Efficient start of the ESG4Stars project with kick-off meeting, general assembly and first collaborative working days all in one week
https://galaxyproject.org/news/2026-10-12-esg4stars-kicked-off/
#usegalaxy — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #usegalaxy, aggregated by home.social.
-
-
📣 microGalaxy Hackathon for Tool Development
Join the microGalaxy community on October 14th to update outdated metagenomics tools in the IUC repository!
📍 Online
📅 14 October 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-10-14-microgalaxy-hackathon/ -
Are you at ASM-BIG? Stop by the Galaxy table during the poster sessions to chat about microbial workflows, ask questions, grab some CANDY, or just say hi!
-
📣 Workshop: Sustainable research computing with Galaxy: Workflows, infrastructure and practice
Two-day workshop in Madrid exploring how research workflows can be made more sustainable (19-20 November). Registration open now
📍
📅 19 November 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-10-08-esg4stars-madrid/ -
Circumvent context window limits of LLMs by splitting long texts into manageable chunks
https://galaxyproject.org/news/2026-10-02-langchain-text-splitters/ -
A Galaxy Imaging Training took place at the Boosting Biodata Bootcamp 2026 in Aachen
https://galaxyproject.org/news/2026-09-16-boosting-biodata-boot/ -
Highlights from a single-cell event in the UK and future opportunities to get involved with SPOC and BioFAIR.
https://galaxyproject.org/news/2026-09-24-biofair-cofest/ -
Browse CKAN datasets in Galaxy, analyse using tools and workflows, and export results to CKAN.
https://galaxyproject.org/news/2026-09-16-ckan-integration/ -
Across 160 bioinformatics tasks, agents using Galaxy achieved accuracy comparable to agents writing custom code.
https://galaxyproject.org/news/2026-09-21-ai-agents-benchmark/ -
RE: https://fedihum.org/@SchnDa/117365905495985261
#AI4Social is a great project, indeed 🚀
Making #UseGalaxy more and more useful in the Humanities and Social Sciences is the way to go - thanks @SchnDa ! -
Today was the kickoff of our new #EU project on #AI Readiness for Social Impact #ai4social
We from @galaxyfreiburg are excited to be part of this #EOSC project with more than 10 partners.
During the next years we will mostly contribute to developing an AI-ready infrastructure platform and particularly support the use case on AI in Historical Archives with #tools #workflows and trainings.Read more on the project here: https://galaxyproject.org/news/2026-10-01-ai4social/
-
Join the microGalaxy community on October 14th to update outdated metagenomics tools in the IUC repository!
https://galaxyproject.org/news/2026-09-22-microgalaxy-hackathon/ -
📣 Introduction to the Data Analysis Platform Galaxy (in German)
📍 Freiburg, Germany
📅 2 December 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-12-02-ub-cl/@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway -
📣 Introduction to the Data Analysis Platform Galaxy (in German)
📍 Freiburg, Germany
📅 2 December 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-12-02-ub-cl/@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #UniFreiburg -
The Image Analysis in Galaxy community is happy to share the first publication on bioimage data analysis, management and community practices in Galaxy
https://galaxyproject.org/news/2026-09-16-bioimagingpub-jm/ -
The Image Analysis in Galaxy community is happy to share the first publication on bioimage data analysis, management and community practices in Galaxy
https://galaxyproject.org/news/2026-09-16-bioimagingpub-jm/ -
TPV 3.3.0 hast been released!
https://github.com/galaxyproject/total-perspective-vortex/releases/tag/v3.3.0
-
At IUSSI 2026 in Freiburg, Mina Hojat Ansari presented how reproducible, multi-layer metagenomic analysis in Galaxy helps investigate termite gut microbiome recovery after molting.
https://galaxyproject.org/news/2026-09-08-galaxy-iussi/ -
At IUSSI 2026 in Freiburg, Mina Hojat Ansari presented how reproducible, multi-layer metagenomic analysis in Galaxy helps investigate termite gut microbiome recovery after molting.
