#rnaseq — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #rnaseq, aggregated by home.social.
-
Bioinformatician - Lung Cancer Omics and Biomarkers
IRCCS Casa della Sofferenza FoundationSee the full job description on jobRxiv: https://jobrxiv.org/job/irccs-casa-della-sofferenza-foundation-27778-bioinformatician-lung-cancer-omics-and-biomarkers/
#bioinformatics #biomarkers #lungcancer #RNAseq #spatialbiology #ScienceJobs #hiring #research
https://jobrxiv.org/job/irccs-casa-della-sofferenza-foundation-27778-bioinformatician-lung-cancer-omics-and-biomarkers/?fsp_sid=14608 -
New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
-
🧬 Can AI truly decode gene expression, or is it being misled by too much data?
🔗 Artificial Intelligence in Bulk RNA-Seq: Challenges and Potential Solutions. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0039
📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj
#ArtificialIntelligence #MachineLearning #Bioinformatics #Genomics #RNAseq #ComputationalBiology #SystemsBiology #AI #PrecisionMedicine #BigData #AIinHealthcare
-
[Edit] I think I finally have some winners WITH cell identities, though I had to dig for that part. Thanks!
Anyone working in #Genomics #SingleCell #RNASeq aware of a good data source for human kidney single-cell data that has *labeled* cell types.
We have a #GWAS that the target tissue would be kidneys. I'm stuck doing cell type analyses until I can find some labeled cell type data to connect back to the association data.
-
🎓 EuroBioC2025 Bioconductor Carpentry Workshops – registration now open!
📍 Barcelona | 📅 15–16 Sept 2025
Bulk & single-cell RNA-seq analysis with expert instructors.
-
CW: Long Hashtag List for the Life Sciences
Life Sciences Hashtags
• Animal Behaviour
#AnimalBehavior #AnimalBehaviour #AnimalCognition #AnimalPsychology #AnimalResearch #AnimalSocieties #AnimalStudies #BehavioralEcology #BehaviouralEcology #BehavioralScience #BehaviouralScience #CameraTraps #ComparativeCognition #CriticalAnimalStudies #Learning #Memory #PositiveReinforcement #Sociobiology #TrailCam• Astrobiology
#AlienLife #Astrobiology #Biosignatures #Cryosphere DeepIce #EarthScience #Exoplanets #GeoScience #Habitability #Karst #MicroHabitats #OceanWorlds #OriginOfLife #PlanetaryCaves #PlanetaryScience• Behaviour Science
#AnthroZoology #Behavior #Behaviour #Behaviour2023 #BehavioralScience #BehaviouralScience #Biopsychology #CognitiveDevelopment #ComparativeCognition #DevelopmentalPsychology #Ethology #Learning #Memory #Neuroethology #PhilosophyOfMind #PleasureActivism #Psychology #SelfOrganisation #SelfOrganization #SocialNetwork• Biochemistry | Group: @biochemistry
#Actin #AminoAcids #Biochemical #Biochemistry #Catalyst #Catalysis #DNA #Enzyme #Enzymes #Hormones #IonChannels #Kinetics #Metabolism #Metabolomics #mRNA #Peptides #Polymer #Protein #Proteins #RNA• Bioinformatics | Group: @bioinformatics
#BigData #Bioinformatics #RStats• Biology | Group: [email protected]
#Biochemistry #Biology #Biomes #Botany #Ecology #Ecosystem #Evolution #Genetics #Habitat #LifeCycle #MarineBiology #Microbiology #Zoology• Biomaterial Science
#Biofilm #Biofilms #Biologics #Biomaterials #Biotechnology #MaterialsScience #Nanotechnology #SustainableDesign #SyntheticBiology• Biomedical Science
#Biomedical #BiomedicalEngineering #BiomedicalScience #NetworkMedicine #SystemsBiology• Botany
#Botany #Botanical #Botanist #FloraIncognita #Florespondence IAmABotanist #Phenology #PlantBiology #PlantCells #PlantID #PlantIdentification• Cell Biology | Group: @cellbiology
#CellBiology #CellDivision #CellMigration #Chloroplast #Cilium #Cytoskeleton #EndoplasmicReticulum #Eukaryotes #Golgi #Lipids #Macrophages #Membrane #Membranes #Microtubules #Mitochondria #Nucleus #Organelle #Organoids #Ribosome #SingleCell• Developmental Biology
