#metabolomics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #metabolomics, aggregated by home.social.
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It's always fun meeting with high-school lab assistants and getting to explain PCA (draw a banana!), where additive and proportional error come from (measure lots of times!), and that -omics data in general have these, regardless of technology.
Which reminded me of two of my favorite posters.
Visualization of error in omics technologies
https://figshare.com/articles/poster/Characterization_and_Visualization_of_Error_in_Omics_Technologies/1431927?file=2191588Visualizing the effects of data transformations
https://figshare.com/articles/poster/Visualizing_the_Effects_of_Data_Transformations_on_Errors/3168775?file=4933519 -
It's always fun meeting with high-school lab assistants and getting to explain PCA (draw a banana!), where additive and proportional error come from (measure lots of times!), and that -omics data in general have these, regardless of technology.
Which reminded me of two of my favorite posters.
Visualization of error in omics technologies
https://figshare.com/articles/poster/Characterization_and_Visualization_of_Error_in_Omics_Technologies/1431927?file=2191588Visualizing the effects of data transformations
https://figshare.com/articles/poster/Visualizing_the_Effects_of_Data_Transformations_on_Errors/3168775?file=4933519 -
It's always fun meeting with high-school lab assistants and getting to explain PCA (draw a banana!), where additive and proportional error come from (measure lots of times!), and that -omics data in general have these, regardless of technology.
Which reminded me of two of my favorite posters.
Visualization of error in omics technologies
https://figshare.com/articles/poster/Characterization_and_Visualization_of_Error_in_Omics_Technologies/1431927?file=2191588Visualizing the effects of data transformations
https://figshare.com/articles/poster/Visualizing_the_Effects_of_Data_Transformations_on_Errors/3168775?file=4933519 -
It's always fun meeting with high-school lab assistants and getting to explain PCA (draw a banana!), where additive and proportional error come from (measure lots of times!), and that -omics data in general have these, regardless of technology.
Which reminded me of two of my favorite posters.
Visualization of error in omics technologies
https://figshare.com/articles/poster/Characterization_and_Visualization_of_Error_in_Omics_Technologies/1431927?file=2191588Visualizing the effects of data transformations
https://figshare.com/articles/poster/Visualizing_the_Effects_of_Data_Transformations_on_Errors/3168775?file=4933519 -
It's always fun meeting with high-school lab assistants and getting to explain PCA (draw a banana!), where additive and proportional error come from (measure lots of times!), and that -omics data in general have these, regardless of technology.
Which reminded me of two of my favorite posters.
Visualization of error in omics technologies
https://figshare.com/articles/poster/Characterization_and_Visualization_of_Error_in_Omics_Technologies/1431927?file=2191588Visualizing the effects of data transformations
https://figshare.com/articles/poster/Visualizing_the_Effects_of_Data_Transformations_on_Errors/3168775?file=4933519 -
new paper: "Computational metabolomics at scale: from open data to insight" https://doi.org/10.1016/j.copbio.2026.103557 #metabolomics
"Metabolomics stands at a pivotal moment where the volume, diversity, and richness of publicly available data offer unprecedented opportunities for discovery"
It describes the results from a series of Dagstuhl meeting. I attended a few (not this year). It gives a good overview of where the field may be going, and perhaps should be going. Happy to have been part of this community!
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new paper: "Computational metabolomics at scale: from open data to insight" https://doi.org/10.1016/j.copbio.2026.103557 #metabolomics
"Metabolomics stands at a pivotal moment where the volume, diversity, and richness of publicly available data offer unprecedented opportunities for discovery"
It describes the results from a series of Dagstuhl meeting. I attended a few (not this year). It gives a good overview of where the field may be going, and perhaps should be going. Happy to have been part of this community!
-
new paper: "Computational metabolomics at scale: from open data to insight" https://doi.org/10.1016/j.copbio.2026.103557 #metabolomics
"Metabolomics stands at a pivotal moment where the volume, diversity, and richness of publicly available data offer unprecedented opportunities for discovery"
It describes the results from a series of Dagstuhl meeting. I attended a few (not this year). It gives a good overview of where the field may be going, and perhaps should be going. Happy to have been part of this community!