https://galaxyproject.org/news/2026-09-08-galaxy-iussi/ -
Explore Galaxy 26.1 and Galaxy Labs, welcome UseGalaxy Canada, see how Galaxy Australia is simplifying data movement, discover Galaxy-powered wildlife ecology and public-health workflows, and find jobs, training, and events across the community.
https://galaxyproject.org/news/2026-09-08-q3-newsletter/ -
Explore Galaxy 26.1 and Galaxy Labs, welcome UseGalaxy Canada, see how Galaxy Australia is simplifying data movement, discover Galaxy-powered wildlife ecology and public-health workflows, and find jobs, training, and events across the community.
https://galaxyproject.org/news/2026-09-08-q3-newsletter/ -
Galaxy Training Academy 2026 brought together more than 2,200 registrations from 108 countries for a free, global week of self-paced Galaxy training across 11 tracks.
https://galaxyproject.org/news/2026-09-08-gta2026-recap/ -
Galaxy Training Academy 2026 brought together more than 2,200 registrations from 108 countries for a free, global week of self-paced Galaxy training across 11 tracks.
https://galaxyproject.org/news/2026-09-08-gta2026-recap/ -
Only a handful of spots remain for the 2nd Galaxy Tool Development Workshop in Freiburg (7-9 October 2026). Registration closes on 11 September, and remote participation is available.
https://galaxyproject.org/news/2026-09-09-tool-dev-workshop/ -
Only a handful of spots remain for the 2nd Galaxy Tool Development Workshop in Freiburg (7-9 October 2026). Registration closes on 11 September, and remote participation is available.
https://galaxyproject.org/news/2026-09-09-tool-dev-workshop/ -
Did you know ....
https://galaxyproject.org/did-you-know/
A new feature of the Galaxy Hub. Please add your new nuggets, you will get a new fact with every page load.
Extra feature, you can include the bare site now in your own website ...
https://galaxyproject.org/bare/did-you-know/ and every time the page is loaded you see a new Galaxy fact that you maybe didn't know before :)
-
Marking it's first anniversary, I took the time to upgrade our "Intro to #digitalHumanities" #tutorial that guides you through the #workflow system #usegalaxy for #humanities and #socialsciences.
free, open and online. Check it out here:
https://gxy.io/GTN:T00557 -
📣 IBSB 2026: Bioimage Analysis with Galaxy (Workshop + Symposium Talk)
Explore open-source bioimage analysis with Galaxy in this hands-on workshop and conference talk at IBSB 2026.
📍 Leibniz-HKI
📅 16 September 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-09-17-ibsb2026/@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway -
📣 IBSB 2026: Bioimage Analysis with Galaxy (Workshop + Symposium Talk)
Explore open-source bioimage analysis with Galaxy in this hands-on workshop and conference talk at IBSB 2026.
📍 Leibniz-HKI
📅 16 September 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-09-17-ibsb2026/@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway #UniFreiburg -
@cmboulanger
Really cool work!
For those interested in running Nuextract without a good laptop, it also works on the #openSource platform #usegalaxy here:
https://usegalaxy.eu/?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/llm_hub/llm_hub/2.53.0+galaxy0Create a free account, select image models and test Numarkdown.
You can also run other open source LLMs there - directly from your browser.
Happy research! -
1st in a 4-part BRC-Analytics series on Cyclospora outbreak analysis: what genomes, genotyping panels and sequencing data exist, and how an independent open implementation of the public 8-marker method is built and validated in Galaxy.
https://gxy.io/blog/Cyclospora1 -
📣 The 2nd Galaxy Tool Development Workshop - Now Open to the wider Community!
