#nanopub — Public Fediverse posts

Today-I-have-done:

- first login to the cluster I should work and teach on
- installed #Snakemake and the #SLURM plugin, both using #pixi Noticed that I need to amend the docs for this.
- installed the #Nanopub reporter plugin, too.
- merged a couple of dependency PRs (those are auto-generated) for the Nanopub plugin.
- Finished the onboarding part for the course which I intend to give. There still is no release.
- saw a notice from the Snakemake announcement bot account (https://fediscience.org/@snakemake/117037142309030490 ) and remembered, that I wanted to get rid of the serif font. Needs some tinkering. So, not this fix will not be there too soon, I'm afraid. @johanneskoester this is not forgotten!

Something, I have not done, but Johannes, is to set up the Fediwall for Snakemake (see https://snakemake.github.io/fediwall/ ) - for which I need to include the announcement robot, too.

(This series of posts is not a thread of posts - otherwise all Snakemake related stuff would not show up on the Fediwall.)

3/n

Today:

- written a blurb for my presentation at the upcoming #nanopub session
- release the #SLURM executor plugin for #Snakemake v2.7.0 - see https://fediscience.org/@snakemake/116617420491776431
- tried to mitigate the issue that TMOUT on an HPC login brings: sending SIGHUB to all detached multiplexers (so far no remedy and I tried a lot(!), don't send me tips).
- futile further debugging attempts. In the end it worked. Might result in a new release next week.

#academicchatter

Finally, some personal progress: Thanks to @fbartusch a bug of the #SLURM executor plugin for Snakemake was fixed (dealing with nested quoting). A release is upcoming.

And: I generated my first (still faulty) test #nanopub from Snakemake 🥳

#SnakemakeHackathon2026