#transcriptome — Public Fediverse posts

New publication: #Pseudomonas volatiles shape the root #transcriptome and #microbiome to promote plant growth under drought. #plantgrowth #rhizobacteria #volatiles
https://doi.org/10.1111/nph.71203

New publication: #Pseudomonas volatiles shape the root #transcriptome and #microbiome to promote plant growth under drought. #plantgrowth #rhizobacteria #volatiles
https://doi.org/10.1111/nph.71203

New publication: #Pseudomonas volatiles shape the root #transcriptome and #microbiome to promote plant growth under drought. #plantgrowth #rhizobacteria #volatiles
https://doi.org/10.1111/nph.71203

New publication: #Pseudomonas volatiles shape the root #transcriptome and #microbiome to promote plant growth under drought. #plantgrowth #rhizobacteria #volatiles
https://doi.org/10.1111/nph.71203

MolluscaGenes: A Transcriptomic Database for the Mollusca - has already proved a useful resource for me: https://www.biorxiv.org/content/10.64898/2026.05.05.723003v1 #mollusc #transcriptome #Genomics

MolluscaGenes: A Transcriptomic Database for the Mollusca - has already proved a useful resource for me: https://www.biorxiv.org/content/10.64898/2026.05.05.723003v1 #mollusc #transcriptome #Genomics

MolluscaGenes: A Transcriptomic Database for the Mollusca - has already proved a useful resource for me: https://www.biorxiv.org/content/10.64898/2026.05.05.723003v1 #mollusc #transcriptome #Genomics

MolluscaGenes: A Transcriptomic Database for the Mollusca - has already proved a useful resource for me: https://www.biorxiv.org/content/10.64898/2026.05.05.723003v1 #mollusc #transcriptome #Genomics

MolluscaGenes: A Transcriptomic Database for the Mollusca - has already proved a useful resource for me: https://www.biorxiv.org/content/10.64898/2026.05.05.723003v1 #mollusc #transcriptome #Genomics

Astrocyte diversity across space and time | MIT News

When it comes to brain function, neurons get a lot of the glory. But healthy brains depend on…
#NewsBeep #News #Science #astrocytediversity #astrocytes #AU #Australia #EdwardBoyden #expansionmicroscopy #GuopingFeng #HockE.TanandK.LisaYangCenterforAutismResearchatMIT #MargaretSchroeder #MITMcgovernInstitute #Transcriptome #YangTanCollective
https://www.newsbeep.com/au/335798/

https://www.europesays.com/ie/181301/ Integrated transcriptomic and proteomic analysis reveals molecular mechanisms of melatonin-regulated hair follicle growth in cashmere goats and comparative insights across goat breeds | BMC Genomics #AnimalGeneticsAndGenomics #CashmereGoat #Éire #general #HairFollicleGrowthCycle #IE #Ireland #LifeSciences #melatonin #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #Proteome #Proteomics #Science #SecondaryHairFollicle #SignalingPathway #Transcriptome

https://www.europesays.com/ie/176064/ Integrating transcriptome and metabolome reveals sex-dependent meat quality regulation in Qiandongnan Xiaoxiang chickens | BMC Genomics #AnimalGeneticsAndGenomics #Éire #general #Health #HistidineMetabolism #IE #Ireland #LifeSciences #MeatQuality #Metabolome #Microarrays #MicrobialGeneticsAndGenomics #NicotinateMetabolism #PlantGeneticsAndGenomics #Proteomics #QiandongnanXiaoxiangChicken #Transcriptome

The liver #transcriptome is highly sensitive to metabolic cues. By characterizing nuclear protein #OGlcNAcylation in mouse #liver during the day, this study shows how shifts in a nutrient-sensitive #PTM may shape transcriptional regulation @PLOSBiology https://plos.io/3KuS7m1

The liver #transcriptome is highly sensitive to metabolic cues. By characterizing nuclear protein #OGlcNAcylation in mouse #liver during the day, this study shows how shifts in a nutrient-sensitive #PTM may shape transcriptional regulation @PLOSBiology https://plos.io/3KuS7m1

The liver #transcriptome is highly sensitive to metabolic cues. By characterizing nuclear protein #OGlcNAcylation in mouse #liver during the day, this study shows how shifts in a nutrient-sensitive #PTM may shape transcriptional regulation @PLOSBiology https://plos.io/3KuS7m1

