#popgen — Public Fediverse posts

Last week, I updated #adegenet on #CRAN. This is an important update as it fixes a memory overflow problem for SNP data that has existed since 2016.

If you use #PopGen packages that import adegenet (e.g. #poppr, #vcfR, or #dartR), then you should update.

https://cran.r-project.org/web/packages/adegenet/ChangeLog

#RStats

Last week, I updated #adegenet on #CRAN. This is an important update as it fixes a memory overflow problem for SNP data that has existed since 2016.

If you use #PopGen packages that import adegenet (e.g. #poppr, #vcfR, or #dartR), then you should update.

https://cran.r-project.org/web/packages/adegenet/ChangeLog

#RStats

Last week, I updated #adegenet on #CRAN. This is an important update as it fixes a memory overflow problem for SNP data that has existed since 2016.

If you use #PopGen packages that import adegenet (e.g. #poppr, #vcfR, or #dartR), then you should update.

https://cran.r-project.org/web/packages/adegenet/ChangeLog

#RStats

Last week, I updated #adegenet on #CRAN. This is an important update as it fixes a memory overflow problem for SNP data that has existed since 2016.

If you use #PopGen packages that import adegenet (e.g. #poppr, #vcfR, or #dartR), then you should update.

https://cran.r-project.org/web/packages/adegenet/ChangeLog

#RStats

Last week, I updated #adegenet on #CRAN. This is an important update as it fixes a memory overflow problem for SNP data that has existed since 2016.

If you use #PopGen packages that import adegenet (e.g. #poppr, #vcfR, or #dartR), then you should update.

https://cran.r-project.org/web/packages/adegenet/ChangeLog

#RStats

If you're interested in population genetics and cooperation, you might be interested in our latest theory paper on the topic! Check it out!

⬇️ ⬇️
https://academic.oup.com/evolut/advance-article/doi/10.1093/evolut/qpae147/7821382
⬆️ ⬆️

#evolution #popgen #cooperation #altruism #recombination

Hi everybody,

I am pleased to share with you my latest work in collaboration with Augustin Cléssin and Nicolas Lartillot:

https://www.biorxiv.org/content/10.1101/2024.06.21.600052v1

GC-biased gene conversion (gBGC) is a process that distorts the segregation of heterozygous AT:GC polymorphisms during meiotic #recombination. This genome-wide non-Mendelian segregation has been shown to be a major source of #genetic load, earning the nickname of “Achille’s heel” of #genomes. (1/2)

#PopGen
#Evolution

Hi everybody,

I am pleased to share with you my latest work in collaboration with Augustin Cléssin and Nicolas Lartillot:

https://www.biorxiv.org/content/10.1101/2024.06.21.600052v1

GC-biased gene conversion (gBGC) is a process that distorts the segregation of heterozygous AT:GC polymorphisms during meiotic #recombination. This genome-wide non-Mendelian segregation has been shown to be a major source of #genetic load, earning the nickname of “Achille’s heel” of #genomes. (1/2)

#PopGen
#Evolution

Nice new work from Doc @edge on recovering polygenic scores from ancestral recombination graphs.

Scalability vs accuracy.

https://www.biorxiv.org/content/10.1101/2024.05.24.595829v1

#popgen #evol_gen #ARGs

#MathematicalBiology #evolution #evolutionarybiology #popgen #evolutionarydynamics #MathematicalModeling @Project_Telos

#MathematicalBiology #evolution #evolutionarybiology #popgen #evolutionarydynamics #MathematicalModeling @Project_Telos

#MathematicalBiology #evolution #evolutionarybiology #popgen #evolutionarydynamics #MathematicalModeling @Project_Telos

#MathematicalBiology #evolution #evolutionarybiology #popgen #evolutionarydynamics #MathematicalModeling @Project_Telos

Hello everyone,

I'm glad to share this preprint:

https://www.biorxiv.org/content/10.1101/2024.03.06.583651v1

PRDM9 is a gene that determines the location of most meiotic #recombination events through local histone methylation in humans and mice. It is also one of the fastest evolving gene in mammals.

In this preprint, we show that its molecular function in #meiosis is the same in salmonids!

This suggests that PRDM9's rapid #evolution has been going on for hundreds of Mys.

#PopGen

Hello Mastodon people,

I wanted to mention that I have a new preprint out on bioRxiv:

https://www.biorxiv.org/content/10.1101/2024.01.16.575829v1

I think it could be really useful for people interested in the consequences of #Recombination on #Genome #Evolution, but more generally in interpreting DFEs, positive selection and dN/dS.

I will take the time to make a thread once the final paper is published (I hope it will).

For those who will take the time to read it, don't hesitate to give me feedback 😊

#Popgen

Hello Mastodon people,

I wanted to mention that I have a new preprint out on bioRxiv:

https://www.biorxiv.org/content/10.1101/2024.01.16.575829v1

I think it could be really useful for people interested in the consequences of #Recombination on #Genome #Evolution, but more generally in interpreting DFEs, positive selection and dN/dS.

