#metagenomics — Public Fediverse posts

Pipeline release! nf-core/proteinfamilies v2.3.0 - Iron Wolf!
Generation and updating of protein families
Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.3.0

#metagenomics #proteinfamilies #nfcore #openscience #nextflow #bioinformatics

The #microbial #diversity of #dynamic #ecosystems can today be assessed using more efficient methods. M. F. Peña-Valencia et al. (2026) identified potential #polyethyleneterephthalate (#PET)-degrading #enzymes from #mangrove #soil using #AI, #3D #structuralanalysis and #metagenomics. Some of these enzymes could be assigned to the bacterial genus #Microbulbifer.

© #StefanFWirth

Please support me
https://ko-fi.com/sfwirth

Ref
https://doi.org/10.1038/s41467-026-71548-z

#Illustrations
©S.F.Wirth, AI assisted

The #microbial #diversity of #dynamic #ecosystems can today be assessed using more efficient methods. M. F. Peña-Valencia et al. (2026) identified potential #polyethyleneterephthalate (#PET)-degrading #enzymes from #mangrove #soil using #AI, #3D #structuralanalysis and #metagenomics. Some of these enzymes could be assigned to the bacterial genus #Microbulbifer.

© #StefanFWirth

Please support me
https://ko-fi.com/sfwirth

Ref
https://doi.org/10.1038/s41467-026-71548-z

#Illustrations
©S.F.Wirth, AI assisted

The #microbial #diversity of #dynamic #ecosystems can today be assessed using more efficient methods. M. F. Peña-Valencia et al. (2026) identified potential #polyethyleneterephthalate (#PET)-degrading #enzymes from #mangrove #soil using #AI, #3D #structuralanalysis and #metagenomics. Some of these enzymes could be assigned to the bacterial genus #Microbulbifer.

© #StefanFWirth

Please support me
https://ko-fi.com/sfwirth

Ref
https://doi.org/10.1038/s41467-026-71548-z

#Illustrations
©S.F.Wirth, AI assisted

The #microbial #diversity of #dynamic #ecosystems can today be assessed using more efficient methods. M. F. Peña-Valencia et al. (2026) identified potential #polyethyleneterephthalate (#PET)-degrading #enzymes from #mangrove #soil using #AI, #3D #structuralanalysis and #metagenomics. Some of these enzymes could be assigned to the bacterial genus #Microbulbifer.

© #StefanFWirth

Please support me
https://ko-fi.com/sfwirth

Ref
https://doi.org/10.1038/s41467-026-71548-z

#Illustrations
©S.F.Wirth, AI assisted

The #microbial #diversity of #dynamic #ecosystems can today be assessed using more efficient methods. M. F. Peña-Valencia et al. (2026) identified potential #polyethyleneterephthalate (#PET)-degrading #enzymes from #mangrove #soil using #AI, #3D #structuralanalysis and #metagenomics. Some of these enzymes could be assigned to the bacterial genus #Microbulbifer.

© #StefanFWirth

Please support me
https://ko-fi.com/sfwirth

Ref
https://doi.org/10.1038/s41467-026-71548-z

#Illustrations
©S.F.Wirth, AI assisted

Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/3.0.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0

#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Microbiome Bioinformatician (Postdoc) - Metagenomics and Metaproteomics
Charité Universitätsmedizin Berlin

Come join us a #bioinformatics / #computationalbiology postdoc to explore the #microbiome using #metaproteomics and #metagenomics

See the full job description on jobRxiv: https://jobrxiv.org/job/charite-universitatsmedizin-berlin-27778-mic...
https://jobrxiv.org/job/charite-universitatsmedizin-berlin-27778-microbiome-bioinformatician-postdoc-metagenomics-and-metaproteomics/?fsp_sid=11065

Microbiome Bioinformatician (Postdoc) - Metagenomics and Metaproteomics
Charité Universitätsmedizin Berlin

Come join us a #bioinformatics / #computationalbiology postdoc to explore the #microbiome using #metaproteomics and #metagenomics

See the full job description on jobRxiv: https://jobrxiv.org/job/charite-universitatsmedizin-berlin-27778-mic...
https://jobrxiv.org/job/charite-universitatsmedizin-berlin-27778-microbiome-bioinformatician-postdoc-metagenomics-and-metaproteomics/?fsp_sid=11033

#metagenomics #microbiome #evolution #ecology #phylogenomics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Wholegrain rye changes gut bacteria and lowers inflammation in obesity trial

A 12-week randomized trial found that wholegrain rye did not beat refined wheat for weight loss, but it…
#NewsBeep #News #Health #Anti-Inflammatory #appetite #Bacteria #biomarker #Blood #CA #Canada #Cardiometabolic #Diet #Efficacy #FattyAcids #Inflammation #Insulin #InsulinResistance #Metagenomics #Microbiome #Nutrition #obesity #research #shortchainfattyacids #WeightLoss #Wheat
https://www.newsbeep.com/ca/558596/

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/taxprofiler v1.2.6 - v1.2.6 - Bouncy Basenji Patch!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.6

#classification #illumina #longreads #metagenomics #microbiome #nanopore #pathogen #profiling #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/createtaxdb v2.1.0 - v2.1.0 - Gracious Goblin - [2026-02-10]!
Parallelised and automated construction of metagenomic classifier databases of different tools
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.1.0

#database #databasebuilder #metagenomicprofiling #metagenomics #profiling #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics

Integrated Metagenomic and Metabolomic Analysis Reveals Regional Style Differences in Maotai-Flavour #Baijiu

https://www.sciencedirect.com/science/article/pii/S2666517426000131 #OpenAccess #metabolomics #metagenomics #microbiology

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/mag v5.4.0 - mag 5.4.0 - Yellow Frog!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics