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#lineages — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #lineages, aggregated by home.social.

  1. @rupdecat @mario_angst_sci

    I've just caved and set up Google calendar and contacts access BUT I've done it through #davx5 and am using the default calendar and contacts apps which came with #lineage.

    Long-term I think it would be fun to move away from having #Google manage that data for me (maybe using #radicale and #syncthing? forum.syncthing.net/t/how-to-s) but that can be an adventure for another day.

    #lineages
    #deGoogle #deGoogled #deGoogling

  2. Co-Circulation of 2 #Oropouche Virus #Lineages, #Amazon Basin, #Colombia, 2024

    Source: Emerging Infectious Diseases Journal, AbstractIn early 2024, explosive outbreaks of Oropouche virus (OROV) linked to a novel lineage were documented in the Amazon Region of Brazil. We report the introduction of this lineage into Colombia and its co-circulation with another OROV lineage. Continued surveillance is needed to prevent further spread of OROV in the Americas. ____

    etidioh.wordpress.com/2024/10/

  3. 📣📣So excited to see this #Consensus View on a naming system for #Dengue #lineages!
    With prevalence increasing globally and more #sequencing being done, this was really needed

    It includes tools to #identify new lineages

    International authorship have agreed on naming convention to aid #genomic #surveillance for
    The authors have done an amazing job of reaching consensus here ⬇️⬇️

    plos.io/47C0hR9

    #PLOSBiology

  4. #Virulence and #transmission vary between #Usutu virus #lineages in #Culex pipiens journals.plos.org/plosntds/art

    Therefore, we found evidence of lineage-specific differences in vectorial capacity and virulence to both the vector and vertebrate host which lead to balanced propagation of both viral lineages.

  5. #H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: link.springer.com/article/10.1

    The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.

  6. #H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: link.springer.com/article/10.1

    The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.

  7. #H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: link.springer.com/article/10.1

    The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.

  8. #H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: link.springer.com/article/10.1

    The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.

  9. #H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: link.springer.com/article/10.1

    The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.

  10. Tracking #SARSCoV2 #Lineages - Globally |02/17/24

    Top lineages -#30DayTrends (#G30):

    JN.1 (46.3%)
    JN.1.4 (17.3%)
    JN.1.1 (5.5%)
    JN.1.22 (2.4%)
    JN.1.7 (2.1%)
    JN.1.8.1 (1.8%)
    BA.2.86.1 (1.3%)
    HV.1 (1.3%)
    JN.1.2 (1.1%)
    JN.1.9 (1%)

    public.tableau.com/app/profile

    1/n

  11. Tracking - Globally |02/17/24

    Top lineages - ():

    JN.1 (46.3%)
    JN.1.4 (17.3%)
    JN.1.1 (5.5%)
    JN.1.22 (2.4%)
    JN.1.7 (2.1%)
    JN.1.8.1 (1.8%)
    BA.2.86.1 (1.3%)
    HV.1 (1.3%)
    JN.1.2 (1.1%)
    JN.1.9 (1%)

    public.tableau.com/app/profile

    1/n

  12. Tracking #SARSCoV2 #Lineages - Globally |02/17/24

    Top lineages -#30DayTrends (#G30):

    JN.1 (46.3%)
    JN.1.4 (17.3%)
    JN.1.1 (5.5%)
    JN.1.22 (2.4%)
    JN.1.7 (2.1%)
    JN.1.8.1 (1.8%)
    BA.2.86.1 (1.3%)
    HV.1 (1.3%)
    JN.1.2 (1.1%)
    JN.1.9 (1%)

    public.tableau.com/app/profile

    1/n

  13. Tracking #SARSCoV2 #Lineages - Globally |02/17/24

    Top lineages -#30DayTrends (#G30):