I will take the time to make a thread once the final paper is published (I hope it will).

For those who will take the time to read it, don't hesitate to give me feedback 😊

#Popgen

I am very pleased to share with the mastodon community the first part of my PhD work:

High prevalence of Prdm9-independent recombination hotspots in placental #mammals

https://www.biorxiv.org/content/10.1101/2023.11.17.567540v1

This work was done in collaboration with @djivanprentout Alexandre Laverré, Théo Tricou and @duret_lbbe. (1/8)

#Recombination #PopGen #Evolution #gBGC #PRDM9

Sex Unfolded Jacques Monod Conference. Third Edition in incredibly sunny Roscoff. Already 1 week ago. Thanks to all the participants! Many new ideas for the #evolutionofsex #recombination, #SexChromosomes #asexuality #evobio #popgen. 4th edition in 5 years by @KarineDoninck and Sylvain Glémin !

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

A new strain of Penicillium roqueforti discovered in Termignon cheese, a cheese I can't wait to taste, and lots of interesting results from this new paper by Tatiana Giraud's team, published in #EvolutionaryApplications
https://onlinelibrary.wiley.com/doi/10.1111/eva.13578
going together with a short video summary explaining domestication of cheese fungi
https://youtu.be/iN0A6dudWqI
#PopGen #PopulationGenomics #Biodiversity #Domestication

#PopGen #EvolMol #ThalerConference #MustWatch #AlternativeSplicing #SplicingErrors #DriftBarrier Amazing talk by @duret_lbbe here on the SEEM youtube channel 👇

https://ecoevo.social/@couplingdmi/110860290160070455

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

For any #popgen #scientists, the 56th @popgroup meeting is still accepting abstracts until the 30th Nov: there are still talks & poster slots available!

It will be hybrid: attend from the comfort of your home or witness glorious #London 🌆

Read more at populationgeneticsgroup.org.uk

#populationgenetics #PopulationGenomics #populationgenetic #Genomics #EvolutionaryGenetics #EvolutionaryGenomics please recommend me more tags to get this spread!

:boost_ok: :boost_requested: :mastogrin:

Anyone out there in #PopGen #Populationgenomics #RNAseq or #Molecular biology have any leads on where to buy duplex-specific nuclease? Main provider is a Russian and unavailable to most because of sanctions. I have not been an alternative supplier or enzyme. Please boost!

In 3 weeks, our #Conservation paper has 687 full-text reads! (Incl. ones on researchgate).

I think one of the strengths is using #ProbabilisticProgramming for small populations, letting us do #GWAS and #PopGen better and providing useful estimates back to the conservation practitioners. Lots of other strengths too (high-quality SNP calling) and correcting the record of analyses based off of incomplete genome annotation!

https://www.biorxiv.org/content/10.1101/2022.10.22.513130v1

In 3 weeks, our #Conservation paper has 687 full-text reads! (Incl. ones on researchgate).

I think one of the strengths is using #ProbabilisticProgramming for small populations, letting us do #GWAS and #PopGen better and providing useful estimates back to the conservation practitioners. Lots of other strengths too (high-quality SNP calling) and correcting the record of analyses based off of incomplete genome annotation!

https://www.biorxiv.org/content/10.1101/2022.10.22.513130v1

In 3 weeks, our #Conservation paper has 687 full-text reads! (Incl. ones on researchgate).

I think one of the strengths is using #ProbabilisticProgramming for small populations, letting us do #GWAS and #PopGen better and providing useful estimates back to the conservation practitioners. Lots of other strengths too (high-quality SNP calling) and correcting the record of analyses based off of incomplete genome annotation!

https://www.biorxiv.org/content/10.1101/2022.10.22.513130v1

In 3 weeks, our #Conservation paper has 687 full-text reads! (Incl. ones on researchgate).

I think one of the strengths is using #ProbabilisticProgramming for small populations, letting us do #GWAS and #PopGen better and providing useful estimates back to the conservation practitioners. Lots of other strengths too (high-quality SNP calling) and correcting the record of analyses based off of incomplete genome annotation!

https://www.biorxiv.org/content/10.1101/2022.10.22.513130v1

#Introduction again now that I have migrated to the evoeco instance. Some hashtags that align with my interests: #science
#evolution #popgen #biology #theory #proteins #bioinformatics #datascience #aging #prions #evolvability #robustness #astrobiology #epidemiology #COVID19 #economics #RiskAnalysis

Belated #introduction with some hashtags that align with my interests: #science
#evolution #popgen #biology #theory #proteins #bioinformatics #datascience #aging #prions #evolvability #robustness #astrobiology #epidemiology #COVID19 #economics #RiskAnalysis