#lineages — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #lineages, aggregated by home.social.
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I've just caved and set up Google calendar and contacts access BUT I've done it through #davx5 and am using the default calendar and contacts apps which came with #lineage.
Long-term I think it would be fun to move away from having #Google manage that data for me (maybe using #radicale and #syncthing? https://forum.syncthing.net/t/how-to-sync-contacts-and-calendars-between-desktop-and-android-without-root/21326) but that can be an adventure for another day.
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I've just caved and set up Google calendar and contacts access BUT I've done it through #davx5 and am using the default calendar and contacts apps which came with #lineage.
Long-term I think it would be fun to move away from having #Google manage that data for me (maybe using #radicale and #syncthing? https://forum.syncthing.net/t/how-to-sync-contacts-and-calendars-between-desktop-and-android-without-root/21326) but that can be an adventure for another day.
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Local and introduced #lineages drive #MERS-CoV #recombination in Egyptian #camels, https://etidiohnew.blogspot.com/2025/12/local-and-introduced-lineages-drive.html
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Local and introduced #lineages drive #MERS-CoV #recombination in Egyptian #camels, https://etidiohnew.blogspot.com/2025/12/local-and-introduced-lineages-drive.html
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Genetic #reassortment and diversification of #host specificity have driven evolutionary trajectories of #lineages of #panzootic #H5N1 #influenza, https://etidiohnew.blogspot.com/2025/08/genetic-reassortment-and.html
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Genetic #reassortment and diversification of #host specificity have driven evolutionary trajectories of #lineages of #panzootic #H5N1 #influenza, https://etidiohnew.blogspot.com/2025/08/genetic-reassortment-and.html
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Co-Circulation of 2 #Oropouche Virus #Lineages during #Outbreak, #Amazon Region of #Peru, 2023–2024, https://etidiohnew.blogspot.com/2025/03/co-circulation-of-2-oropouche-virus.html
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Co-Circulation of 2 #Oropouche Virus #Lineages during #Outbreak, #Amazon Region of #Peru, 2023–2024, https://etidiohnew.blogspot.com/2025/03/co-circulation-of-2-oropouche-virus.html
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Co-Circulation of 2 #Oropouche Virus #Lineages, #Amazon Basin, #Colombia, 2024
Source: Emerging Infectious Diseases Journal, AbstractIn early 2024, explosive outbreaks of Oropouche virus (OROV) linked to a novel lineage were documented in the Amazon Region of Brazil. We report the introduction of this lineage into Colombia and its co-circulation with another OROV lineage. Continued surveillance is needed to prevent further spread of OROV in the Americas. ____
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Co-Circulation of 2 #Oropouche Virus #Lineages, #Amazon Basin, #Colombia, 2024
Source: Emerging Infectious Diseases Journal, AbstractIn early 2024, explosive outbreaks of Oropouche virus (OROV) linked to a novel lineage were documented in the Amazon Region of Brazil. We report the introduction of this lineage into Colombia and its co-circulation with another OROV lineage. Continued surveillance is needed to prevent further spread of OROV in the Americas. ____
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📣📣So excited to see this #Consensus View on a naming system for #Dengue #lineages!
With prevalence increasing globally and more #sequencing being done, this was really neededIt includes tools to #identify new lineages
International authorship have agreed on naming convention to aid #genomic #surveillance for
The authors have done an amazing job of reaching consensus here ⬇️⬇️ -
📣📣So excited to see this #Consensus View on a naming system for #Dengue #lineages!
With prevalence increasing globally and more #sequencing being done, this was really neededIt includes tools to #identify new lineages
International authorship have agreed on naming convention to aid #genomic #surveillance for
The authors have done an amazing job of reaching consensus here ⬇️⬇️ -
#Virulence and #transmission vary between #Usutu virus #lineages in #Culex pipiens https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0012295
Therefore, we found evidence of lineage-specific differences in vectorial capacity and virulence to both the vector and vertebrate host which lead to balanced propagation of both viral lineages.
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#Virulence and #transmission vary between #Usutu virus #lineages in #Culex pipiens https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0012295
Therefore, we found evidence of lineage-specific differences in vectorial capacity and virulence to both the vector and vertebrate host which lead to balanced propagation of both viral lineages.
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#H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: https://link.springer.com/article/10.1007/s11262-024-02068-5
The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.
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#H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: https://link.springer.com/article/10.1007/s11262-024-02068-5
The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.
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#H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: https://link.springer.com/article/10.1007/s11262-024-02068-5
The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.