#ChildDevelopment #Connectome #Connectomics #DevelopmentalBiology #Embryology #Embryos #EvoDevo #GeneRegulation #Pregnancy #Proteomics #ReproSci #SexDet #StemCells #Transcriptomics• Ecology | Group: @ecology
#AgroEcology #BehavioralEcology #BehaviouralEcology #Biodiversity #BiodiversityCrisis #BiodiversityLoss #Biogeography #ConservationBiology #Ecocide #EcoGrief #Ecological #EcologicalMonitoring #EcologicalSurvey #Ecology #Ecosystem #ForestEcology #Habitat #InvasionEcology #InvasiveSpecies #MassExtinction #OldGrowth #Riparian #WildCounts• Entomology | Group: @entomology
#Beetles #Bugs #Coleoptera #Crustaceans #Entomologia #Entomology #Hemiptera #Hymenoptera #iNaturalist #Insect #Insects #InsectPhotography #Invertebrates #Isopods #Lepidoptera #Metamorphosis #Orthoptera #Pupa #Taxonomy• Genetics
#BasePair #CellDivision #Chromosome #Chromosomes #Clone #Epigenetics #DNA #Gene #GeneExpression #GeneRegulation #GeneticallyModified #Genetics #Genome #Genomics #GMO #Meiosis #Mitosis #Mutation #RNAseq #Telomeres #Variants• Immunology
#Antibodies #Antibody #Antigen #AutoImmune #BCells #Immune #ImmuneSystem #Immunity #ImmunoCompromised #Immunology #ImmunoTherapy #Interferon #Macrophages #Monoclonal #MonoclonalAntibodies (#mAbs) #Neutrophils #TCell #Vaccinated #Vaccine #Viralimmunology• Marine Science
#Acidification #Algae #Aquatic #Cetaceans #Coral #CoralBleaching #CoralReefs #DeepSea #Diatoms #Estuary #Eutrophication #Kelp #KelpForest #MarineBiology #MarineLife #MarineMammals #MarineScience #MarineTaxonomy #Oceanography #Oceans #OceanWarming #Phytoplankton #Reefs #SeaBed #SeaFloor #SeaGrass #Seaweed #ScubaDiving #Snorkeling #UnderWaterPhotography #Zooplankton• Microbiology | Group: @microbiology
#Antibiotics #AntiMicrobial #AntiMicrobialResistance (#AMR) #Bacteria #Bacterial #Bacteriophage #Bacteriology #Cilia #Microbes #Microbial #MicrobialEcology #Microbiology #Microbiome #Microbiota #MicroOrganisms #Phage #Protists#EColi #Legionella #Pseudomonas #Salmonella #Streptomyces
• Molecular Biology | Group: @molecularbiology
#Biophysics #CellBiology #MolecularBiology #MolecularEvolution #ProteinEngineering #ProteinStructure #Proteomics #StructuralBiology• Mycology | Group: @mycology
#Fungi #Fungiverse #Mushrooms #Mycelium #Mycologists #Mycology #Mycophile #Spores #Sporespondence• Ornithology | Group: @ornithology
#BirdID #Birding #BirdMigration #BirdPhotography #BirdResearch #BirdsOfMastodon #Corvid #eBird #Migration #Nesting #Oology #Ornithology #Raptor #SeaBirds #ShoreBirds• Virology | Group: @virology
#AntiViral #AvianFlu #Bacteriophage #BirdFlu #CoronaVirus #COVID #COVID19 #GiantViruses #HIV #InfectiousDisease #Ebola #Measles #Phage #SARS #SARSCoV2 #Vaccine #Vaccines #ViralLoad #Viralimmunology #ViralPersistence #Variants #Virology #Virome #Virus #Viruses• Zoology
#Animals #Biology #Zoologist #Zoology(Click to access Scientists in the Formal, Natural & Social Sciences)
-
Latest publication from when I was working at the UMC Utrecht: https://www.nature.com/articles/s44161-022-00171-0
Bulk #RNAseq of advanced carotid plaques from 654 patients. This data yielded five plaque types that correlate with clinical representation. And add an additional layer of information on top of the standard #histology.
Also #scRNAseq #GWAS #macrophages #SMC
-
In 2011, Schwanhäusser, et al. (Nature, 473(7347) measured #absolute #protein & #mRNA levels for 5000 genes in #mamalian cells and informed us 👇
"Protein & mRNA levels correlates 0.41"
Yet, #Reviewer2 demands:
1. #Proteomics validated by #qPCR
2. #RNAseq based #biomarkers