-
new paper: "Computational metabolomics at scale: from open data to insight" https://doi.org/10.1016/j.copbio.2026.103557 #metabolomics
"Metabolomics stands at a pivotal moment where the volume, diversity, and richness of publicly available data offer unprecedented opportunities for discovery"
It describes the results from a series of Dagstuhl meeting. I attended a few (not this year). It gives a good overview of where the field may be going, and perhaps should be going. Happy to have been part of this community!
-
new paper: "Computational metabolomics at scale: from open data to insight" https://doi.org/10.1016/j.copbio.2026.103557 #metabolomics
"Metabolomics stands at a pivotal moment where the volume, diversity, and richness of publicly available data offer unprecedented opportunities for discovery"
It describes the results from a series of Dagstuhl meeting. I attended a few (not this year). It gives a good overview of where the field may be going, and perhaps should be going. Happy to have been part of this community!
-
Metabolomics of single-strain & co-cultures of 7 Fusarium strains causing #metabolome head blight reveals metabolic modifications induced by strain co-occurrence.
FHB #metabolomics reveals species‑specific biomarkers & interaction‑driven shifts in co‑cultures
#microbiology #agriculture #metabolome #Ag
https://davidojcius.blogspot.com/2026/08/how-fusarium-strain-co-occurrence.html
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Metabolomics of single-strain & co-cultures of 7 Fusarium strains causing #metabolome head blight reveals metabolic modifications induced by strain co-occurrence.
FHB #metabolomics reveals species‑specific biomarkers & interaction‑driven shifts in co‑cultures
#microbiology #agriculture #metabolome #Ag
https://davidojcius.blogspot.com/2026/08/how-fusarium-strain-co-occurrence.html
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Metabolomics of single-strain & co-cultures of 7 Fusarium strains causing #metabolome head blight reveals metabolic modifications induced by strain co-occurrence.
FHB #metabolomics reveals species‑specific biomarkers & interaction‑driven shifts in co‑cultures
#microbiology #agriculture #metabolome #Ag
https://davidojcius.blogspot.com/2026/08/how-fusarium-strain-co-occurrence.html
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Metabolomics of single-strain & co-cultures of 7 Fusarium strains causing #metabolome head blight reveals metabolic modifications induced by strain co-occurrence.
FHB #metabolomics reveals species‑specific biomarkers & interaction‑driven shifts in co‑cultures
#microbiology #agriculture #metabolome #Ag
https://davidojcius.blogspot.com/2026/08/how-fusarium-strain-co-occurrence.html
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Metabolomics of single-strain & co-cultures of 7 Fusarium strains causing #metabolome head blight reveals metabolic modifications induced by strain co-occurrence.
FHB #metabolomics reveals species‑specific biomarkers & interaction‑driven shifts in co‑cultures
#microbiology #agriculture #metabolome #Ag
https://davidojcius.blogspot.com/2026/08/how-fusarium-strain-co-occurrence.html
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New lab publication:
High-Quality Predicted Metabolite-Pathway Annotations Expand Pathway Coverage and Increase Enriched Pathway Detection Across Metabolomics Datasets, by Huckvale et al
https://www.mdpi.com/2218-1989/16/8/545
We show that the metabolite pathway annotation pipeline we've been building improves annotation enrichment results using GSEA on 990 datasets from Metabolomics Workbench.
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New lab publication:
High-Quality Predicted Metabolite-Pathway Annotations Expand Pathway Coverage and Increase Enriched Pathway Detection Across Metabolomics Datasets, by Huckvale et al
https://www.mdpi.com/2218-1989/16/8/545
We show that the metabolite pathway annotation pipeline we've been building improves annotation enrichment results using GSEA on 990 datasets from Metabolomics Workbench.
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New lab publication:
High-Quality Predicted Metabolite-Pathway Annotations Expand Pathway Coverage and Increase Enriched Pathway Detection Across Metabolomics Datasets, by Huckvale et al
https://www.mdpi.com/2218-1989/16/8/545
We show that the metabolite pathway annotation pipeline we've been building improves annotation enrichment results using GSEA on 990 datasets from Metabolomics Workbench.
