#metagenomics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #metagenomics, aggregated by home.social.
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https://www.europesays.com/uk/1216933/ Gut microbiome maturation in early childhood interacts with host genetics to predict type 1 diabetes risk #general #Health #LifeSciences #metabolism #Metagenomics #PredictiveMarkers #RiskFactors #Type1Diabetes #UK #UnitedKingdom
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https://www.europesays.com/ie/696912/ Endotracheal virome and metatranscriptome of preterm neonates at birth in relation with progression to bronchopulmonary dysplasia #Éire #general #IE #Ireland #LifeSciences #Metagenomics #Microbiome #Science
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Pipeline release! nf-core/metatdenovo v1.4.1 - BBNorm Singularity/Apptainer TMPDIR fix!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.1#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.1 - BBNorm Singularity/Apptainer TMPDIR fix!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.1#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.1 - BBNorm Singularity/Apptainer TMPDIR fix!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.1#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.1 - BBNorm Singularity/Apptainer TMPDIR fix!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.1#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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🎉 Grab a coffee and join our virtual Paper Party!
We’re celebrating two exciting publications—and the outstanding early-career researchers behind them.
Join us online to discover the stories behind these remarkable scientific achievements!
📆 Date: 7 September, 2026
🕒 Time: 2:00–3:00 PM CEST/CET (Berlin time)
🔗 More information: https://nfdi4microbiota.de/community/coffee_talk_series/ -
🎉 Grab a coffee and join our virtual Paper Party!
We’re celebrating two exciting publications—and the outstanding early-career researchers behind them.
Join us online to discover the stories behind these remarkable scientific achievements!
📆 Date: 7 September, 2026
🕒 Time: 2:00–3:00 PM CEST/CET (Berlin time)
🔗 More information: https://nfdi4microbiota.de/community/coffee_talk_series/ -
🎉 Grab a coffee and join our virtual Paper Party!
We’re celebrating two exciting publications—and the outstanding early-career researchers behind them.
Join us online to discover the stories behind these remarkable scientific achievements!
📆 Date: 7 September, 2026
🕒 Time: 2:00–3:00 PM CEST/CET (Berlin time)
🔗 More information: https://nfdi4microbiota.de/community/coffee_talk_series/ -
🎉 Grab a coffee and join our virtual Paper Party!
We’re celebrating two exciting publications—and the outstanding early-career researchers behind them.
Join us online to discover the stories behind these remarkable scientific achievements!
📆 Date: 7 September, 2026
🕒 Time: 2:00–3:00 PM CEST/CET (Berlin time)
🔗 More information: https://nfdi4microbiota.de/community/coffee_talk_series/ -
https://www.europesays.com/videos/86530/ ‘Revolutionary’ metagenomics method can identify illness with just one test #Health #HEALTHTEST #hospital #illness #lab #METAGENOMICS #nhs #SkyNews #STTHOMASHOSPITAL #Test #uk
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📢 Call for Papers: Computational and Experimental Advances in Carbohydrate-Active Enzymes
⏳ Submission Deadline: 31 May 2027
🔗 Submit your work: https://spj.science.org/journal/csbj/si/carbohydrate-active-enzymes
#CallForPapers #CAZymes #CarbohydrateActiveEnzymes #EnzymeEngineering #ComputationalBiology #StructuralBiology #Bioinformatics #ArtificialIntelligence #MachineLearning #ProteinEngineering #SyntheticBiology #Metagenomics #Biotechnology #BiomassValorization #CircularBioeconomy
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📢 Call for Papers: Computational and Experimental Advances in Carbohydrate-Active Enzymes
⏳ Submission Deadline: 31 May 2027
🔗 Submit your work: https://spj.science.org/journal/csbj/si/carbohydrate-active-enzymes
#CallForPapers #CAZymes #CarbohydrateActiveEnzymes #EnzymeEngineering #ComputationalBiology #StructuralBiology #Bioinformatics #ArtificialIntelligence #MachineLearning #ProteinEngineering #SyntheticBiology #Metagenomics #Biotechnology #BiomassValorization #CircularBioeconomy
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📢 Call for Papers: Computational and Experimental Advances in Carbohydrate-Active Enzymes
⏳ Submission Deadline: 31 May 2027
