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353 results for “wikipathways”
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April 2026 WikiPathways update: 71 edits by 7 contributorsin and 2 new pathways the last month. More news at https://github.com/wikipathways/wikipathways-help/discussions/231 Accessible via #webservices, #rstats, #pathvisio and #cytoscape. https://www.wikipathways.org/index.php/Download_Pathways
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@wikipathways more on Vodorezova's FDPcrawleR can be found here: https://github.com/vodor001/FDPcrawleR
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March 2026 WikiPathways update: 45 edits by 5 contributors in the last month. More news at https://github.com/wikipathways/wikipathways-help/discussions/227
Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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Important: WikiPathways Technical Transition - Action Required for Some Users
Dear WikiPathways Community,
Effective April 1st, 2026, we will begin taking major steps toward retiring the classic WikiPathways backend as we complete our migration to our GitHub-based infrastructure.
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new blog post: "Where do the WikiPathways come from?" https://chem-bla-ics.linkedchemistry.info/2026/02/22/where-do-the-wikipathways-come-from.html https://doi.org/10.59350/6smn2-ah530
"We can see who the 8 people are who contributed to this pathway [..], and many authors are member of the @wikipathways review team who focus more on technical quality and the biology. The first author, however, often is the person who contributed most of the biological knowledge in the pathway"
Replies to this post show up in the blog.
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WikiPathways RDF IRIs are now dereferenceable! Every http://rdf.wikipathways.org/ identifier now resolves via HTTP with content negotiation: HTML for browsers, Turtle/JSON-LD/RDF-XML/N-Triples for machines.
Try it: click any IRI on the about page, or curl one with an Accept header.
https://rdf.wikipathways.org/about
https://github.com/wikipathways/wikipathways-iri-resolver#LinkedData #FAIR #WikiPathways #RDF #Bioinformatics #SemanticWeb
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February 2026 WikiPathways update: 95 edits by 9 contributorsin the last month. More news at https://github.com/wikipathways/wikipathways-help/discussions/221 Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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hi, if you are using the #WikiPathways (@wikipathways) RDF, please send me a ping. In the coming months, changes are going to happen. To fix and improve some old designs, to add new functionality (like in the January release with more direct IRI links to other knowledge graphs).
Some things may break. And I want to know your use case. I like to get a shortlist of people who I want to give a heads-up and possible even consult on changes in the design and shapes
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January 2026 WikiPathways update: 134 edits by 3 contributorsin the last month. More news at https://github.com/wikipathways/wikipathways-help/discussions/213 Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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"QPX: Pathway analysis environment" https://doi.org/10.37044/osf.io/m37f2_v1
"Building on our work at DBCLS BioHackathon 2023 (BH23), where we introduced QPX and promoted pathway modeling with WikiPathways (Pico et al., 2008) using PathVisio (Kutmon etal., 2015), we now focused on creating new pathway diagrams for diverse species and registering them in WikiPathways with functional annotations. In parallel, we deployed WikiPathways node data into Elasticsearch to enable fast and flexible search and integration of pathway information." https://osf.io/m37f2_v1
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December 2025 WikiPathways release: 840 edits by 8 contributors and 9 new pathways (4 in screenshots). Accessible via #webservices, #rstats, #pathvisio and #cytoscape.
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@wikipathways still has a good number (200 to 250) pathways that do not have a single reference (which does not mean no references were used): https://www.wikipathways.org/wikipathways-collection/index2#at-least-one-reference
I think we need some gamification here... a few tools that take the GPML or RDF and suggest a relevant lit reference, which then gets posted to this issue tracker (https://github.com/wikipathways/pathway-curation-tasks/issues), listing the WPID and PMID, PMCID, or DOI, and ideally the graphID of the DataNode or Interaction
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Hi everyone, we have updated the author and community pages on our website. Authors can now find curation reports for pathways they started, and Communities can find those too. We hope you like it! https://github.com/wikipathways/wikipathways-help/discussions/203
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November 2025 WikiPathways update: 686 edits by 6 contributors and 10 new pathways in the last month. Accessible via #webservices, #rstats, #pathvisio and #cytoscape.
Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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October 2025 WikiPathways update: 129 edits by 10 contributors and 5 new pathways in the last month. Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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September 2025 WikiPathways update: 261 edits by 6 contributors and 13 new pathways in the last month. Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen. https://www.wikipathways.org/index.php/Download_Pathways
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June 2025 WikiPathways release: 338 edits by 15 contributors and 9 new pathways. https://data.wikipathways.org/
Accessible via #webservices, #rstats, Pathvisio, and Cytoscape.
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May 2025 WikiPathways release: 491 edits by 9 contributors and 8 new pathways.
Accessible via #webservices, #rstats, Pathvisio, and Cytoscape.
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May 2023 WikiPathways release: 316 edits by 13 contributors and 15 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://www.wikipathways.org/download.html
#bioinformatics #openscience #opensource #nomoa -
April 2023 WikiPathways release: 276 edits by 32 contributors and 6 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://www.wikipathways.org/download.html
#bioinformatics #openscience #opensource #nomoa -
October 2024 WikiPathways update: 167 edits by 4 contributors and 2 new pathways in the last month. Accessible via #webservices, #rstats, #pathvisio and #Cytoscape Supported by #AWSOpen
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September 2024 WikiPathways update: 179 edits by 6 contributors and 4 new pathways in the last month. Accessible via #webservices, #rstats, #pathvisio and #cytoscape. Supported by #awsopen . https://wikipathways.org/index.php/Download_Pathways
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March 2024 WikiPathways release: 542 edits by 9 contributors and 10 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by AWSOpen. https://wikipathways.org/#download #bioinformatics #openscience #opensource
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July 2023 WikiPathways release: 232 edits by 32 contributors and 12 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape Supported by AWSOpen. https://wikipathways.org/#download #bioinformatics #openscience #opensource
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June 2023 WikiPathways release: 137 edits by 22 contributors and 2 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape Supported by AWSOpen. https://wikipathways.org/#download
#bioinformatics #openscience #opensource -
March 2023 WikiPathways release: 293 edits by 30 contributors and 22 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://www.wikipathways.org/download.html
#bioinformatics #openscience #opensource #nomoa -
February 2023 WikiPathways release: 283 edits by 32 contributors. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://wikipathways.org/index.php/Download_Pathways
#bioinformatics #openscience #opensource #nomoa -
January 2023 WikiPathways release: 151 edits by 13 contributors and 11 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://wikipathways.org/index.php/Download_Pathways
#bioinformatics #openscience #opensource #nomoa -
December 2022 WikiPathways release: 180 edits by 15 contributors and 1 new pathway. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://wikipathways.org/index.php/Download_Pathways
#bioinformatics #openscience #opensource #nomoa -
November 2022 WikiPathways release: 201 edits by 22 contributors and 8 new pathways. Accessible via #webservices and in #PathVisio, #Cytoscape. Supported by #AWSOpen. https://wikipathways.org/index.php/Download_Pathways
#bioinformatics #openscience #opensource #nomoa