#animalgeneticsandgenomics — Public Fediverse posts

Age distinguishes selection from causation in cancer genomes

Defining the carcinogenic effect of mutations We defined the carcinogenic effect of a mutation by its influence on…
#NewsBeep #News #Health #Agriculture #AnimalGeneticsandGenomics #Biomedicine #cancer #CancerResearch #GB #GeneFunction #general #Genetics #HumanGenetics #UK #UnitedKingdom
https://www.newsbeep.com/uk/570558/

Genetic association and machine learning improve the prediction of type 1 diabetes risk

Ethics statement The use of human genetic data in this study was approved by the University of California,…
#NewsBeep #News #Health #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #GB #GeneFunction #general #Geneticsresearch #Genome-wideassociationstudies #HumanGenetics #type1diabetes #UK #UnitedKingdom
https://www.newsbeep.com/uk/560489/

Telomere-to-telomere genome assemblies and population resequencing of diploid and allotetraploid peanut varieties

Assembly and annotation of six representative peanut genomes To determine the genome structure and genetic divers…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Science #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #GeneFunction #general #Genomeassemblyalgorithms #Genome-wideassociationstudies #HumanGenetics
https://www.newsbeep.com/us/607354/

Telomere-to-telomere genome assemblies and population resequencing of diploid and allotetraploid peanut varieties

Assembly and annotation of six representative peanut genomes To determine the genome structure and genetic divers…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Science #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #GeneFunction #general #Genomeassemblyalgorithms #Genome-wideassociationstudies #HumanGenetics
https://www.newsbeep.com/us/607354/

https://www.europesays.com/ie/452505/ Telomere-to-telomere genome assemblies and population resequencing of diploid and allotetraploid peanut varieties #Agriculture #AnimalGeneticsAndGenomics #Biomedicine #CancerResearch #Éire #GeneFunction #general #GenomeAssemblyAlgorithms #GenomeWideAssociationStudies #HumanGenetics #IE #Ireland #Science

https://www.europesays.com/uk/892487/ De novo formation of cis-regulatory contacts in the absence of NIPBL-driven chromatin loop extrusion #Agriculture #AnimalGeneticsAndGenomics #Biomedicine #CancerResearch #Epigenetics #GeneFunction #general #HumanGenetics #MolecularBiology #Science #UK #UnitedKingdom

An open science resource for accelerating scalable digital health research in autism and other neurodevelopmental conditions https://www.byteseu.com/1672786/ #AnimalGeneticsAndGenomics #AutismSpectrumDisorders #BehavioralSciences #BiologicalTechniques #Biomedicine #DiagnosticMarkers #General #neurobiology #Neurosciences #Psychology #Science #Sleep

https://www.europesays.com/ie/197384/ X chromosome inactivation across primary human tissues is mostly complete, with significant implications for genetic and clinical studies | BMC Genomics #AnimalGeneticsAndGenomics #ChromosomeX #DosageCompensation #Éire #Escape #GeneExpression #general #IE #Inactivation #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Proteomics #Science

The whole-genome map of Astragalus mongholicus provides ideas for the synthesis of glutathione and flavonoid | BMC Genomics

Fu J, Wang Z, Huang L, Zheng S, Wang D, Chen S, et al. Review of the botanical…
#NewsBeep #News #Science #AnimalGeneticsandGenomics #CA #Canada #Flavonoid #general #Genomesequences #Glutathione #LifeSciences #Microarrays #MicrobialGeneticsandGenomics #nAstragalusMembranaceusvar.Mongholicusn #PlantGeneticsandGenomics #Proteomics
https://www.newsbeep.com/ca/303296/

https://www.europesays.com/ie/193912/ Comparative genomics and transcriptomics of the Spiroplasma glossinidia strain sGff reveal insights into host interaction and trypanosome resistance in Glossina fuscipes fuscipes | BMC Genomics #AnimalGeneticsAndGenomics #Éire #general #GlossinaFuscipesFuscipes #IE #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Proteomics #Science #Spiroplasma #SpiroplasmaGlossinidia #Symbiosis #Tsetse

Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes

Iyer, L. M., Abhiman, S. & Aravind, L. Natural History of Eukaryotic DNA Methylation Systems, Vol. 101 (Elsevier,…
#NewsBeep #News #Science #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #epigenetics #Epigenomics #GB #GeneFunction #generegulation #general #HumanGenetics #UK #UnitedKingdom
https://www.newsbeep.com/uk/272070/

https://www.europesays.com/ie/186522/ Genomic evolution and stability of the mcr-1-harboring IncI2 plasmid in the presence and absence of colistin | BMC Genomics #AnimalGeneticsAndGenomics #BacterialFitness #ColistinResistance #Éire #ExperimentalEvolution #general #Health #IE #IncI2Plasmid #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #NMcr1n #PlantGeneticsAndGenomics #PlasmidConjugation #PlasmidStability #Proteomics

https://www.europesays.com/ie/185801/ Unexplored diversity and molecular genetic signatures of chimallin and phuz encoding phages | BMC Genomics #AnimalGeneticsAndGenomics #AntiDefenseSystem #Earth’sEcosystems #Éire #general #IE #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #NucleusFormingPhages #PlantGeneticsAndGenomics #ProteinNucleusShell #Proteomics #Science

https://www.europesays.com/ie/181788/ Genomic differentiation between wild and domesticated populations of large yellow croaker (Larimichthys crocea): environmental impacts | BMC Genomics #AnimalGeneticsAndGenomics #Aquaculture #Éire #EnvironmentalAssociationAnalysis #general #GeneticDifferentiation #IE #Ireland #LarimichthysCrocea #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #PopulationGenomics #Proteomics #Science #WholeGenomeResequencing

https://www.europesays.com/ie/181301/ Integrated transcriptomic and proteomic analysis reveals molecular mechanisms of melatonin-regulated hair follicle growth in cashmere goats and comparative insights across goat breeds | BMC Genomics #AnimalGeneticsAndGenomics #CashmereGoat #Éire #general #HairFollicleGrowthCycle #IE #Ireland #LifeSciences #melatonin #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Proteome #Proteomics #Science #SecondaryHairFollicle #SignalingPathway #Transcriptome

https://www.europesays.com/ie/176064/ Integrating transcriptome and metabolome reveals sex-dependent meat quality regulation in Qiandongnan Xiaoxiang chickens | BMC Genomics #AnimalGeneticsAndGenomics #Éire #general #Health #HistidineMetabolism #IE #Ireland #LifeSciences #MeatQuality #Metabolome #Microarrays #MicrobialGeneticsAndGenomics #NicotinateMetabolism #PlantGeneticsAndGenomics #Proteomics #QiandongnanXiaoxiangChicken #Transcriptome

https://www.europesays.com/ie/164225/ Reconstruction and application of a genome-scale metabolic model for Streptococcus suis | BMC Genomics #AnimalGeneticsAndGenomics #AntimicrobialTargets #Éire #general #Health #IE #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #NStreptococcusSuisn #PlantGeneticsAndGenomics #Proteomics #VirulenceFactor

https://www.europesays.com/ie/149631/ Prophage landscape in Enterococcus faecium: diversity, resistance genes, virulence factors, and endolysin profiling | BMC Genomics #AnimalGeneticsAndGenomics #AntimicrobialResistanceGenes #Éire #Endolysin #general #IE #Ireland #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #NEnterococcusFaeciumn #PlantGeneticsAndGenomics #Prophages #Proteomics #Science #VirulenceFactors

https://www.europesays.com/ie/140123/ ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #Éire #EvolutionaryBiology #HumanGenetics #IE #Ireland #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Science

Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs

Cohorts We used published data (GEO accession no. GSE162632) to study the effect of 12 h of ex vivo…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #AU #Australia #Biomedicine #CancerResearch #GeneFunction #generegulation #general #HumanGenetics #Science
https://www.newsbeep.com/au/228762/

https://www.europesays.com/uk/511467/ FT-like genes in Cannabis and hops: sex specific expression and copy-number variation may explain flowering time variation | BMC Genomics #adaptation #AnimalGeneticsAndGenomics #Cannabaceae #FloweringTime #general #Genetics #LifeSciences #microarrays #MicrobialGeneticsAndGenomics #NCannabisSativan #NHumulusLupulusn #PEBP #phylogenetics #PlantGeneticsAndGenomics #proteomics #RNASeq #Science #SubFunctionalisation #UK #UnitedKingdom

Redefining cellular reprogramming with advanced genomic technologies

Briggs, R. & King, T. J. Transplantation of living nuclei from blastula cells into enucleated Frogs’ eggs. Proc.…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #Development #Differentiation #GeneFunction #general #HumanGenetics #Regeneration #Reprogramming #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/209164/

SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to f…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #bioinformatics #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/204434/

SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology

Model residuals of linear regression and logistic regression Linear regression and logistic regression are regular models to fit…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #AU #Australia #bioinformatics #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science
https://www.newsbeep.com/au/217963/

https://www.europesays.com/uk/504364/ SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #EvolutionaryBiology #Genetics #HumanGenetics #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Science #UK #UnitedKingdom

https://www.europesays.com/uk/489216/ A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #EvolutionaryBiology #Genetics #HumanGenetics #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Science #UK #UnitedKingdom

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #AU #Australia #bioinformatics #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science
https://www.newsbeep.com/au/202998/

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #bioinformatics #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/190445/

A novel gene expression stability metric to unveil homeostasis and regulation | Genome Biology

K-proportion and gene homeostasis Z-Index identify regulatory genes As cells of the same type and in the same…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #bioinformatics #CA #Canada #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science
https://www.newsbeep.com/ca/202546/

https://www.europesays.com/uk/470886/ Incorporating additive genetic effects and linkage disequilibrium information to discover gene-environment interactions using BV-LDER-GE | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #EvolutionaryBiology #GeneEnvironmentInteraction #GeneticCovariance #Genetics #GenomeWideAssociationStudy #GenomeWideInteractionScan #HumanGenetics #LinkageDisequilibrium #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Science #StatisticalPower #UK #UnitedKingdom

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #AU #Australia #Enrichmentanalysis #Eucalypthybrid #general #Heterosis #LifeSciences #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #Science #WGCNA
https://www.newsbeep.com/au/187077/

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

Preparation of preliminary data In all samples, the proportion of clean reads was higher …
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Genetics #AnimalGeneticsandGenomics #Enrichmentanalysis #Eucalypthybrid #general #Heterosis #LifeSciences #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #Science #WGCNA
https://www.newsbeep.com/us/199059/

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

Preparation of preliminary data In all samples, the proportion of clean reads was higher …
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Genetics #AnimalGeneticsandGenomics #Enrichmentanalysis #Eucalypthybrid #general #Heterosis #LifeSciences #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #Science #WGCNA
https://www.newsbeep.com/us/199059/

https://www.europesays.com/uk/470550/ Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics #AnimalGeneticsAndGenomics #EnrichmentAnalysis #EucalyptHybrid #general #Genetics #Heterosis #LifeSciences #microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #proteomics #Science #UK #UnitedKingdom #WGCNA

Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis | BMC Genomics

Preparation of preliminary data In all samples, the proportion of clean reads was higher than 99.5% (Table S2),…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #Enrichmentanalysis #Eucalypthybrid #general #Heterosis #LifeSciences #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #proteomics #Science #UK #UnitedKingdom #WGCNA
https://www.newsbeep.com/uk/176969/

Mapping genes for resilient dairy cows by means of across-breed genome-wide association analysis | BMC Genomics

Data processing and evaluation as well as statistica…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Genetics #AnimalGeneticsandGenomics #Autocorrelation #Dairycattle #general #GWAS #LifeSciences #LinkageDisequilibrium #MDS #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #resilience #Science #Variance
https://www.newsbeep.com/us/193938/

Mapping genes for resilient dairy cows by means of across-breed genome-wide association analysis | BMC Genomics

Data processing and evaluation as well as statistica…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Genetics #AnimalGeneticsandGenomics #Autocorrelation #Dairycattle #general #GWAS #LifeSciences #LinkageDisequilibrium #MDS #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #resilience #Science #Variance
https://www.newsbeep.com/us/193938/

https://www.europesays.com/uk/447200/ Fueling chromosomal gene diversification and artificial evolution with CRISPR | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #crispr #evolution #EvolutionaryBiology #FunctionalGenomics #GeneDiversification #Genetics #HumanGenetics #MicrobialGeneticsAndGenomics #OrganismEngineering #PlantGeneticsAndGenomics #Science #UK #UnitedKingdom

Fueling chromosomal gene diversification and artificial evolution with CRISPR | Genome Biology

Wilson DS, Keefe AD. Random mutagenesis by PCR. Curr Protoc Mol Biol. 2001;51:8–3. Google Scholar  Reetz…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #bioinformatics #CA #Canada #crispr #Evolution #EvolutionaryBiology #Functionalgenomics #Genediversification #HumanGenetics #MicrobialGeneticsandGenomics #Organismengineering #PlantGeneticsandGenomics #Science
https://www.newsbeep.com/ca/164350/

