#populationgenomics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #populationgenomics, aggregated by home.social.
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New preprints! 3/3
OK this one is an update, but we have new evidence for near-panmixia between Mediterranean and Atlantic populations of amphioxus. Led by Marina Brasó-Vives
#Amphioxus #MolecularEvolution #PopulationGenomics
https://doi.org/10.64898/2026.01.13.699254 -
The next step in a great scientific adventure led by Marina Brasó Vives on amphioxus evolution: population genomics of a species with 3% heterozygosity! Read the thread and the preprint 😁 #amphioxus #EvoDevo #PopulationGenomics #MolecularEvolution
https://bsky.app/profile/mbrasovives.bsky.social/post/3mctuhgks7k2q -
You can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc -
Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm!
https://tinyurl.com/3aewk286
#EvoDevo #MolecularEvolution #bioinformatics #PopulationGenomics #RNAseq #PostDoc -
Excited to read this, I've been worried about the recurrence of these peaks in #PSMC graphs for years. Also, just on time before we submit one (a first for me). #PopulationGenetics #PopulationGenomics #MethodsMatter
https://bsky.app/profile/leonhilgers.bsky.social/post/3lhl5ti3nec25(If Mastodon doesn't show the Bluesky post: "Avoidable false PSMC population size peaks occur across numerous studies" https://doi.org/10.1016/j.cub.2024.09.028)
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Really had to read this article for my current project:
Raynaud et al. 2023 “Performance and limitations of linkage-disequilibrium-based methods for inferring the genomic landscape of recombination and detecting hotspots: a simulation study”
https://peercommunityjournal.org/articles/10.24072/pcjournal.254/
#SciArticleScreening #PopulationGenetics #PopulationGenomics #PCI
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Interesting opportunity!
A permanent position as an Associate Professor in #Zoology is available
at the #NaturalHistoryMuseum #University of Oslo. #MuseumJobs #EvolutionaryBiology, #comparativegenomics #Transcriptomics #Systematics #populationgenomicshttps://www.jobbnorge.no/en/available-jobs/job/268410/associate-professor-in-zoology
deadline February 23rd 2025
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So I wrote a quick step-by-step procedure to apply False-Discovery rate correction on HWE tests, starting from a VCF:
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#PopulationGenomics #Biostatistics
I innocently asked why we apply this specific Hardy-Weinberg p-value cutoff as a prefilter step on a whole genome sequencing dataset (prior to population analyses), and now after reading several papers I am still totally unsure of the recommended procedure... I guess I should simply choose a very (very) low cutoff to minimize the number of false positives and just move on.
What's your method?
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Hi people, just a personal update: I'm starting a new job as bioinformatician about the population genomics of horses, donkeys and relatives, involving ancient DNA.
Looking forward to sharing some experience with you!
#PopulationGenomics #PopGenomics #aDNA #ancientDNA -
🔬 Dive into the fascinating world of #PopulationGenomics using #aDNA! Join our course to discover the secrets of ancient DNA analysis, focusing on eukaryote genomes. Learn from these experts and get hands-on experience. Don't miss out: https://www.physalia-courses.org/courses-workshops/adna-popgen/
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Ariano, B., Mattiangeli, V., Breslin, E. M., Parkinson, E. W., McLaughlin, R., Thompson, J. E., Power, R. K., Stock, J. T., Mercieca-Spiteri, B., Stoddart, S., Malone, C., Gopalakrishnan, S., Cassidy, L. M., & Bradley, D. G. (2022). Ancient Maltese genomes and the genetic geography of Neolithic Europe. Current Biology, 32(12), 2668-2680.e6. https://doi.org/10.1016/j.cub.2022.04.069 #OpenAccess #OA #Journal #Article #Science #Biology #AncientDNA #Ancient #DNA #PopulationGenomics #Europe #Population #Genomics #Archaeology #Archaeodons #Neolithic #European #Migration #Academia #Academic #Academics @science @archaeodons
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A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication -
📢 Interested in #PopulationGenomics using #aDNA? Have a look at our course in January: https://physalia-courses.org/courses-workshops/adna-popgen/
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👏🥂🥳 Successful MSc defence by Michael Mitschke @Mol_Ecol
@uniinnsbruck
on #Daphniaturnover and #hybridisation due to trophic shifts.Congrats to you, MSc. Michael, and thanks to examiners @birgit_sattler
and Barbara Tartarotti-Alfreider!@moestmar
#PopulationGenomics #lakes -
Our Conservation Genomics course is almost full. Last 6 seats left, so act fast! 🧬
🗓️24th-27th July
💡This course will introduce attendees to how the tools of population #genomics can be used to inform conservation!
