#taxonomicclassification — Public Fediverse posts

Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.5 - v1.2.5 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.5

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.5 - v1.2.5 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.5

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.4 - v1.2.4 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.4

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.4 - v1.2.4 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.4

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.3 - v1.2.3 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.3

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.3 - v1.2.3 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.3

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.2 - v1.2.2 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.2

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.2 - v1.2.2 - Bouncy Basenji Patch!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.2

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.1 - v1.2.1 - Bouncy Basenji Patch [2024-11-28]!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.1

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.1 - v1.2.1 - Bouncy Basenji Patch [2024-11-28]!

Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.1

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.12.0 - Ampliseq Version 2.12.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.12.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.12.0 - Ampliseq Version 2.12.0!

Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.12.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/detaxizer v1.1.0 - detaxizer 1.1.0 - Kombjuudr!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.1.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/detaxizer v1.1.0 - detaxizer 1.1.0 - Kombjuudr!

Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.1.0

#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

🚨 Preprint alert 🚨

Interested in the rationale and functionality behind a high quality #nextflow pipeline for simultaneous #TaxonomicClassification for shotgun #metagenomics (e.g. #microbiome , #pathogen , #clinicalmetagenomics , #sedaDNA ), that on top allows simultaneous profiling against multiple databases for all tools in the pipeline?

Please read and give feedback 👇

https://www.biorxiv.org/content/10.1101/2023.10.20.563221v1

Computational resource guidance coming in a few of months 👍 b4 submitting to @PeerCommunityIn 😉

🚨 Preprint alert 🚨

Interested in the rationale and functionality behind a high quality #nextflow pipeline for simultaneous #TaxonomicClassification for shotgun #metagenomics (e.g. #microbiome , #pathogen , #clinicalmetagenomics , #sedaDNA ), that on top allows simultaneous profiling against multiple databases for all tools in the pipeline?

Please read and give feedback 👇

https://www.biorxiv.org/content/10.1101/2023.10.20.563221v1

Computational resource guidance coming in a few of months 👍 b4 submitting to @PeerCommunityIn 😉