#spatialomics — Public Fediverse posts

📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery

⏳ Submission Deadline: 31 December 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics

#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine

📢 Call for Papers: Computational Spatial Omics - Multimodal Strategies for Systems Biology and Biomedical Discovery

⏳ Submission Deadline: 31 December 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/computational-spatial-omics

#CallForPapers #SpatialOmics #SpatialTranscriptomics #SpatialProteomics #Metabolomics #Lipidomics #Multiomics #ComputationalBiology #SystemsBiology #Bioinformatics #AIinHealthcare #DigitalPathology #GraphNeuralNetworks #PrecisionMedicine

New tool for #SpatialOmics: With C-COMPASS, researchers can analyze the distribution of proteins and lipids in cells – no programming skills required. Developed by #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ai-based-software-maps-proteins-and-lipids-within-cells

New tool for #SpatialOmics: With C-COMPASS, researchers can analyze the distribution of proteins and lipids in cells – no programming skills required. Developed by #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ai-based-software-maps-proteins-and-lipids-within-cells

New tool for #SpatialOmics: With C-COMPASS, researchers can analyze the distribution of proteins and lipids in cells – no programming skills required. Developed by #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ai-based-software-maps-proteins-and-lipids-within-cells

New tool for #SpatialOmics: With C-COMPASS, researchers can analyze the distribution of proteins and lipids in cells – no programming skills required. Developed by #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ai-based-software-maps-proteins-and-lipids-within-cells

Neues Tool für #SpatialOmics: Mit C-COMPASS können Forschende die Verteilung von Proteinen und Lipiden in Zellen analysieren – ganz ohne Programmierkenntnisse. Entwickelt von #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ki-basierte-software-kartiert-proteine-und-lipide-in-zellen

Neues Tool für #SpatialOmics: Mit C-COMPASS können Forschende die Verteilung von Proteinen und Lipiden in Zellen analysieren – ganz ohne Programmierkenntnisse. Entwickelt von #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ki-basierte-software-kartiert-proteine-und-lipide-in-zellen

Neues Tool für #SpatialOmics: Mit C-COMPASS können Forschende die Verteilung von Proteinen und Lipiden in Zellen analysieren – ganz ohne Programmierkenntnisse. Entwickelt von #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ki-basierte-software-kartiert-proteine-und-lipide-in-zellen

Neues Tool für #SpatialOmics: Mit C-COMPASS können Forschende die Verteilung von Proteinen und Lipiden in Zellen analysieren – ganz ohne Programmierkenntnisse. Entwickelt von #HelmholtzMunich, #DZD & #UniBonn.
https://nachrichten.idw-online.de/2025/12/04/c-compass-ki-basierte-software-kartiert-proteine-und-lipide-in-zellen

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

Interesting publication comparing @10xgenomics.bsky.social Xenium versus @brukercorporation.bsky.social GeoMx #spatialomics #SpatialBiology

RE: https://bsky.app/profile/did:plc:mzm7vvbpjaqrhdzyk6ipu4rj/post/3lzvicmzeu22m

Want a sneak peek or to try it on your own data? Try EnrichMap https://enrichmap.readthedocs.io/en/latest/
#SpatialTranscriptomics #ComputationalBiology #EnrichMap #spatialomics

Want a sneak peek or to try it on your own data? Try EnrichMap https://enrichmap.readthedocs.io/en/latest/
#SpatialTranscriptomics #ComputationalBiology #EnrichMap #spatialomics

How merging several advanced techniques will enable Generative Digital Twins. #digitalTwins #generativeAI #spatialOmics #imaging https://www.csbj.org/article/S2001-0370%2824%2900319-2/fulltext

How merging several advanced techniques will enable Generative Digital Twins. #digitalTwins #generativeAI #spatialOmics #imaging https://www.csbj.org/article/S2001-0370%2824%2900319-2/fulltext

How merging several advanced techniques will enable Generative Digital Twins. #digitalTwins #generativeAI #spatialOmics #imaging https://www.csbj.org/article/S2001-0370%2824%2900319-2/fulltext

How merging several advanced techniques will enable Generative Digital Twins. #digitalTwins #generativeAI #spatialOmics #imaging https://www.csbj.org/article/S2001-0370%2824%2900319-2/fulltext

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=84784

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=84784

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=84784

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=84784

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=84784

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=83054

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=83054

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=83054

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=83054

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=83054

Latest addition to our #SpatialOmics Methods series tackles the challenge of integrating multiple spatially resolved transcriptomics datasets. That employs the expression of all measured genes and the spatial location of cells, to integrate multiple tissue sections.

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics https://doi.org/10.1093/gigascience/giae042

See the series here: https://academic.oup.com/gigascience/pages/spatial-omics-methods-and-applications

Latest addition to our #SpatialOmics Methods series tackles the challenge of integrating multiple spatially resolved transcriptomics datasets. That employs the expression of all measured genes and the spatial location of cells, to integrate multiple tissue sections.

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics https://doi.org/10.1093/gigascience/giae042

See the series here: https://academic.oup.com/gigascience/pages/spatial-omics-methods-and-applications

Latest addition to our #SpatialOmics Methods series tackles the challenge of integrating multiple spatially resolved transcriptomics datasets. That employs the expression of all measured genes and the spatial location of cells, to integrate multiple tissue sections.

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics https://doi.org/10.1093/gigascience/giae042

See the series here: https://academic.oup.com/gigascience/pages/spatial-omics-methods-and-applications

Latest addition to our #SpatialOmics Methods series tackles the challenge of integrating multiple spatially resolved transcriptomics datasets. That employs the expression of all measured genes and the spatial location of cells, to integrate multiple tissue sections.

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics https://doi.org/10.1093/gigascience/giae042

See the series here: https://academic.oup.com/gigascience/pages/spatial-omics-methods-and-applications

Latest addition to our #SpatialOmics Methods series tackles the challenge of integrating multiple spatially resolved transcriptomics datasets. That employs the expression of all measured genes and the spatial location of cells, to integrate multiple tissue sections.

spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics https://doi.org/10.1093/gigascience/giae042

See the series here: https://academic.oup.com/gigascience/pages/spatial-omics-methods-and-applications

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=78140

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=78140

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=78140

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=78140

Postdoc in dynamic causal gene network from single-cell & spatial multiomic

University of Massachusetts Chan Medical School

We seek #postdoc to decode dynamic #GeneRegulatoryNetwork from #SingleCell & #SpatialOmics with #CausalInference. Quantitative bg needed. Apply now!????

See the full job description on jobRxiv: https://...
https://jobrxiv.org/job/university-of-massachusetts-chan-medical-school-27778-postdoc-in-dynamic-causal-gene-network-from-single-cell-spatial-multiomic/?feed_id=78140

Our second parallel session is about to start at #SIBdays24: “#SingleCell Biology: #Biology Through the Lens of Single-Cell and #SpatialOmics Technologies” chaired by Aurélie Gabriel @fondationisrec et @markrobinsonca https://sibdays.sib.swiss/session-descriptions#Single-cell …

Our second parallel session is about to start at #SIBdays24: “#SingleCell Biology: #Biology Through the Lens of Single-Cell and #SpatialOmics Technologies” chaired by Aurélie Gabriel @fondationisrec et @markrobinsonca https://sibdays.sib.swiss/session-descriptions#Single-cell …

Our second parallel session is about to start at #SIBdays24: “#SingleCell Biology: #Biology Through the Lens of Single-Cell and #SpatialOmics Technologies” chaired by Aurélie Gabriel @fondationisrec et @markrobinsonca https://sibdays.sib.swiss/session-descriptions#Single-cell …