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#H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: https://link.springer.com/article/10.1007/s11262-024-02068-5
The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.
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#H6N2 #reassortant avian #influenza virus isolate in wild #birds in #Jiangxi Province, #China, Virus Genes: https://link.springer.com/article/10.1007/s11262-024-02068-5
The H6N2 isolate possessed a complex #genome, indicating it is a multi-gene #recombinant virus with genetic material from both #Eurasian and North #American #lineages.
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Unsupervised #identification of significant #lineages of #SARS-CoV-2 through scalable #machinelearning methods https://www.pnas.org/doi/abs/10.1073/pnas.2317284121?af=R
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Unsupervised #identification of significant #lineages of #SARS-CoV-2 through scalable #machinelearning methods https://www.pnas.org/doi/abs/10.1073/pnas.2317284121?af=R
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Tracking #SARSCoV2 #Lineages - Globally |02/17/24
Top lineages -#30DayTrends (#G30):
JN.1 (46.3%)
JN.1.4 (17.3%)
JN.1.1 (5.5%)
JN.1.22 (2.4%)
JN.1.7 (2.1%)
JN.1.8.1 (1.8%)
BA.2.86.1 (1.3%)
HV.1 (1.3%)
JN.1.2 (1.1%)
JN.1.9 (1%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
1/n
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Tracking #SARSCoV2 #Lineages - Globally |02/17/24
Top lineages -#30DayTrends (#G30):
JN.1 (46.3%)
JN.1.4 (17.3%)
JN.1.1 (5.5%)
JN.1.22 (2.4%)
JN.1.7 (2.1%)
JN.1.8.1 (1.8%)
BA.2.86.1 (1.3%)
HV.1 (1.3%)
JN.1.2 (1.1%)
JN.1.9 (1%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
1/n
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Tracking #SARSCoV2 #Lineages - Globally |02/17/24
Top lineages -#30DayTrends (#G30):
JN.1 (46.3%)
JN.1.4 (17.3%)
JN.1.1 (5.5%)
JN.1.22 (2.4%)
JN.1.7 (2.1%)
JN.1.8.1 (1.8%)
BA.2.86.1 (1.3%)
HV.1 (1.3%)
JN.1.2 (1.1%)
JN.1.9 (1%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
1/n
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Tracking #SARSCoV2 #Lineages - Globally |02/17/24
Top lineages -#30DayTrends (#G30):
JN.1 (46.3%)
JN.1.4 (17.3%)
JN.1.1 (5.5%)
JN.1.22 (2.4%)
JN.1.7 (2.1%)
JN.1.8.1 (1.8%)
BA.2.86.1 (1.3%)
HV.1 (1.3%)
JN.1.2 (1.1%)
JN.1.9 (1%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
1/n
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Tracking #SARSCoV2 #Lineages - Globally |02/17/24
Top lineages -#30DayTrends (#G30):
JN.1 (46.3%)
JN.1.4 (17.3%)
JN.1.1 (5.5%)
JN.1.22 (2.4%)
JN.1.7 (2.1%)
JN.1.8.1 (1.8%)
BA.2.86.1 (1.3%)
HV.1 (1.3%)
JN.1.2 (1.1%)
JN.1.9 (1%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
1/n
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Convergent #evolution of #SARS-CoV-2 #XBB #lineages on #RBD 455–456 synergistically enhances #antibody #evasion and #ACE2 binding https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011868
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Convergent #evolution of #SARS-CoV-2 #XBB #lineages on #RBD 455–456 synergistically enhances #antibody #evasion and #ACE2 binding https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011868
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Tracking #SARSCoV2 #Lineages - Globally |11/25/23
Top lineages -#30DayTrends (#G30):
HV.1 (16.4%)⬆️
HK.3 (10.5%)
JN.1 (4.8%)🚀👀
EG.5.1.1 (4.7%)
JG.3 (4.4%)
JD.1.1 (3.8%)
EG.5.1 (3.5%)
EG.5.1.3 (2.7%)
FL.1.5.1 (2.6%)
BA.2.86.1 (2.5%)Track https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20 1/n
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Tracking #SARSCoV2 #Lineages - Globally |11/25/23
Top lineages -#30DayTrends (#G30):
HV.1 (16.4%)⬆️
HK.3 (10.5%)
JN.1 (4.8%)🚀👀
EG.5.1.1 (4.7%)
JG.3 (4.4%)
JD.1.1 (3.8%)
EG.5.1 (3.5%)
EG.5.1.3 (2.7%)
FL.1.5.1 (2.6%)
BA.2.86.1 (2.5%)Track https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20 1/n
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Tracking #SARSCoV2 #Lineages - Globally |11/25/23
Top lineages -#30DayTrends (#G30):
HV.1 (16.4%)⬆️
HK.3 (10.5%)
JN.1 (4.8%)🚀👀
EG.5.1.1 (4.7%)
JG.3 (4.4%)
JD.1.1 (3.8%)
EG.5.1 (3.5%)
EG.5.1.3 (2.7%)
FL.1.5.1 (2.6%)
BA.2.86.1 (2.5%)Track https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20 1/n