Regulation of heterosis-associated gene expression complementation in maize hybrids | Genome Biology

Plant genetic resources The IBM-RIL syn. 4 population [19] represents a collection of highly diversified genotypes with respect…
#NewsBeep #News #Genetics #AnimalGeneticsandGenomics #bioinformatics #EvolutionaryBiology #HumanGenetics #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/153052/

Differential cold stress intensities drive unique morphological and transcriptomic changes in Zea mays root hairs | BMC Genomics

Kennett DJ, Prufer KM, Culleton BJ, George RJ, Robinson M, et al. Early isotopic evidence for maize …
#NewsBeep #News #Science #Abioticstress #AnimalGeneticsandGenomics #AU #Australia #Cold #general #LifeSciences #Maize #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #RNA-seq #Roothair #Transcriptome
https://www.newsbeep.com/au/160588/

Is enhancer-driven gene regulation all wrapped up?

Symmons, O. et al. The Shh topological domain facilitates the action of remote enhancers by reducing the effects…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #AU #Australia #Biomedicine #CancerResearch #GeneFunction #generegulation #general #HumanGenetics #Nuclearorganization #Science
https://www.newsbeep.com/au/149958/

Telomere attrition becomes an instrument for clonal selection in aging hematopoiesis and leukemogenesis

Ethical regulations This study was conducted under approved UKB application no. 56844. Clinical samples were obtained with informed…
#NewsBeep #News #Genetics #Ageing #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CA #Canada #CancerResearch #GeneFunction #general #Geneticsresearch #Haematologicalcancer #HumanGenetics #Science
https://www.newsbeep.com/ca/110441/

Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity

BRG1 binding exhibits a linear response to its dosage In mES cells, Brg1 encodes the major catalytic subunit…
#NewsBeep #News #US #USA #UnitedStates #UnitedStatesOfAmerica #Genetics #Agriculture #AnimalGeneticsandGenomics #Biomedicine #cancer #CancerResearch #epigenetics #Epigenomics #GeneFunction #Generegulation #general #HumanGenetics #Science #Stemcells
https://www.newsbeep.com/us/101697/

https://www.europesays.com/uk/334769/ Urbanization and genetic homogenization in the medieval Low Countries revealed through a ten-century paleogenomic study of the city of Sint-Truiden | Genome Biology #AnimalGeneticsAndGenomics #Bioinformatics #EvolutionaryBiology #Flanders #Genetics #HumanGenetics #LowCountries #Medieval #MicrobialGeneticsAndGenomics #Migration #PalaeoGenomics #Plague #PlantGeneticsAndGenomics #Science #UK #UnitedKingdom #Urbanization

Experimental evolution in an era of molecular manipulation

Monod, J. Chance and Necessity: an Essay on the Natural Philosophy of Modern Biology (Vintage Books, 1972). Blount,…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #Experimentalevolution #GeneFunction #general #HumanGenetics #Molecularevolution #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/14338/

Experimental evolution in an era of molecular manipulation

Monod, J. Chance and Necessity: an Essay on the Natural Philosophy of Modern Biology (Vintage Books, 1972). Blount,…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #AU #Australia #Biomedicine #CancerResearch #Experimentalevolution #GeneFunction #general #HumanGenetics #Molecularevolution #Science
https://www.newsbeep.com/au/11663/

Incorporating genetic data improves target trial emulations and informs the use of polygenic scores in randomized controlled trial design

Ethics statement This study complies with all relevant ethical regulations and was conducted in accordanc…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #Biomedicine #CancerResearch #Epidemiology #GeneFunction #general #Geneticsresearch #HumanGenetics #Randomizedcontrolledtrials #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/9054/

Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs

Identifying the structures of autism phenotypes To best reflect the complexity of presentations across autistic individuals, we identified…
#NewsBeep #News #Genetics #Agriculture #AnimalGeneticsandGenomics #Autismspectrumdisorders #Biomedicine #CancerResearch #GeneFunction #general #Geneticsresearch #HumanGenetics #Science #UK #UnitedKingdom
https://www.newsbeep.com/uk/8820/

https://www.europesays.com/uk/275359/ Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy #Ageing #Agriculture #AnimalGeneticsAndGenomics #Biomedicine #CancerResearch #GeneFunction #general #Genetics #HaematologicalCancer #HumanGenetics #Science #UK #UnitedKingdom