Join us in Freiburg to learn how to build, test, and publish your own tools for the Galaxy platform - hands-on, beginner-friendly, and led by experienced Galaxy developers
📍 Department of Computer Science, University of Freiburg
📅 7 October 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-10-07-tool-dev-workshop/@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway -
After ten years on a Jekyll-on-GitHub setup, galaxyproject.eu is now completely powered by the Galaxy Hub — a fast, metadata-driven home that any Galaxy community can reuse.
https://galaxyproject.org/news/2026-08-07-eu-website-on-galaxy-hub/ -
We are getting ready to announce a limited roll out of new functionality for https://UseGalaxy.org. If you are a Galaxy user, watch this space to be added to the list of users allowed in the initial wave. I expect the announcement in a day or two while we make sure all our ducks are lined up. #GalaxyProject #UseGalaxy #OpenComputing #OpenScience
-
Galaxy 26.1 introduces Galaxy Notebooks, context-aware GalaxyAI agents, Model Context Protocol support, bulk dataset storage migration, a modern workflow extraction interface, favorite and recent tools, and clearer workflow execution monitoring. Explore the user release notes.
https://docs.galaxyproject.org/en/master/releases/26.1_announce_user.html -
A look back at the 2026 Galaxy Community Conference in Clermont-Ferrand, France.
https://galaxyproject.org/news/2026-07-29-gcc-ifb-recap/ -
The latest Galaxy update in Nucleic Acids Research highlights major advances in the platform’s interface, workflows, data management, visualizations, infrastructure, and global community.
https://galaxyproject.org/news/2026-07-24-nar-2026/ -
A summary of the outcomes and highlights from the CoFest held after the 2026 Galaxy Community Conference in Clermont-Ferrand, France.
https://galaxyproject.org/news/2026-07-20-gcc2026-cofest-outcomes/ -
📣 microGalaxy / Microbiology Community Meeting
Join us on September 9th to explore how BioDIGs is collaboratively bridging soil microbiomes, the environment, and health and how we can collaborate!
📍 online
📅 9 September 2026
🔗 More info & registration: https://galaxyproject.org/events/2026-09-09-microgalaxy/ -
Powered by #usegalaxy 😊 Very proud that we could help!
-
At GCC2026, the Galaxy community came together to ask how AI can support scientific discovery while preserving the trust, transparency, reproducibility, and human-centered values that define Galaxy.
https://galaxyproject.org/news/2026-07-09-gcc2026-fishbowl-summary/ -
Machine learning at Galaxy Community Conference 2026, Clermont-Ferrand, France
https://galaxyproject.org/news/2026-07-01-gcc-ml-2026/ -
Machine learning at Galaxy Community Conference 2026, Clermont-Ferrand, France
https://galaxyproject.org/news/2026-07-01-gcc-ml-2026/ -
Galaxy is standardising a shared data table for pre-downloaded Hugging Face models so tool authors and admins can coordinate without duplicated effort.
https://galaxyproject.org/news/2026-04-13-huggingface-data-table/ -
📣 Profiling of microbial communities using targeted and shotgun metagenomics
This training course focuses on the study of the microbiota using Next Generation Sequencing (NGS) techniques
📍 Online
📅 29 June 2026
🔗 More info & registration: https://elixir-iib-training.github.io/site/2026-06-29-Profiling_microbial_communities@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #EuroScienceGateway -
Dr Gareth Price reflects on the Galaxy Labs Engine paper, recently published in GigaScience, and the GCC conversations and BioHackathons that grew it from an idea into a globally deployed tool.
https://galaxyproject.org/news/2026-05-14-galaxy-labs-engine-reflections/ -
My journey wrapping HAL, PAF, and TAF tools for the European Galaxy server.
https://galaxyproject.org/news/2026-05-19-from-pipettes-to-code/ -
Eight frontier LLMs, one RNA-seq dataset. We had them reproduce a published Candida auris analysis by using Orbit to drive Galaxy.
Six models independently replicated the original SCF1 downregulation finding—while their API costs varied 47× ($2.82–$131.83).