    JN.1 (46.3%)
    JN.1.4 (17.3%)
    JN.1.1 (5.5%)
    JN.1.22 (2.4%)
    JN.1.7 (2.1%)
    JN.1.8.1 (1.8%)
    BA.2.86.1 (1.3%)
    HV.1 (1.3%)
    JN.1.2 (1.1%)
    JN.1.9 (1%)

    public.tableau.com/app/profile

    1/n

  14. Tracking #SARSCoV2 #Lineages - Globally |02/17/24

    Top lineages -#30DayTrends (#G30):

    JN.1 (46.3%)
    JN.1.4 (17.3%)
    JN.1.1 (5.5%)
    JN.1.22 (2.4%)
    JN.1.7 (2.1%)
    JN.1.8.1 (1.8%)
    BA.2.86.1 (1.3%)
    HV.1 (1.3%)
    JN.1.2 (1.1%)
    JN.1.9 (1%)

    public.tableau.com/app/profile

    1/n

  15. Tracking #SARSCoV2 #Lineages - Globally |11/25/23

    Top lineages -#30DayTrends (#G30):

    HV.1 (16.4%)⬆️
    HK.3 (10.5%)
    JN.1 (4.8%)🚀👀
    EG.5.1.1 (4.7%)
    JG.3 (4.4%)
    JD.1.1 (3.8%)
    EG.5.1 (3.5%)
    EG.5.1.3 (2.7%)
    FL.1.5.1 (2.6%)
    BA.2.86.1 (2.5%)

    Track public.tableau.com/app/profile 1/n

  16. Tracking - Globally |11/25/23

    Top lineages - ():

    HV.1 (16.4%)⬆️
    HK.3 (10.5%)
    JN.1 (4.8%)🚀👀
    EG.5.1.1 (4.7%)
    JG.3 (4.4%)
    JD.1.1 (3.8%)
    EG.5.1 (3.5%)
    EG.5.1.3 (2.7%)
    FL.1.5.1 (2.6%)
    BA.2.86.1 (2.5%)

    Track public.tableau.com/app/profile 1/n

  17. Tracking #SARSCoV2 #Lineages - Globally |11/25/23

    Top lineages -#30DayTrends (#G30):

    HV.1 (16.4%)⬆️
    HK.3 (10.5%)
    JN.1 (4.8%)🚀👀
    EG.5.1.1 (4.7%)
    JG.3 (4.4%)
    JD.1.1 (3.8%)
    EG.5.1 (3.5%)
    EG.5.1.3 (2.7%)
    FL.1.5.1 (2.6%)
    BA.2.86.1 (2.5%)

    Track public.tableau.com/app/profile 1/n

  18. Tracking #SARSCoV2 #Lineages - Globally |11/25/23

    Top lineages -#30DayTrends (#G30):

    HV.1 (16.4%)⬆️
    HK.3 (10.5%)
    JN.1 (4.8%)🚀👀
    EG.5.1.1 (4.7%)
    JG.3 (4.4%)
    JD.1.1 (3.8%)
    EG.5.1 (3.5%)
    EG.5.1.3 (2.7%)
    FL.1.5.1 (2.6%)
    BA.2.86.1 (2.5%)

    Track public.tableau.com/app/profile 1/n

  19. Tracking #SARSCoV2 #Lineages - Globally |11/25/23

    Top lineages -#30DayTrends (#G30):

    HV.1 (16.4%)⬆️
    HK.3 (10.5%)
    JN.1 (4.8%)🚀👀
    EG.5.1.1 (4.7%)
    JG.3 (4.4%)
    JD.1.1 (3.8%)
    EG.5.1 (3.5%)
    EG.5.1.3 (2.7%)
    FL.1.5.1 (2.6%)
    BA.2.86.1 (2.5%)

    Track public.tableau.com/app/profile 1/n

  20. @rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)

    Top lineages -#30DayTrends (#G30) | 31,481 Sequences:

    HV.1 (8.2%)
    EG.5.1.1 (8%)
    HK.3 (7.1%)
    EG.5.1 (5.4%)
    EG.5.1.3 (5%)
    FL.1.5.1 (4.6%)
    XBB.1.16.6 (4.1%)
    --
    BA.2.86.1 (1%)
    JN.1 (0.5%)

    public.tableau.com/app/profile

  21. @rajlabn.bsky.social Tracking - Globally (10/28/2023)