🔗https://www.physalia-courses.org/courses-workshops/course62/
#ConservationGenomics #Genomics #Bioinformatics #Rstats #PopulationGenomics
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🥁Discover the wonders of #PopulationGenomics with our course on low-coverage whole-genome sequencing data!
🧐Learn the best #Bioinformatics practices & methods using #ANGSD and associated programs to optimize your genomic data.
🗓️Register now: https://www.physalia-courses.org/courses-workshops/course64/
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🥁Registration is open for the course "Model-based demographic inference from population genomics"
🔗https://physalia-courses.org/courses-workshops/demoinference/
#Genomics #PopulationGenomics #DemographicInference #Bioinformatics
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There are the last 2 seats available for the course "Deep Learning methods in population genomics and phylogeography" with Manolo Perez & @MatteoFumagalli
#PopulationGenomics #DeepLearning #MachineLearning #Python #Genomics #Bioinformatics
https://www.physalia-courses.org/courses-workshops/deep-learning-in-popgen/
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If you want to learn how to apply deep learning methods in #PopulationGenomics and #Phylogeography, you can't miss this course in February!
https://physalia-courses.org/courses-workshops/deep-learning-in-popgen/#MachineLearning #Genomics #Bioinformatics #DeepLearning #Python
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A great way to kickstart my #Mastodon migration from #twitter With a Preprint 🚨
Led by @Georgette_F from her bachelor 🤯 thesis at @lcgunam. She generated 130+ years old and modern whole-genomes of the (previously) endangered Seychelles paradise flycatcher. We used #PopulationGenomics , demographic reconstructions and fwd simulations to study their genetic load and adaptive potential over time. We ask how this species avoided #extinction and recovered. Brief 🧵 1/7 https://www.biorxiv.org/content/10.1101/2022.12.20.521169v1 -
Registration is now open for the upcoming EMBO Practical Course
"Population Genomics: background and tools" to be held in Procida, Italy,
13-19 March 2023 -
A lot of software can provide genotype likelihood for a #WGS #NGS sample, only one I know provide the likelihood of ALL 10 genotypes for a site, i.e. ANGSD.
Anyone knows any software that calculate all allele likelihood for a site? So I wanna know the probability of observing allele A, C, G, and T in a site. The ones I found only provide probability of one allele (consensus/random).
#Genomics #genomic #PopulationGenomics #bioinformatic #compBio
:boost_ok: :boost_requested: :mastoread:
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For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!
It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆
Read more at populationgeneticsgroup.org.uk
#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!
:boost_ok: :boost_requested: :mastogrin:
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Anyone out there in #PopGen #Populationgenomics #RNAseq or #Molecular biology have any leads on where to buy duplex-specific nuclease? Main provider is a Russian and unavailable to most because of sanctions. I have not been an alternative supplier or enzyme. Please boost!
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#introduction I deleted my Twitter Account! Associate Professor at Northeastern University with expertise in the population and evolutionary #genomics of #marine systems. Enjoy #rstats and #datavis. PI of the Evolving Seas RCN. Avid mountain biker, amateur ceramicist, #antiracist, and data organization snob. #SSEfolks #followforpopgenback #populationgenomics #evolution #blacklivesmatter #esebfolks #asnfolks #genetics #machinelearning #evolvingseas #pottery #ceramics #mountainbiking #MathBio