Read what we learned: https://galaxyproject.org/news/2026-06-09-llm-agents-reanalyze-rnaseq/
-
The Galaxy Training Academy, a #free asynchronous, self-paced online #learning event across various domains, starts next week.
We are excited to feature with a track on #Dh as well.
All material is based on #oer from the @gtn
Join us and learn more about #usegalaxy and how to analyse your scientific data!
https://training.galaxyproject.org/training-material/events/2026-05-18-galaxy-academy.html
Sign up until the end of the week!
-
🎧 Want to turn audio into text – but have zero coding skills and can’t install anything? No worries!
🚀 Dive into our step‑by‑step tutorial on using **#Whisper** for automated speech recognition. It’s easy, free, and runs right in Galaxy.
🔗 **Check it out:** https://gxy.io/GTN:T00577
💡 Powered by @galaxyfreiburg & @gtn
#usegalaxy #opensource #oralhistory #OER #DataScience #humanities
-
🌱 Join Scott Cain for a Plants Methods Exchange (PMEX) webinar on April 23, 1PM EDT introducing Bioinformatics in Galaxy and delving into how to get the most from it. Lots of good resources!
Register here: https://tinyurl.com/PMEXApril2026
-
Have you already checked out the IWC - the Intergalactic Workflow Commission that provides curated and tested #usegalaxy workflows to you?
119 scientific workflows! And the best is that you can start them from the IWC website at your favourite Galaxy server using free academic resources.
-
While I know most of the authors, I wasn't involved in writing "Ten common misconceptions about #Galaxy (and why they are wrong!)." They did a really good job on this, and I have to say, I agree with them!
#UseGalaxyhttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1013869
-
I am excited to present @galaxyfreiburg in a panel of #LoveDataweek with my colleagues from the Central Data Facility and the DH Lab next week:
What counts as “research data” in the humanities? How can we get and responsibly manage that data?
Join us for an interactive talk that answers these questions and introduces you to different institutions at the University of Freiburg to help you with your research data analysis.
https://cdf.uni-freiburg.de/en/events/2026-02-09-love-data-week.html
-
Are you analysing texts or data? Are you using #huggingface a lot?
Are you into #Opensource ?Then check out our new HuggingFace integration in Galaxy:
Browse the vast amounts of models and use them directly as an input for tools, etc.
We demonstrate this by explaining how to auto-crop text from images using DocLayout-YOLO for image pre-processing.Find out more here:
https://galaxyproject.org/news/2026-01-07-hf-integration/ -
🚀 Workshop: HTS Data Analysis with Galaxy
🗓️ March 9-13, 2026
📍 Freiburg, GermanyLearn Galaxy basics, ChIP-seq, RNA-seq, Variant Calling & Microbiome analyses!
⏰ Register by Feb 8 → https://forms.gle/1C2iHiEjmPJMiCaK6
📄 Info: https://gxy.io/GTN:E00039 -
Ich freue mich auf die #TKFDMCoffeeLecture mit @tkfdm
Um 14 Uhr geht es los. Nochmal schnell das Heißgetränk eurer Wahl vorbereiten, anmelden und dann um 14 Uhr hören, wie #usegalaxy euch beim Analysieren eurer Texte, Daten und Medien in einer #opensource Umgebung mit #FDM helfen kann.
-
#TKFDMCoffeeLectures ☕-wednesday at the doors again!
This Wednesday, @SchnDa from @galaxyfreiburg will give an intro on how @galaxyproject helps analyzing media, text or digital data in your research w/o programming or expensive programs.
She'll bring use cases from the Humanities and Social Sciences (while usegalaxy.eu itself is supposed to be domain agnostic).Please, be invited to join us on
26nov at 2pm 🗓️
Info & quick registration:
https://forschungsdaten-thueringen.de/veranstaltung/Galaxy.html
#UseGalaxy #GalaxyProject