#rocrate — Public Fediverse posts

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

Specification for RO-Crate 1.2 released
https://galaxyproject.org/news/2025-06-04-ro-crate-1-2-release/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #EuroScienceGateway #rocrate #fair #research_data #research #data

> Your abstract 'Live Demo: From Snakemake Run to Scholarly Record - Automatic Nanopublications & Workflow Run RO‑Crate Generation' has been successfully submitted. It is registered with the number #150. You will be notified by email with the submission details.

I have quite some work to do ...

PS should have tagged you @fbartusch 😉
#nanopub #ROcrate #Snakemake #derse26

From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025

https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025

#OpenScience #ReproducibleResearch #GalaxyProject #ROCrate #WorkflowHub #Bioinformatics #FAIRData #ResearchTools #LifeSciences #EuroScienceGateway

From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025

https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025

#OpenScience #ReproducibleResearch #GalaxyProject #ROCrate #WorkflowHub #Bioinformatics #FAIRData #ResearchTools #LifeSciences #EuroScienceGateway

Just learned about RO-crate to ensure your datasets have standardized metadata. Are there other standards out there?

https://www.researchobject.org/ro-crate/about_ro_crate

#Openscience #FAIR #ROcrate

Webby #FDO at #deRSE25
- Intro to JSON-LD https://doi.org/10.5281/zenodo.14920117
- Intro to webby FDOs https://doi.org/10.5281/zenodo.14882665
- Intro to #FAIRSignposting https://doi.org/10.5281/zenodo.14882785
- Intro to #ROCrate https://bit.ly/derseROC
- Demo by @SenckenbergWorld https://tinyurl.com/webbyFDO-demo-deRSE25

@NFDI @ZBMED

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

I've open sourced RdfCrate, a Python library I've been using at work to generate RO-Crates for research metadata.

It was motivated by finding that RDF triples are easier to work with than JSON-LD, and that rdflib is a brilliant foundation to build on top of.

https://github.com/WEHI-SODA-Hub/RdfCrate

#rocrate #rdf #rdm

Support for #ELNFileFormat and #ROCrate was added to the #LinkAhead Crawler in version 0.10.0!

Documentation is still work in progress, but you can find some examples in the unit tests of its repository on #gitlab :

https://gitlab.com/linkahead/linkahead-crawler

@deltablot #ELN

You ask, we listen
#DaMaLOS2023 deadline extended to 07.April.2023
Info at https://zbmed.github.io/damalos/

#LinkedOpenScience #OpenScience #Metadata #FAIR
#ROCrate #ResearchObjects
#ResearchMetrics #RSE #Reproducibility

@eswc_conf @ZBMED @GESIS #UniCologne #FraunhoferFOKUS

📢 Attention, ELN users! We’ve started developing support for the #ELNFileFormat in our LinkAhead Crawler!
This new extension will soon enable our Crawler to process data in the ELN File Format, which is supported by various electronic lab notebooks, including #elabftw and #kadi4mat. Our goal is to enhance interoperability between research data management tools and offer scientists even better solutions for data management!🔬
Stay tuned for more updates!
#rocrate #rocrates #jsonld #ELN @deltablot

Leandro Liborio talking about "The Galaxy Platform: Applications to Catalysis Workflows".

Great to see that Galaxy proves useful for Materials science, i.e. for disciplines outside the life sciences. One of the exciting developments within #EuroScienceGateway and great work, Leandro!

The combination of building blocks in the slide, #UseGalaxy, #Zenodo, #ROCrate, should be very familiar to everyone in the audience by now 😃

#GCC2024 @unifreiburg

A short update on the new #Trove Government section of the #GLAMWorkbench, the underlying work using #ROCrate to capture and integrate metadata about GW resources, some interface tweaks, and data on 24,997 digitised Parliamentary Papers! https://updates.timsherratt.org/2024/02/27/new-glam-workbench.html #histodons #GLAM #digitalHumanities

I've been playing around a lot with RO-Crate lately. It's a way of describing & packaging research data. Here's a post about how I've updated the #Trove Newspaper & Gazette Harvester to automatically document every harvest it creates using RO-Crate: https://updates.timsherratt.org/2023/08/31/some-important-updates.html #researchInfrastructure #rocrate #glam #digitalHumanities

Paul is talking about #usegalaxy and #rocrate (Research Object). Huge thanks to @elixireurope and ELIXIR Belgium for sponsoring this work and the participation of Paul at #gcc2023

Currently: Learning from the very interesting workshop about #ROCrate and knowledge graphs at the #OSF2023DE. Exporting from #LinkAhead to RO-Crates could be a very interesting feature indeed 🤩

@soilandreyes The really cool thing about this training for #Fediverse users is that the #ROCrate specification heavily uses JSON-LD, which is an integral part of the #ActivityPub specification which powers the fediverse!

Do you want to learn how to use JSON-LD in another context? Check out this new module for an actionable guide to making your #bioinformatics workflows #FAIR!

📢 Attention, ELN users! We’ve started developing support for the #ELNFileFormat in our LinkAhead Crawler!
This new extension will soon enable our Crawler to process data in the ELN File Format, which is supported by various electronic lab notebooks, including #elabftw and #kadi4mat. Our goal is to enhance interoperability between research data management tools and offer scientists even better solutions for data management!🔬
Stay tuned for more updates!
#rocrate #rocrates #jsonld #ELN @deltablot

📢 Attention, ELN users! We’ve started developing support for the #ELNFileFormat in our LinkAhead Crawler!
This new extension will soon enable our Crawler to process data in the ELN File Format, which is supported by various electronic lab notebooks, including #elabftw and #kadi4mat. Our goal is to enhance interoperability between research data management tools and offer scientists even better solutions for data management!🔬
Stay tuned for more updates!
#rocrate #rocrates #jsonld #ELN @deltablot

Paul is talking about #usegalaxy and #rocrate (Research Object). Huge thanks to @elixireurope and ELIXIR Belgium for sponsoring this work and the participation of Paul at #gcc2023

Paul is talking about #usegalaxy and #rocrate (Research Object). Huge thanks to @elixireurope and ELIXIR Belgium for sponsoring this work and the participation of Paul at #gcc2023

Paul is talking about #usegalaxy and #rocrate (Research Object). Huge thanks to @elixireurope and ELIXIR Belgium for sponsoring this work and the participation of Paul at #gcc2023

Paul is talking about #usegalaxy and #rocrate (Research Object). Huge thanks to @elixireurope and ELIXIR Belgium for sponsoring this work and the participation of Paul at #gcc2023