-
New lab publication:
High-Quality Predicted Metabolite-Pathway Annotations Expand Pathway Coverage and Increase Enriched Pathway Detection Across Metabolomics Datasets, by Huckvale et al
https://www.mdpi.com/2218-1989/16/8/545
We show that the metabolite pathway annotation pipeline we've been building improves annotation enrichment results using GSEA on 990 datasets from Metabolomics Workbench.
-
New lab publication:
High-Quality Predicted Metabolite-Pathway Annotations Expand Pathway Coverage and Increase Enriched Pathway Detection Across Metabolomics Datasets, by Huckvale et al
https://www.mdpi.com/2218-1989/16/8/545
We show that the metabolite pathway annotation pipeline we've been building improves annotation enrichment results using GSEA on 990 datasets from Metabolomics Workbench.
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Novogene Europe expands single-cell sequencing capability at Cambridge Omics Centre
Novogene Europe, a multiomics research services partner, today announced that it has expanded its single-cell RNA sequencing capability…
#Europe #EU #Bioinformatics #Cell #Chromium #DevelopmentalBiology #Gene #GeneExpression #Genomics #immunology #Metabolomics #Multiomics #neuroscience #oncology #Research #RNA #RNASequencing #Transcriptomics
https://www.europesays.com/europe/103313/ -
Novogene Europe launches Untargeted Metabolomics Service at Cambridge Omics Centre
Novogene Europe, a multiomics research services partner, today announced that it has strengthened its position as a multiomics…
#NewsBeep #News #Health #AU #Australia #bioinformatics #Genomics #Lifescience #MassSpectrometry #Metabolite #Metabolomics #Microbiome #Molecule #Multiomics #Phenotype #research #Spectrometry #Transcriptomics
https://www.newsbeep.com/au/797668/ -
Novogene Europe launches Untargeted Metabolomics Service at Cambridge Omics Centre
Novogene Europe, a multiomics research services partner, today announced that it has strengthened its position as a multiomics…
#NewsBeep #News #Health #AU #Australia #bioinformatics #Genomics #Lifescience #MassSpectrometry #Metabolite #Metabolomics #Microbiome #Molecule #Multiomics #Phenotype #research #Spectrometry #Transcriptomics
https://www.newsbeep.com/au/797668/ -
https://www.europesays.com/uk/1086529/ Novogene Europe launches Untargeted Metabolomics Service at Cambridge Omics Centre #Bioinformatics #EU #Europe #European #Genomics #LifeScience #MassSpectrometry #Metabolite #metabolomics #Microbiome #Molecule #Multiomics #Phenotype #Research #Spectrometry #Transcriptomics
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https://www.europesays.com/ie/582646/ Ultra-processed foods leave behind metabolic “signature” in blood, study finds #cancer #Éire #Health #IE #Ireland #Metabolism #Metabolomics #UltraProcessedFoods #UPF
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Ultra-processed foods leave behind metabolic “signature” in blood, study finds https://www.byteseu.com/2190390/ #Cancer #Health #Metabolism #Metabolomics #UltraProcessedFoods #UPF
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Want to participate in a remote #Metabolomics conference?
Deadline for abstract submission to the International Electronic Conference on Metabolomics 2026 is July 17th.
Yes, it's funded by MDPI. I understand if you don't register because of that. But there are many genuinely good speakers who will be there, and yours truly will hopefully be presenting their work on trying to do QC/QA of the entirety of Metabolomics Workbench!
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Want to participate in a remote #Metabolomics conference?
Deadline for abstract submission to the International Electronic Conference on Metabolomics 2026 is July 17th.
Yes, it's funded by MDPI. I understand if you don't register because of that. But there are many genuinely good speakers who will be there, and yours truly will hopefully be presenting their work on trying to do QC/QA of the entirety of Metabolomics Workbench!
-
Want to participate in a remote #Metabolomics conference?
Deadline for abstract submission to the International Electronic Conference on Metabolomics 2026 is July 17th.
Yes, it's funded by MDPI. I understand if you don't register because of that. But there are many genuinely good speakers who will be there, and yours truly will hopefully be presenting their work on trying to do QC/QA of the entirety of Metabolomics Workbench!
