#populationgenomics — Public Fediverse posts

The next step in a great scientific adventure led by Marina Brasó Vives on amphioxus evolution: population genomics of a species with 3% heterozygosity! Read the thread and the preprint 😁 #amphioxus #EvoDevo #PopulationGenomics #MolecularEvolution
https://bsky.app/profile/mbrasovives.bsky.social/post/3mctuhgks7k2q

https://www.europesays.com/ie/181788/ Genomic differentiation between wild and domesticated populations of large yellow croaker (Larimichthys crocea): environmental impacts | BMC Genomics #AnimalGeneticsAndGenomics #Aquaculture #Éire #EnvironmentalAssociationAnalysis #general #GeneticDifferentiation #IE #Ireland #LarimichthysCrocea #LifeSciences #Microarrays #MicrobialGeneticsAndGenomics #PlantGeneticsAndGenomics #PopulationGenomics #Proteomics #Science #WholeGenomeResequencing

#GWAS #PopulationGenomics #BIAS #PRS academic.oup.com/gigascience/...

EraSOR: a software tool to eli...

#GWAS #PopulationGenomics #BIAS #PRS https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad043/7199403

You can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc

Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25

(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)

Really had to read this article for my current project:

Raynaud et al. 2023 “Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study”

https://peercommunityjournal.org/articles/10.24072/pcjournal.254/

#SciArticleScreening #PopulationGenetics #PopulationGenomics #PCI

Interesting opportunity!
A permanent position as an Associate Professor in #Zoology is available
at the #NaturalHistoryMuseum #University of Oslo. #MuseumJobs #EvolutionaryBiology, #comparativegenomics #Transcriptomics #Systematics #populationgenomics

https://www.jobbnorge.no/en/available-jobs/job/268410/associate-professor-in-zoology

deadline February 23rd 2025

So I wrote a quick step-by-step procedure to apply False-Discovery rate correction on HWE tests, starting from a VCF:

https://www.normalesup.org/~glouvel/blog/false-discovery-rate-correction-for-hardy-weinberg-tests-on-a-vcf/

#PopulationGenomics #Bioinformatics

#PopulationGenomics #Biostatistics

I innocently asked why we apply this specific Hardy-Weinberg p-value cutoff as a prefilter step on a whole genome sequencing dataset (prior to population analyses), and now after reading several papers I am still totally unsure of the recommended procedure... I guess I should simply choose a very (very) low cutoff to minimize the number of false positives and just move on.

What's your method?

Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA

Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA

Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA

Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA

Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA

🔬 Dive into the fascinating world of #PopulationGenomics using #aDNA! Join our course to discover the secrets of ancient DNA analysis, focusing on eukaryote genomes. Learn from these experts and get hands-on experience. Don't miss out: https://www.physalia-courses.org/courses-workshops/adna-popgen/

Ariano, B., Mattiangeli, V., Breslin, E. M., Parkinson, E. W., McLaughlin, R., Thompson, J. E., Power, R. K., Stock, J. T., Mercieca-Spiteri, B., Stoddart, S., Malone, C., Gopalakrishnan, S., Cassidy, L. M., & Bradley, D. G. (2022). Ancient Maltese genomes and the genetic geography of Neolithic Europe. Current Biology, 32(12), 2668-2680.e6. https://doi.org/10.1016/j.cub.2022.04.069 #OpenAccess #OA #Journal #Article #Science #Biology #AncientDNA #Ancient #DNA #PopulationGenomics #Europe #Population #Genomics #Archaeology #Archaeodons #Neolithic #European #Migration #Academia #Academic #Academics @science @archaeodons

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

📢 Interested in #PopulationGenomics using #aDNA? Have a look at our course in January: https://physalia-courses.org/courses-workshops/adna-popgen/

#Genomics #aDNA #Bioinformatics #rstats

👏🥂🥳 Successful MSc defence by Michael Mitschke @Mol_Ecol
@uniinnsbruck
on #Daphniaturnover and #hybridisation due to trophic shifts.

Congrats to you, MSc. Michael, and thanks to examiners @birgit_sattler
and Barbara Tartarotti-Alfreider!

@moestmar
#PopulationGenomics #lakes

Our Conservation Genomics course is almost full. Last 6 seats left, so act fast! 🧬

🗓️24th-27th July

💡This course will introduce attendees to how the tools of population #genomics can be used to inform conservation!

🔗https://www.physalia-courses.org/courses-workshops/course62/

#ConservationGenomics #Genomics #Bioinformatics #Rstats #PopulationGenomics

🥁Discover the wonders of #PopulationGenomics with our course on low-coverage whole-genome sequencing data!

🧐Learn the best #Bioinformatics practices & methods using #ANGSD and associated programs to optimize your genomic data.

🗓️Register now: https://www.physalia-courses.org/courses-workshops/course64/

🥁Registration is open for the course "Model-based demographic inference from population genomics"

🔗https://physalia-courses.org/courses-workshops/demoinference/

#Genomics #PopulationGenomics #DemographicInference #Bioinformatics

There are the last 2 seats available for the course "Deep Learning methods in population genomics and phylogeography" with Manolo Perez & @MatteoFumagalli

#PopulationGenomics #DeepLearning #MachineLearning #Python #Genomics #Bioinformatics

https://www.physalia-courses.org/courses-workshops/deep-learning-in-popgen/

If you want to learn how to apply deep learning methods in #PopulationGenomics and #Phylogeography, you can't miss this course in February!
https://physalia-courses.org/courses-workshops/deep-learning-in-popgen/

#MachineLearning #Genomics #Bioinformatics #DeepLearning #Python

A great way to kickstart my #Mastodon migration from #twitter With a Preprint 🚨
Led by @Georgette_F from her bachelor 🤯 thesis at @lcgunam. She generated 130+ years old and modern whole-genomes of the (previously) endangered Seychelles paradise flycatcher. We used #PopulationGenomics , demographic reconstructions and fwd simulations to study their genetic load and adaptive potential over time. We ask how this species avoided #extinction and recovered. Brief 🧵 1/7 https://www.biorxiv.org/content/10.1101/2022.12.20.521169v1

Registration is now open for the upcoming EMBO Practical Course
"Population Genomics: background and tools" to be held in Procida, Italy,
13-19 March 2023

https://meetings.embo.org/event/23-pop-genomics

#populationgenetics #populationgenomics #embo

A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.

Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).

#Genomics #genomic #PopulationGenomics #bioinformatic #compBio

:boost_ok: :boost_requested: :mastoread:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

Anyone out there in #PopGen #Populationgenomics #RNAseq or #Molecular biology have any leads on where to buy duplex-specific nuclease? Main provider is a Russian and unavailable to most because of sanctions. I have not been an alternative supplier or enzyme. Please boost!

#introduction I deleted my Twitter Account! Associate Professor at Northeastern University with expertise in the population and evolutionary #genomics of #marine systems. Enjoy #rstats and #datavis. PI of the Evolving Seas RCN. Avid mountain biker, amateur ceramicist, #antiracist, and data organization snob. #SSEfolks #followforpopgenback #populationgenomics #evolution #blacklivesmatter #esebfolks #asnfolks #genetics #machinelearning #evolvingseas #pottery #ceramics #mountainbiking #MathBio

#introduction I deleted my Twitter Account! Associate Professor at Northeastern University with expertise in the population and evolutionary #genomics of #marine systems. Enjoy #rstats and #datavis. PI of the Evolving Seas RCN. Avid mountain biker, amateur ceramicist, #antiracist, and data organization snob. #SSEfolks #followforpopgenback #populationgenomics #evolution #blacklivesmatter #esebfolks #asnfolks #genetics #machinelearning #evolvingseas #pottery #ceramics #mountainbiking #MathBio

#introduction I deleted my Twitter Account! Associate Professor at Northeastern University with expertise in the population and evolutionary #genomics of #marine systems. Enjoy #rstats and #datavis. PI of the Evolving Seas RCN. Avid mountain biker, amateur ceramicist, #antiracist, and data organization snob. #SSEfolks #followforpopgenback #populationgenomics #evolution #blacklivesmatter #esebfolks #asnfolks #genetics #machinelearning #evolvingseas #pottery #ceramics #mountainbiking #MathBio

@mrtnj How about #ConservationGenomics or #AnimalGenomics or #PopulationGenomics ?

I am also interested in #Anopheles #mosquitoes that transmit #Plasmodium parasites which cause #malaria. I study #PopulationGenomics of these #vectors to find #CrypticSpecies and signals of #NaturalSelection which sometimes turns out to be not so natural (e.g. caused by #insecticides). Understanding patterns of #GeneticDiversity in these insects can help us better control them.
🦟

I see too many #insect pictures here so here are my unsolicited #mammal pict.

Introducing #endemic #island ungulates from Southeast Asia, #anoa and #babirusa. They are so elusive and rare that you can only got pictures like thia from the captivity.

I have been working on their #PopulationGenomics using opportunistic sampling from skulls and hairs owned by the locals across the Wallacea, which is really fun considering they live scattered across the island.

Another #introduction for another timezone:

Hi everyone! I work a lot with #PopulationGenomics. A bit like #populationgenetics but with extra fun of #Genomics and all its #statistical perks and #genetics itself.

Starting from #conservationbiology, I was wondering if there were any #EvolutionaryApplications that can help #conservation long-lasting question: how to keep #biodiversity?

I think population genetics is one way to go.