The liver #transcriptome is highly sensitive to metabolic cues. By characterizing nuclear protein #OGlcNAcylation in mouse #liver during the day, this study shows how shifts in a nutrient-sensitive #PTM may shape transcriptional regulation @PLOSBiology https://plos.io/3KuS7m1

The liver #transcriptome is highly sensitive to metabolic cues. By characterizing nuclear protein #OGlcNAcylation in mouse #liver during the day, this study shows how shifts in a nutrient-sensitive #PTM may shape transcriptional regulation @PLOSBiology https://plos.io/3KuS7m1

Differential cold stress intensities drive unique morphological and transcriptomic changes in Zea mays root hairs | BMC Genomics

Kennett DJ, Prufer KM, Culleton BJ, George RJ, Robinson M, et al. Early isotopic evidence for maize …
#NewsBeep #News #Science #Abioticstress #AnimalGeneticsandGenomics #AU #Australia #Cold #general #LifeSciences #Maize #Microarrays #MicrobialGeneticsandGenomics #PlantGeneticsandGenomics #Proteomics #RNA-seq #Roothair #Transcriptome
https://www.newsbeep.com/au/160588/

Pipeline release! nf-core/denovotranscript v1.2.1 - nf-core/denovotranscript v1.2.1!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.1

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.1 - nf-core/denovotranscript v1.2.1!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.1

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.1 - nf-core/denovotranscript v1.2.1!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.1

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.1 - nf-core/denovotranscript v1.2.1!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.1

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.1 - nf-core/denovotranscript v1.2.1!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.1

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

The #spider #Tibellus #oblongus (#Philodromidae) has a #Holarcticdistribution and is common in Central Europe, thus not being protected. It prefers #sunexposed #habitats, whether dry or moist, and is a free #hunter that is very well #camouflaged due to its elongated #bodyshape. Y. Korolkova et al. (2023) examined the #venomgland #transcriptome and a venom proteome analysis.

© #StefanFWirth #Rosenthal #Berlin 2025

Ref
Y. Korolkova et al. (2023)
https://doi.org/10.1038/s41597-023-02703-0

Photos
© S.F. Wirth

The #spider #Tibellus #oblongus (#Philodromidae) has a #Holarcticdistribution and is common in Central Europe, thus not being protected. It prefers #sunexposed #habitats, whether dry or moist, and is a free #hunter that is very well #camouflaged due to its elongated #bodyshape. Y. Korolkova et al. (2023) examined the #venomgland #transcriptome and a venom proteome analysis.

© #StefanFWirth #Rosenthal #Berlin 2025

Ref
Y. Korolkova et al. (2023)
https://doi.org/10.1038/s41597-023-02703-0

Photos
© S.F. Wirth

The #spider #Tibellus #oblongus (#Philodromidae) has a #Holarcticdistribution and is common in Central Europe, thus not being protected. It prefers #sunexposed #habitats, whether dry or moist, and is a free #hunter that is very well #camouflaged due to its elongated #bodyshape. Y. Korolkova et al. (2023) examined the #venomgland #transcriptome and a venom proteome analysis.

© #StefanFWirth #Rosenthal #Berlin 2025

Ref
Y. Korolkova et al. (2023)
https://doi.org/10.1038/s41597-023-02703-0

Photos
© S.F. Wirth

The #spider #Tibellus #oblongus (#Philodromidae) has a #Holarcticdistribution and is common in Central Europe, thus not being protected. It prefers #sunexposed #habitats, whether dry or moist, and is a free #hunter that is very well #camouflaged due to its elongated #bodyshape. Y. Korolkova et al. (2023) examined the #venomgland #transcriptome and a venom proteome analysis.

© #StefanFWirth #Rosenthal #Berlin 2025

Ref
Y. Korolkova et al. (2023)
https://doi.org/10.1038/s41597-023-02703-0

Photos
© S.F. Wirth

The #spider #Tibellus #oblongus (#Philodromidae) has a #Holarcticdistribution and is common in Central Europe, thus not being protected. It prefers #sunexposed #habitats, whether dry or moist, and is a free #hunter that is very well #camouflaged due to its elongated #bodyshape. Y. Korolkova et al. (2023) examined the #venomgland #transcriptome and a venom proteome analysis.

© #StefanFWirth #Rosenthal #Berlin 2025

Ref
Y. Korolkova et al. (2023)
https://doi.org/10.1038/s41597-023-02703-0

Photos
© S.F. Wirth

#Microbiota transplantation offers new hope against #cotton #leaf_curl #disease.