-
Want to participate in a remote #Metabolomics conference?
Deadline for abstract submission to the International Electronic Conference on Metabolomics 2026 is July 17th.
Yes, it's funded by MDPI. I understand if you don't register because of that. But there are many genuinely good speakers who will be there, and yours truly will hopefully be presenting their work on trying to do QC/QA of the entirety of Metabolomics Workbench!
-
Want to participate in a remote #Metabolomics conference?
Deadline for abstract submission to the International Electronic Conference on Metabolomics 2026 is July 17th.
Yes, it's funded by MDPI. I understand if you don't register because of that. But there are many genuinely good speakers who will be there, and yours truly will hopefully be presenting their work on trying to do QC/QA of the entirety of Metabolomics Workbench!
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https://www.europesays.com/ie/572860/ Blood markers reveal metabolic impact of ultra-processed food consumption #blood #cancer #CardiovascularDisease #Cell #CellMetabolism #diabetes #Éire #FattyAcids #food #Health #IE #Ireland #Lipids #Metabolism #Metabolites #Metabolomics #Mortality #Nutrition #Obesity #Research #Type2Diabetes #UltraProcessedFood #UltraProcessedFoods
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https://www.europesays.com/at/258127/ Blutzucker als Risiko-Faktor: KI-gestützte Marker für beschleunigtes Gehirnaltern #AI #ARTIFICIALINTELLIGENCE #AT #Austria #Biomarker #BrainAging #Genomics #Gesundheit #Glukose #Health #KI #KünstlicheIntelligenz #London #Metabolomics #Mri #Österreich #UKBiobank
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Blood metabolism maps how lifestyle tracks function in cognitive aging
A new pathway-level analysis links diet and physical activity to blood metabolic patterns associated with mobility, cognition, independence,…
#NewsBeep #News #Health #Aging #AminoAcid #AU #Australia #Blood #Dementia #diet #Education #Inflammation #Metabolism #Metabolite #Metabolites #Metabolomics #Microbiome #Muscle #Nutrition #OxidativeStress #physicalactivity #stress
https://www.newsbeep.com/au/769150/ -
Blood metabolism maps how lifestyle tracks function in cognitive aging
A new pathway-level analysis links diet and physical activity to blood metabolic patterns associated with mobility, cognition, independence,…
#NewsBeep #News #Health #Aging #AminoAcid #AU #Australia #Blood #Dementia #diet #Education #Inflammation #Metabolism #Metabolite #Metabolites #Metabolomics #Microbiome #Muscle #Nutrition #OxidativeStress #physicalactivity #stress
https://www.newsbeep.com/au/769150/ -
The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
Study populationRotterdam Study The Rotterdam Study is a prospective population-based study from the Ommoord district of Rotterdam, The…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Health #Ageing #Alzheimer'sdisease #dataintegration #general #LifeSciences #Metabolomics #Systemsanalysis
https://www.newsbeep.com/us/726924/ -
The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
Study populationRotterdam Study The Rotterdam Study is a prospective population-based study from the Ommoord district of Rotterdam, The…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Health #Ageing #Alzheimer'sdisease #dataintegration #general #LifeSciences #Metabolomics #Systemsanalysis
https://www.newsbeep.com/us/726924/ -
https://www.europesays.com/uk/1050461/ The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome #Ageing #Alzheimer'sDisease #DataIntegration #general #Health #Healthcare #LifeSciences #metabolomics #SystemsAnalysis #UK #UnitedKingdom
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The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
Study populationRotterdam Study The Rotterdam Study is a prospective population-based study from the Ommoord district of Rotterdam, The…
#NewsBeep #News #Healthcare #Ageing #Alzheimer'sdisease #Dataintegration #general #Health #healthcare #LifeSciences #Metabolomics #Systemsanalysis #UK #UnitedKingdom
https://www.newsbeep.com/uk/658104/ -
The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
Study populationRotterdam Study The Rotterdam Study is a prospective population-based study from the Ommoord district of Rotterdam, The…
#NewsBeep #News #Healthcare #Ageing #Alzheimer'sDisease #AU #Australia #Dataintegration #general #Health #LifeSciences #Metabolomics #Systemsanalysis
https://www.newsbeep.com/au/760071/ -
The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
Study populationRotterdam Study The Rotterdam Study is a prospective population-based study from the Ommoord district of Rotterdam, The…
#NewsBeep #News #Healthcare #Ageing #Alzheimer'sDisease #AU #Australia #Dataintegration #general #Health #LifeSciences #Metabolomics #Systemsanalysis
https://www.newsbeep.com/au/760071/ -
https://www.europesays.com/ie/553999/ The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome #Ageing #Alzheimer'sDisease #DataIntegration #Éire #general #Health #HealthCare #Healthcare #IE #Ireland #LifeSciences #Metabolomics #SystemsAnalysis