    Top lineages - () | 31,481 Sequences:

    HV.1 (8.2%)
    EG.5.1.1 (8%)
    HK.3 (7.1%)
    EG.5.1 (5.4%)
    EG.5.1.3 (5%)
    FL.1.5.1 (4.6%)
    XBB.1.16.6 (4.1%)
    --
    BA.2.86.1 (1%)
    JN.1 (0.5%)

    public.tableau.com/app/profile

  22. @rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)

    Top lineages -#30DayTrends (#G30) | 31,481 Sequences:

    HV.1 (8.2%)
    EG.5.1.1 (8%)
    HK.3 (7.1%)
    EG.5.1 (5.4%)
    EG.5.1.3 (5%)
    FL.1.5.1 (4.6%)
    XBB.1.16.6 (4.1%)
    --
    BA.2.86.1 (1%)
    JN.1 (0.5%)

    public.tableau.com/app/profile

  23. @rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)

    Top lineages -#30DayTrends (#G30) | 31,481 Sequences:

    HV.1 (8.2%)
    EG.5.1.1 (8%)
    HK.3 (7.1%)
    EG.5.1 (5.4%)
    EG.5.1.3 (5%)
    FL.1.5.1 (4.6%)
    XBB.1.16.6 (4.1%)
    --
    BA.2.86.1 (1%)
    JN.1 (0.5%)

    public.tableau.com/app/profile

  24. By Raj Rajnarayanan @RajlabN

    #OmicronUpdates #SARSCoV2 #Lineages

    1739+ Omicron Lineages

    {997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}

    With pending issues
    @PangoNetwork
    especially BA.2.86.x sub-lineages....

    Omicron will hit 1000 within a week!

    Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)

    Top 10 (#30DayTrends)
    EG.5.1.1 ,
    EG.5.1,
    XBB.1.16,
    XBB.1.16.6,
    EG.5.1.3,
    FL.1.5.1,
    XBB.1.5,
    GJ.1.2,
    XBB.1.16.1,
    XBB.1.16.11

    #COVID19 #Omicron @auscovid19

    Twitter/X source: twitter.com/RajlabN/status/170

  25. By Raj Rajnarayanan @RajlabN

    #OmicronUpdates #SARSCoV2 #Lineages

    1739+ Omicron Lineages

    {997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}

    With pending issues
    @PangoNetwork
    especially BA.2.86.x sub-lineages....

    Omicron will hit 1000 within a week!

    Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)

    Top 10 (#30DayTrends)
    EG.5.1.1 ,
    EG.5.1,
    XBB.1.16,
    XBB.1.16.6,
    EG.5.1.3,
    FL.1.5.1,
    XBB.1.5,
    GJ.1.2,
    XBB.1.16.1,
    XBB.1.16.11

    #COVID19 #Omicron @auscovid19

    Twitter/X source: twitter.com/RajlabN/status/170

  26. By Raj Rajnarayanan @RajlabN

    #OmicronUpdates #SARSCoV2 #Lineages

    1739+ Omicron Lineages

    {997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}

    With pending issues
    @PangoNetwork
    especially BA.2.86.x sub-lineages....

    Omicron will hit 1000 within a week!

    Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)

    Top 10 (#30DayTrends)
    EG.5.1.1 ,
    EG.5.1,
    XBB.1.16,
    XBB.1.16.6,
    EG.5.1.3,
    FL.1.5.1,
    XBB.1.5,
    GJ.1.2,
    XBB.1.16.1,
    XBB.1.16.11

    #COVID19 #Omicron @auscovid19

    Twitter/X source: twitter.com/RajlabN/status/170

  27. By Raj Rajnarayanan @RajlabN

    #OmicronUpdates #SARSCoV2 #Lineages

    1739+ Omicron Lineages

    {997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}

    With pending issues
    @PangoNetwork
    especially BA.2.86.x sub-lineages....

    Omicron will hit 1000 within a week!

    Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)

    Top 10 (#30DayTrends)
    EG.5.1.1 ,
    EG.5.1,
    XBB.1.16,
    XBB.1.16.6,
    EG.5.1.3,
    FL.1.5.1,
    XBB.1.5,
    GJ.1.2,
    XBB.1.16.1,
    XBB.1.16.11

    #COVID19 #Omicron @auscovid19

    Twitter/X source: twitter.com/RajlabN/status/170

  28. ''"Collectively, available #evidence does not suggest that #EG5 has additional public health #risks relative to the other currently circulating #Omicron descendent #lineages," the WHO said in a risk evaluation.''

  29. Tracking #SARSCoV2 #Lineages - Globally

    Top lineages -#20DayTrends (#G20):

    XBB.1.5 (36.6%)⬇️
    XBB.1.9.1 (11.5%)⬆️
    EG.1 (4.7%)⬆️
    XBB.1.16 (4.4%)⬆️
    XBB.1.9.2 (3.1%)
    XBB.2.3 (1.8%)
    XBB.1.5.13 (1.6%)
    XBB.1.16.1 (1.5%)

    public.tableau.com/app/profile

    Updated 04/29/23

  30. Tracking #SARSCoV2 #Lineages - Globally

    Top lineages -#20DayTrends (#G20):

    XBB.1.5 (39.4%)⬇️
    XBB.1.9.1 (9.9%)
    EG.1 (4.3%)
    XBB.1.16 (3.5%)
    XBB.1.9.2 (2.7%)
    XBB.1.5.13 (1.6%)
    XBB.1.5.7 (1.6%)
    XBB.2.3 (1.5%)

    public.tableau.com/app/profile

    Updated 04/22/23

  31. Tracking #SARSCoV2 #Lineages - Globally

    Top lineages -#20DayTrends (#G20):

    XBB.1.5 (46.4%)⬇️
    XBB.1.9.1 (10.1%)⬆️
    XBB.1.16 (4.9%)⬆️
    EG.1 (3.7%)⬆️
    CH.1.1 (2.3%)⬇️
    XBB.1.9.2 (2.3%)
    --
    XBB.2.3 (1.3%)⬆️

    Tracker: public.tableau.com/app/profile

    Updated 04/15/23

  32. #SARSCoV2 #lineages #Collection42 maintained by
    @wolfeagle1989 provides a table of growth advantages

    👀XBB.1.16* and XBB.2.3* group of lineages

  33. #SARSCoV2 #lineages #Collection24 maintained by @wolfeagle1989 provides a table of growth advantages

    H/T @siamosolocani @GenSpectrum

    ---
    RT @siamosolocani
    #Collection24 maintained and run by @wolfeagle1989 shows the game as it is
    XBB.1.16 likely still the fastest but now less lonely, i would call XBC.1.6 as main contender but FP.1 / XBB.2.3.2 / XBB.2.3.4 / XBB.1.28.1 / XBB.1.31 /XBB.1.22.2 are NOT out of the game.
    twitter.com/siamosolocani/stat

  34. Tracking #SARSCoV2 #Lineages - Globally

    Top lineages -#20DayTrends (#G20):

    XBB.1.5 (49.7%)
    XBB.1.9.1 (9.2%)⬆️
    EG.1 (2.9%)
    CH.1.1 (2.9%)
    XBB.1.16* (2.3%)
    XBB.1.5.7 (2.2%)
    XBB.1.9.2 (2.1%)

    Tracker: public.tableau.com/app/profile

    Updated 04/08/23

  35. Tracking #SARSCoV2 #Lineages - Globally

    Top lineages -#20DayTrends (#G20):

    XBB.1.5 (50.4%)
    XBB.1.9.1 (7.2%)
    CH.1.1 (3.0%)
    EG.1 (2.7%)
    XBB.1.16 (2.5%)⬆️👀
    BQ.1.1 (2%)
    XBB.1.5.7 (2%)
    CH.1.1.1 (2%)

    Tracker: public.tableau.com/app/profile

    Updated 04/02/23