#CLCuD #rhizosphere #phylosphere #Gossypium # #microbiome #transcriptome

https://phys.org/news/2025-03-microbiota-transplantation-cotton-leaf-disease.html

#Microbiota transplantation offers new hope against #cotton #leaf_curl #disease.

#CLCuD #rhizosphere #phylosphere #Gossypium # #microbiome #transcriptome

https://phys.org/news/2025-03-microbiota-transplantation-cotton-leaf-disease.html

#Microbiota transplantation offers new hope against #cotton #leaf_curl #disease.

#CLCuD #rhizosphere #phylosphere #Gossypium # #microbiome #transcriptome

https://phys.org/news/2025-03-microbiota-transplantation-cotton-leaf-disease.html

#Microbiota transplantation offers new hope against #cotton #leaf_curl #disease.

#CLCuD #rhizosphere #phylosphere #Gossypium # #microbiome #transcriptome

https://phys.org/news/2025-03-microbiota-transplantation-cotton-leaf-disease.html

#Microbiota transplantation offers new hope against #cotton #leaf_curl #disease.

#CLCuD #rhizosphere #phylosphere #Gossypium # #microbiome #transcriptome

https://phys.org/news/2025-03-microbiota-transplantation-cotton-leaf-disease.html

Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.0

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.0

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.0

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.0

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/denovotranscript v1.2.0 - nf-core/denovotranscript v1.2.0!

Please see the changelog: https://github.com/nf-core/denovotranscript/releases/tag/1.2.0

#denovoassembly #rnaseq #transcriptome #nfcore #openscience #nextflow #bioinformatics

Random question for #transcriptome #bioinformatics folks - is there ever a reason to screen transcriptome assemblies (lots of small contigs) against database using ANI tools (i.e. skani)?

Curious to know if there's a usage case for it.

Random question for #transcriptome #bioinformatics folks - is there ever a reason to screen transcriptome assemblies (lots of small contigs) against database using ANI tools (i.e. skani)?

Curious to know if there's a usage case for it.

Random question for #transcriptome #bioinformatics folks - is there ever a reason to screen transcriptome assemblies (lots of small contigs) against database using ANI tools (i.e. skani)?

Curious to know if there's a usage case for it.

Random question for #transcriptome #bioinformatics folks - is there ever a reason to screen transcriptome assemblies (lots of small contigs) against database using ANI tools (i.e. skani)?

Curious to know if there's a usage case for it.

Random question for #transcriptome #bioinformatics folks - is there ever a reason to screen transcriptome assemblies (lots of small contigs) against database using ANI tools (i.e. skani)?

Curious to know if there's a usage case for it.

Do or die: How #soybeans tackle #nematode invaders.

#agriculture #transcriptome #RNA

https://phys.org/news/2025-01-die-soybeans-tackle-nematode-invaders.html

Do or die: How #soybeans tackle #nematode invaders.

#agriculture #transcriptome #RNA

https://phys.org/news/2025-01-die-soybeans-tackle-nematode-invaders.html

Do or die: How #soybeans tackle #nematode invaders.

#agriculture #transcriptome #RNA

https://phys.org/news/2025-01-die-soybeans-tackle-nematode-invaders.html

Do or die: How #soybeans tackle #nematode invaders.

#agriculture #transcriptome #RNA

https://phys.org/news/2025-01-die-soybeans-tackle-nematode-invaders.html

Do or die: How #soybeans tackle #nematode invaders.

#agriculture #transcriptome #RNA

https://phys.org/news/2025-01-die-soybeans-tackle-nematode-invaders.html

I've been seeing a few #transcriptome wide association studies (TWAS) papers lately. This is another example, from #sorghum, combining GWAS and TWAS to study flowering time. Bonus - I imagine that there's a lot more value that can be gained from the 822 #RNAseq samples made publicly available

https://www.biorxiv.org/content/10.1101/2024.12.12.628249v1.full.pdf

#PlantScience #PlantDevelopment #Sorghum

I've been seeing a few #transcriptome wide association studies (TWAS) papers lately. This is another example, from #sorghum, combining GWAS and TWAS to study flowering time. Bonus - I imagine that there's a lot more value that can be gained from the 822 #RNAseq samples made publicly available

https://www.biorxiv.org/content/10.1101/2024.12.12.628249v1.full.pdf

#PlantScience #PlantDevelopment #Sorghum