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Tagging the Tank: Ubiquitin-mediated clearance of cellular energy reserves
You have full access to this article via your institution. The ubiquitin system is fundamental to the control…
#Energy #cell(biology) #general #Glycobiology #LifeSciences #Metabolomics
https://www.europesays.com/3070387/ -
New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
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New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
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New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
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New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
-
New co-authored manuscript on liver cancer multi-omics:
Integrated Multi-omic Analyses Reveal Novel Gene-Metabolite Relationships in Human Steatohepatitic Hepatocellular Carcinoma
Anspach et al., https://www.jlr.org/article/S0022-2275(26)00107-0/fulltext8 patients, *paired samples* of cancer and adjacent normal!! (made the statistics so nice to work with and look for correlations between rna-seq and metabolomics).
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Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.
Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦♂️
All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.
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Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.
Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦♂️
All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.
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Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.
Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦♂️
All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.
-
Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.
Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦♂️
All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.
-
Everytime I think that uploaded #metabolomics data can't get any weirder, I find something else.
Today, it's 1 sample out of 64 that has negative values. ONE out of 64 that has negative values. Unless something weird was done in processing, either all of them should contain negative values or none of them should. 🤦♂️
All missing for one sample, that sort of, might make sense. But 1 of 64 has negatives? WTF. And it's not just one value, it's 64 of 407.
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📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery
⏳ Submission Deadline: 31 December 2026
🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics
#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine
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📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery
⏳ Submission Deadline: 31 December 2026
🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics
#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine
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【🎉Latest accepted article】
Marine heatwaves intensify competition between toxigenic microalgae and cultured macroalgae#HarmfulAlgalBloom | #InterspecificCompetition | #MarineHeatwave | #Metabolomics | #SeaweedAquaculture | #Toxicity
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https://www.europesays.com/at/160265/ DGKL-Jahrestagung 2026: „Labor trifft KI“ – Anmeldung bis 18. Mai #AI #ARTIFICIALINTELLIGENCE #AT #Austria #Biobanking #Datenschutz #Dgkl #Diagnostics #FoundationModel #Gesundheit #Health #KI #Krebserkennung #KünstlicheIntelligenz #labor #Laborautomation #Lisdaten #MachineLearning #Metabolomics #Molecular #Nmr #Österreich #Pathology #Proteomics #Regulierung #Tutzing #workflow
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UC San Diego: From Molecules to Meaning: A Search Engine for the Chemistry of Life. “An international team led by researchers at University of California San Diego and University of California, Riverside has developed a free, web-based platform designed to make public metabolomics data more accessible.”
https://rbfirehose.com/2026/05/14/from-molecules-to-meaning-a-search-engine-for-the-chemistry-of-life-uc-san-diego/ -
UC San Diego: From Molecules to Meaning: A Search Engine for the Chemistry of Life. “An international team led by researchers at University of California San Diego and University of California, Riverside has developed a free, web-based platform designed to make public metabolomics data more accessible.”
https://rbfirehose.com/2026/05/14/from-molecules-to-meaning-a-search-engine-for-the-chemistry-of-life-uc-san-diego/ -
UC San Diego: From Molecules to Meaning: A Search Engine for the Chemistry of Life. “An international team led by researchers at University of California San Diego and University of California, Riverside has developed a free, web-based platform designed to make public metabolomics data more accessible.”
https://rbfirehose.com/2026/05/14/from-molecules-to-meaning-a-search-engine-for-the-chemistry-of-life-uc-san-diego/