BehaviouralEcology #Biodiversity #BiodiversityCrisis #BiodiversityLoss #Biogeography #ConservationBiology #Ecocide #EcoGrief #Ecological #EcologicalMonitoring #EcologicalSurvey #Ecology #Ecosystem #ForestEcology #Habitat #InvasionEcology #InvasiveSpecies #MassExtinction #OldGrowth #Riparian #WildCounts

    • Entomology | Group: @entomology
    #Beetles #Bugs #Coleoptera #Crustaceans #Entomologia #Entomology #Hemiptera #Hymenoptera #iNaturalist #Insect #Insects #InsectPhotography #Invertebrates #Isopods #Lepidoptera #Metamorphosis #Orthoptera #Pupa #Taxonomy

    • Genetics
    #BasePair #CellDivision #Chromosome #Chromosomes #Clone #Epigenetics #DNA #Gene #GeneExpression #GeneRegulation #GeneticallyModified #Genetics #Genome #Genomics #GMO #Meiosis #Mitosis #Mutation #RNAseq #Telomeres #Variants

    • Immunology
    #Antibodies #Antibody #Antigen #AutoImmune #BCells #Immune #ImmuneSystem #Immunity #ImmunoCompromised #Immunology #ImmunoTherapy #Interferon #Macrophages #Monoclonal #MonoclonalAntibodies (#mAbs) #Neutrophils #TCell #Vaccinated #Vaccine #Viralimmunology

    • Marine Science
    #Acidification #Algae #Aquatic #Cetaceans #Coral #CoralBleaching #CoralReefs #DeepSea #Diatoms #Estuary #Eutrophication #Kelp #KelpForest #MarineBiology #MarineLife #MarineMammals #MarineScience #MarineTaxonomy #Oceanography #Oceans #OceanWarming #Phytoplankton #Reefs #SeaBed #SeaFloor #SeaGrass #Seaweed #ScubaDiving #Snorkeling #UnderWaterPhotography #Zooplankton

    • Microbiology | Group: @microbiology
    #Antibiotics #AntiMicrobial #AntiMicrobialResistance (#AMR) #Bacteria #Bacterial #Bacteriophage #Bacteriology #Cilia #Microbes #Microbial #MicrobialEcology #Microbiology #Microbiome #Microbiota #MicroOrganisms #Phage #Protists

    #EColi #Legionella #Pseudomonas #Salmonella #Streptomyces

    • Molecular Biology | Group: @molecularbiology
    #Biophysics #CellBiology #MolecularBiology #MolecularEvolution #ProteinEngineering #ProteinStructure #Proteomics #StructuralBiology

    • Mycology | Group: @mycology
    #Fungi #Fungiverse #Mushrooms #Mycelium #Mycologists #Mycology #Mycophile #Spores #Sporespondence

    • Ornithology | Group: @ornithology
    #BirdID #Birding #BirdMigration #BirdPhotography #BirdResearch #BirdsOfMastodon #Corvid #eBird #Migration #Nesting #Oology #Ornithology #Raptor #SeaBirds #ShoreBirds

    • Virology | Group: @virology
    #AntiViral #AvianFlu #Bacteriophage #BirdFlu #CoronaVirus #COVID #COVID19 #GiantViruses #HIV #InfectiousDisease #Ebola #Measles #Phage #SARS #SARSCoV2 #Vaccine #Vaccines #ViralLoad #Viralimmunology #ViralPersistence #Variants #Virology #Virome #Virus #Viruses

    • Zoology
    #Animals #Biology #Zoologist #Zoology

    (Click to access Scientists in the Formal, Natural & Social Sciences)

    (See Index for More Hashtags)

    #SciFedi #LifeSciences

  6. Latest publication from when I was working at the UMC Utrecht: nature.com/articles/s44161-022

    Bulk #RNAseq of advanced carotid plaques from 654 patients. This data yielded five plaque types that correlate with clinical representation. And add an additional layer of information on top of the standard #histology.

    Also #scRNAseq #GWAS #macrophages #SMC

    #atherosclerosis #CoronaryArteryDisease (CAD)

  7. In 2011, Schwanhäusser, et al. (Nature, 473(7347) measured & levels for 5000 genes in cells and informed us 👇

    "Protein & mRNA levels correlates 0.41"

    Yet, demands:

    1. validated by
    2. based