🔗 Submit your work: https://spj.science.org/journal/csbj/si/carbohydrate-active-enzymes
#CallForPapers #CAZymes #CarbohydrateActiveEnzymes #EnzymeEngineering #ComputationalBiology #StructuralBiology #Bioinformatics #ArtificialIntelligence #MachineLearning #ProteinEngineering #SyntheticBiology #Metagenomics #Biotechnology #BiomassValorization #CircularBioeconomy
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📢 Call for Papers: Computational and Experimental Advances in Carbohydrate-Active Enzymes
⏳ Submission Deadline: 31 May 2027
🔗 Submit your work: https://spj.science.org/journal/csbj/si/carbohydrate-active-enzymes
#CallForPapers #CAZymes #CarbohydrateActiveEnzymes #EnzymeEngineering #ComputationalBiology #StructuralBiology #Bioinformatics #ArtificialIntelligence #MachineLearning #ProteinEngineering #SyntheticBiology #Metagenomics #Biotechnology #BiomassValorization #CircularBioeconomy
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New Visualization: The Tumor Microbiome Landscape
I am sharing a heatmap-style visualization titled "The Tumor Microbiome Landscape: Genus-Level Bacterial Enrichment Across Human Cancers"
#TumorMicrobiome #CancerMicrobiome #Metagenomics #Oncology #Fusobacterium #MicrobialEcology #DataVisualization #TranslationalResearch
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New Visualization: The Tumor Microbiome Landscape
I am sharing a heatmap-style visualization titled "The Tumor Microbiome Landscape: Genus-Level Bacterial Enrichment Across Human Cancers"
#TumorMicrobiome #CancerMicrobiome #Metagenomics #Oncology #Fusobacterium #MicrobialEcology #DataVisualization #TranslationalResearch
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New Visualization: The Tumor Microbiome Landscape
I am sharing a heatmap-style visualization titled "The Tumor Microbiome Landscape: Genus-Level Bacterial Enrichment Across Human Cancers"
#TumorMicrobiome #CancerMicrobiome #Metagenomics #Oncology #Fusobacterium #MicrobialEcology #DataVisualization #TranslationalResearch
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New Visualization: The Tumor Microbiome Landscape
I am sharing a heatmap-style visualization titled "The Tumor Microbiome Landscape: Genus-Level Bacterial Enrichment Across Human Cancers"
#TumorMicrobiome #CancerMicrobiome #Metagenomics #Oncology #Fusobacterium #MicrobialEcology #DataVisualization #TranslationalResearch
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https://www.alojapan.com/1530040/uncovering-the-microbiome-landscape-in-sashimi-delicacies/ Uncovering the microbiome landscape in sashimi delicacies #bacteria #FoodMicrobiota #HumanitiesAndSocialSciences #Metagenomics #multidisciplinary #salmon #sashimi #science #Sequencing #Tilapia Oehlenschläger, J. Seafood: Nutritional benefits and risk aspects. Int. J. Vitam. Nutr. Res. 82, 168–176 (2012). Article PubMed Google Scholar McManus, A. & Newton, W. Seafood, Nutrition and Human Health: A Synopsis of the Nutritional Benefits of Con
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https://www.alojapan.com/1530040/uncovering-the-microbiome-landscape-in-sashimi-delicacies/ Uncovering the microbiome landscape in sashimi delicacies #bacteria #FoodMicrobiota #HumanitiesAndSocialSciences #Metagenomics #multidisciplinary #salmon #sashimi #science #Sequencing #Tilapia Oehlenschläger, J. Seafood: Nutritional benefits and risk aspects. Int. J. Vitam. Nutr. Res. 82, 168–176 (2012). Article PubMed Google Scholar McManus, A. & Newton, W. Seafood, Nutrition and Human Health: A Synopsis of the Nutritional Benefits of Con
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🦣 If you are working on #ancientDNA and #metagenomics, and looking to perform metagenomic _de novo_ assembly, you might be interested in the latest paper from myself, @alexhbnr , Maxime Borry, and Christina Warinner
📑 De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag.
https://doi.org/10.1371/journal.pcbi.1014591
👨💻 Comes with a companion tutorial on how to apply our recommendations to nf-core/mag with the dedicated --ancient_dna mode!
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🦣 If you are working on #ancientDNA and #metagenomics, and looking to perform metagenomic _de novo_ assembly, you might be interested in the latest paper from myself, @alexhbnr , Maxime Borry, and Christina Warinner
📑 De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag.
https://doi.org/10.1371/journal.pcbi.1014591
👨💻 Comes with a companion tutorial on how to apply our recommendations to nf-core/mag with the dedicated --ancient_dna mode!