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Tracking #SARSCoV2 #Lineages - Globally |11/25/23
Top lineages -#30DayTrends (#G30):
HV.1 (16.4%)⬆️
HK.3 (10.5%)
JN.1 (4.8%)🚀👀
EG.5.1.1 (4.7%)
JG.3 (4.4%)
JD.1.1 (3.8%)
EG.5.1 (3.5%)
EG.5.1.3 (2.7%)
FL.1.5.1 (2.6%)
BA.2.86.1 (2.5%)Track https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20 1/n
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Tracking #SARSCoV2 #Lineages - Globally |11/25/23
Top lineages -#30DayTrends (#G30):
HV.1 (16.4%)⬆️
HK.3 (10.5%)
JN.1 (4.8%)🚀👀
EG.5.1.1 (4.7%)
JG.3 (4.4%)
JD.1.1 (3.8%)
EG.5.1 (3.5%)
EG.5.1.3 (2.7%)
FL.1.5.1 (2.6%)
BA.2.86.1 (2.5%)Track https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20 1/n
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#Italy, #Omicron subvariant #BA286 reported at 1.3% of genetically characterized isolates, with #EG5 still prevalent, #DV7 is also under monitoring, https://www.ilsole24ore.com/art/covid-iss-variante-dominante-italia-e-eris-51percento-AFbaYJTB #SARS_COV_2 #covid19 #lineages #VUMs
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#Italy, #Omicron subvariant #BA286 reported at 1.3% of genetically characterized isolates, with #EG5 still prevalent, #DV7 is also under monitoring, https://www.ilsole24ore.com/art/covid-iss-variante-dominante-italia-e-eris-51percento-AFbaYJTB #SARS_COV_2 #covid19 #lineages #VUMs
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#Italy, #Omicron subvariant #BA286 reported at 1.3% of genetically characterized isolates, with #EG5 still prevalent, #DV7 is also under monitoring, https://www.ilsole24ore.com/art/covid-iss-variante-dominante-italia-e-eris-51percento-AFbaYJTB #SARS_COV_2 #covid19 #lineages #VUMs
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#Italy, #Omicron subvariant #BA286 reported at 1.3% of genetically characterized isolates, with #EG5 still prevalent, #DV7 is also under monitoring, https://www.ilsole24ore.com/art/covid-iss-variante-dominante-italia-e-eris-51percento-AFbaYJTB #SARS_COV_2 #covid19 #lineages #VUMs
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#Italy, #Omicron subvariant #BA286 reported at 1.3% of genetically characterized isolates, with #EG5 still prevalent, #DV7 is also under monitoring, https://www.ilsole24ore.com/art/covid-iss-variante-dominante-italia-e-eris-51percento-AFbaYJTB #SARS_COV_2 #covid19 #lineages #VUMs
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@rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)
Top lineages -#30DayTrends (#G30) | 31,481 Sequences:
HV.1 (8.2%)
EG.5.1.1 (8%)
HK.3 (7.1%)
EG.5.1 (5.4%)
EG.5.1.3 (5%)
FL.1.5.1 (4.6%)
XBB.1.16.6 (4.1%)
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BA.2.86.1 (1%)
JN.1 (0.5%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
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@rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)
Top lineages -#30DayTrends (#G30) | 31,481 Sequences:
HV.1 (8.2%)
EG.5.1.1 (8%)
HK.3 (7.1%)
EG.5.1 (5.4%)
EG.5.1.3 (5%)
FL.1.5.1 (4.6%)
XBB.1.16.6 (4.1%)
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BA.2.86.1 (1%)
JN.1 (0.5%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
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@rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)
Top lineages -#30DayTrends (#G30) | 31,481 Sequences:
HV.1 (8.2%)
EG.5.1.1 (8%)
HK.3 (7.1%)
EG.5.1 (5.4%)
EG.5.1.3 (5%)
FL.1.5.1 (4.6%)
XBB.1.16.6 (4.1%)
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BA.2.86.1 (1%)
JN.1 (0.5%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
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@rajlabn.bsky.social Tracking #Covid #SARSCoV2 #Lineages - Globally (10/28/2023)
Top lineages -#30DayTrends (#G30) | 31,481 Sequences:
HV.1 (8.2%)
EG.5.1.1 (8%)
HK.3 (7.1%)
EG.5.1 (5.4%)
EG.5.1.3 (5%)
FL.1.5.1 (4.6%)
XBB.1.16.6 (4.1%)
--
BA.2.86.1 (1%)
JN.1 (0.5%)https://public.tableau.com/app/profile/raj.rajnarayanan/viz/ConvergentLineages-VariantSoup-World/G20
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By Raj Rajnarayanan @RajlabN
#OmicronUpdates #SARSCoV2 #Lineages
1739+ Omicron Lineages
{997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}
With pending issues
@PangoNetwork
especially BA.2.86.x sub-lineages....Omicron will hit 1000 within a week!
Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)
Top 10 (#30DayTrends)
EG.5.1.1 ,
EG.5.1,
XBB.1.16,
XBB.1.16.6,
EG.5.1.3,
FL.1.5.1,
XBB.1.5,
GJ.1.2,
XBB.1.16.1,
XBB.1.16.11Twitter/X source: https://twitter.com/RajlabN/status/1700361822119850431
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By Raj Rajnarayanan @RajlabN
#OmicronUpdates #SARSCoV2 #Lineages
1739+ Omicron Lineages
{997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}
With pending issues
@PangoNetwork
especially BA.2.86.x sub-lineages....Omicron will hit 1000 within a week!
Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)
Top 10 (#30DayTrends)
EG.5.1.1 ,
EG.5.1,
XBB.1.16,
XBB.1.16.6,
EG.5.1.3,
FL.1.5.1,
XBB.1.5,
GJ.1.2,
XBB.1.16.1,
XBB.1.16.11Twitter/X source: https://twitter.com/RajlabN/status/1700361822119850431
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By Raj Rajnarayanan @RajlabN
#OmicronUpdates #SARSCoV2 #Lineages
1739+ Omicron Lineages
{997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}
With pending issues
@PangoNetwork
especially BA.2.86.x sub-lineages....Omicron will hit 1000 within a week!
Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)
Top 10 (#30DayTrends)
EG.5.1.1 ,
EG.5.1,
XBB.1.16,
XBB.1.16.6,
EG.5.1.3,
FL.1.5.1,
XBB.1.5,
GJ.1.2,
XBB.1.16.1,
XBB.1.16.11Twitter/X source: https://twitter.com/RajlabN/status/1700361822119850431
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By Raj Rajnarayanan @RajlabN
#OmicronUpdates #SARSCoV2 #Lineages
1739+ Omicron Lineages
{997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}
With pending issues
@PangoNetwork
especially BA.2.86.x sub-lineages....Omicron will hit 1000 within a week!
Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)
Top 10 (#30DayTrends)
EG.5.1.1 ,
EG.5.1,
XBB.1.16,
XBB.1.16.6,
EG.5.1.3,
FL.1.5.1,
XBB.1.5,
GJ.1.2,
XBB.1.16.1,
XBB.1.16.11Twitter/X source: https://twitter.com/RajlabN/status/1700361822119850431
-
By Raj Rajnarayanan @RajlabN
#OmicronUpdates #SARSCoV2 #Lineages
1739+ Omicron Lineages
{997+ designated #Omicron sub-lineages and 742+ #recombinants with at least one omicron partner!}
With pending issues
@PangoNetwork
especially BA.2.86.x sub-lineages....Omicron will hit 1000 within a week!
Out of 1739 designated Omicrons... 369 are still in circulation (at least one sequence reported with specimen collection dates in the last 30 days)
Top 10 (#30DayTrends)
EG.5.1.1 ,
EG.5.1,
XBB.1.16,
XBB.1.16.6,
EG.5.1.3,
FL.1.5.1,
XBB.1.5,
GJ.1.2,
XBB.1.16.1,
XBB.1.16.11Twitter/X source: https://twitter.com/RajlabN/status/1700361822119850431
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Happy Mother’s Day to our extended matrilineages throughout prehistory! https://www.phylopic.org/nodes/105d17a4-9706-4fd5-85d7-becffaf6250a/lineage #mothersday #evolution #evolutionary #evolutionarybiology #lineages