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🦣 If you are working on #ancientDNA and #metagenomics, and looking to perform metagenomic _de novo_ assembly, you might be interested in the latest paper from myself, @alexhbnr , Maxime Borry, and Christina Warinner
📑 De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag.
https://doi.org/10.1371/journal.pcbi.1014591
👨💻 Comes with a companion tutorial on how to apply our recommendations to nf-core/mag with the dedicated --ancient_dna mode!
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🦣 If you are working on #ancientDNA and #metagenomics, and looking to perform metagenomic _de novo_ assembly, you might be interested in the latest paper from myself, @alexhbnr , Maxime Borry, and Christina Warinner
📑 De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag.
https://doi.org/10.1371/journal.pcbi.1014591
👨💻 Comes with a companion tutorial on how to apply our recommendations to nf-core/mag with the dedicated --ancient_dna mode!
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Pipeline release! nf-core/proteinfamilies v2.5.0 - Zinc Heron!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.5.0#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/proteinfamilies v2.5.0 - Zinc Heron!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.5.0#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/proteinfamilies v2.5.0 - Zinc Heron!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.5.0#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/proteinfamilies v2.5.0 - Zinc Heron!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.5.0#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/mag v5.5.0 - mag 5.5.0 - Purple Penguin!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.5.0#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
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The planktonic microbiome of the Great Barrier Reef
Tully, B. J., Graham, E. D. & Heidelberg, J. F. The reconstruction of 2,631 draft metagenome-assembled genomes from…
#NewsBeep #News #Science #GB #HumanitiesandSocialSciences #Metagenomics #Microbialecology #Microbiome #multidisciplinary #UK #UnitedKingdom #Watermicrobiology
https://www.newsbeep.com/uk/707066/ -
We just made a new release of SKiM!
https://codeberg.org/SCoRE-Group/SKiM
SKiM is a real-time, memory-efficient tool for classifying error-prone Oxford Nanopore Technologies reads in metagenomic datasets. SKiM typically requires only the first few hundred bases of a read to make the classification, which is ideal to combine with the ONT's adaptive sampling.
SKiM is also a database format and compression technique for k-mers.
Check it out!
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We just made a new release of SKiM!
https://codeberg.org/SCoRE-Group/SKiM
SKiM is a real-time, memory-efficient tool for classifying error-prone Oxford Nanopore Technologies reads in metagenomic datasets. SKiM typically requires only the first few hundred bases of a read to make the classification, which is ideal to combine with the ONT's adaptive sampling.
SKiM is also a database format and compression technique for k-mers.
Check it out!
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We just made a new release of SKiM!
https://codeberg.org/SCoRE-Group/SKiM
SKiM is a real-time, memory-efficient tool for classifying error-prone Oxford Nanopore Technologies reads in metagenomic datasets. SKiM typically requires only the first few hundred bases of a read to make the classification, which is ideal to combine with the ONT's adaptive sampling.
SKiM is also a database format and compression technique for k-mers.
Check it out!
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We just made a new release of SKiM!
https://codeberg.org/SCoRE-Group/SKiM
SKiM is a real-time, memory-efficient tool for classifying error-prone Oxford Nanopore Technologies reads in metagenomic datasets. SKiM typically requires only the first few hundred bases of a read to make the classification, which is ideal to combine with the ONT's adaptive sampling.
SKiM is also a database format and compression technique for k-mers.
Check it out!
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https://www.europesays.com/ie/576770/ Nine gut bacteria linked to future type 2 diabetes risk #Anatomy #bacteria #blood #Cell #Chronic #diabetes #diet #DietaryFiber #Éire #GlobalHealth #Glucose #Health #IE #inflammation #Insulin #InsulinResistance #Ireland #medicine #Metagenomics #Metformin #Microbiome #Pathophysiology #Type2Diabetes
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Pipeline release! nf-core/createtaxdb v3.1.0 - v3.1.0 - Seductive Siren - [2026-07-03]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.1.0#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/createtaxdb v3.1.0 - v3.1.0 - Seductive Siren - [2026-07-03]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.1.0#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/createtaxdb v3.1.0 - v3.1.0 - Seductive Siren - [2026-07-03]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.1.0#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/createtaxdb v3.1.0 - v3.1.0 - Seductive Siren - [2026-07-03]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.1.0#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27!
(Meta-)genome screening for functional and natural product gene sequences
Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0#amp #amr #antibioticresistance #antimicrobialpeptides #antimicrobialresistancegenes #arg #assembly #bgc #biosyntheticgeneclusters #contigs #function #metagenomics #naturalproducts #screening #secondarymetabolites #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more!
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0#eukaryotes #metagenomics #metatranscriptomics #prokaryotes #viruses #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
