#phenomics — Public Fediverse posts

"Minimal information standardization of phenomic experimental data in animals" https://doi.org/10.37044/osf.io/ncrkm_v1

"The current landscape of animal phenomics is characterized by a substantial lack of stan-dardization, hindering data reuse, reproducibility, and interoperability across studies, all ofwhich are particularly important in light of the 3Rs principles for animal experiments (replace, reduce, refine) (Hubrecht & Carter, 2019). Within ELIXIR, the Domestic Animals Genome andPhenome Focus Group (since December 2025 an ELIXIR community) emerged to establishstandardized practices that enhance the quality and interoperability of animal research data" http://index.biohackrxiv.org/2026/04/10/ncrkm.html

#phenomics #3r #biohackathon #BioHackEU25

"Minimal information standardization of phenomic experimental data in animals" https://doi.org/10.37044/osf.io/ncrkm_v1

"The current landscape of animal phenomics is characterized by a substantial lack of stan-dardization, hindering data reuse, reproducibility, and interoperability across studies, all ofwhich are particularly important in light of the 3Rs principles for animal experiments (replace, reduce, refine) (Hubrecht & Carter, 2019). Within ELIXIR, the Domestic Animals Genome andPhenome Focus Group (since December 2025 an ELIXIR community) emerged to establishstandardized practices that enhance the quality and interoperability of animal research data" http://index.biohackrxiv.org/2026/04/10/ncrkm.html

#phenomics #3r #biohackathon #BioHackEU25

📢 Call for Papers: Metabolome-Microbiome in Health and Diseases for One Health

⏳ Submission Deadline: 31 May 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/metabolome-microbiome-health-diseases

#CallForPapers #Metabolomics #Microbiome #SystemsBiology #OneHealth #DiseaseBiology #MedicalInformatics #Phenomics

📢 Call for Papers: Metabolome-Microbiome in Health and Diseases for One Health

⏳ Submission Deadline: 31 May 2026

🔗 Submit your work: https://spj.science.org/journal/csbj/si/metabolome-microbiome-health-diseases

#CallForPapers #Metabolomics #Microbiome #SystemsBiology #OneHealth #DiseaseBiology #MedicalInformatics #Phenomics

🦠 Are microbes evolving faster than our ability to industrialize them?

🔗 Exploring Genome-Wide Mutation Dynamics and Bacterial Cellulose Impairment in Komagataeibacter intermedius Cultivated Under Agitation Stress. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0009

📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj

#SyntheticBiology #Sustainability #Biomaterials #Microbiology #IndustrialBiotechnology #MetabolicEngineering #Genomics #Phenomics

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

🆕Interview: In the accompanying blog post, the first author, Di Li, tell us about her and talks about the internal and external morphology of 𝑂𝑜𝑐𝑒𝑟𝑎𝑒𝑎 𝑏𝑖𝑟𝑜𝑖.
#phenomics #anatomy #MicroCT #3D #reconstruction

https://blog.myrmecologicalnews.org/2025/06/12/what-can-larval-morphology-teach-us-about-ant-evolution-and-development/

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

Phenotype microarray (Microbiology 🦠)

The phenotype microarray approach is a technology for high-throughput phenotyping of cells. A phenotype microarray system enables one to monitor simultaneously the phenotypic reaction of cells to environmental challenges or exogenous compounds in a high-throughput manner. The phenotypic reactions are recorded as either end-point measurements or ...

https://en.wikipedia.org/wiki/Phenotype_microarray

#PhenotypeMicroarray #Phenomics #Physiology #Microbiology

Interested in selecting for environmental response?
Wheat phenology and environmental responses have been affected by breeders selections since 1970. High-throughput field phenotyping methods reveal these developments, allowing to better adapt future varieties to climate change. Read more in the Journal of Experimental Botany https://doi.org/10.1093/jxb/erad481
#wheat #phenomics #physiological_breeding #temperature #climatechange #breeding

@askennard

In this preprint, we identified a conserved or suspiciously structurally similar interface between a large highly conserved well-folded protein and its fast-evolving co-factors in yeast and humans. Some co-factors are large, but all of them consist primarily of disordered regions.

https://www.biorxiv.org/content/10.1101/2023.08.24.554671v2

We are now using alpha fold to predict protein-protein interactions amongst proteins that are linked to these ones via phenomics.

#StructurePredictions #Phenomics #alphafold

Hey There! #introduction. My lab group uses genetics/genomics approaches to understand eco-evolutionary processes acting on natural populations within their environmental context. #speciation, #adaptation, #Evolution, #GlobalChangeBio, #InvasiveSpecies, #PopulationGenetics, #FollowForPopGenBack, #demography, #AdaptiveRadiation, #FunctionalGenomics, #epigenetics, #phenomics, #Anolis, #herpetology, #biodiversity, #museumomics, #microbiomes, #biogeography

#Multispectral #imaging unlocks #genetic secrets of #Phedimus plants for rooftop gardening.

#phenomics #QTL

https://phys.org/news/2023-12-multispectral-imaging-genetic-secrets-phedimus.html

#Multispectral #imaging unlocks #genetic secrets of #Phedimus plants for rooftop gardening.

#phenomics #QTL

https://phys.org/news/2023-12-multispectral-imaging-genetic-secrets-phedimus.html

An artificial intelligence method for rapid #plant #phenotyping under complex conditions.

#AI #photosynthesis #chlorphyll #ChlF #phenomics

https://phys.org/news/2023-04-artificial-intelligence-method-rapid-phenotyping.html

@askennard

In this preprint, we identified a conserved or suspiciously structurally similar interface between a large highly conserved well-folded protein and its fast-evolving co-factors in yeast and humans. Some co-factors are large, but all of them consist primarily of disordered regions.

https://www.biorxiv.org/content/10.1101/2023.08.24.554671v2

We are now using alpha fold to predict protein-protein interactions amongst proteins that are linked to these ones via phenomics.

#StructurePredictions #Phenomics #alphafold

@askennard

In this preprint, we identified a conserved or suspiciously structurally similar interface between a large highly conserved well-folded protein and its fast-evolving co-factors in yeast and humans. Some co-factors are large, but all of them consist primarily of disordered regions.

https://www.biorxiv.org/content/10.1101/2023.08.24.554671v2

We are now using alpha fold to predict protein-protein interactions amongst proteins that are linked to these ones via phenomics.

#StructurePredictions #Phenomics #alphafold

@askennard

In this preprint, we identified a conserved or suspiciously structurally similar interface between a large highly conserved well-folded protein and its fast-evolving co-factors in yeast and humans. Some co-factors are large, but all of them consist primarily of disordered regions.

https://www.biorxiv.org/content/10.1101/2023.08.24.554671v2

We are now using alpha fold to predict protein-protein interactions amongst proteins that are linked to these ones via phenomics.

#StructurePredictions #Phenomics #alphafold

@askennard

In this preprint, we identified a conserved or suspiciously structurally similar interface between a large highly conserved well-folded protein and its fast-evolving co-factors in yeast and humans. Some of the co-factors are large, but all of them consist primarily of disordered regions.

https://www.biorxiv.org/content/10.1101/2023.08.24.554671v2

We are now using alpha fold to predict protein-protein interactions amongst proteins that are linked to these ones via phenomics.

#StructurePredictions #Phenomics

Hey There! #introduction. My lab group uses genetics/genomics approaches to understand eco-evolutionary processes acting on natural populations within their environmental context. #speciation, #adaptation, #Evolution, #GlobalChangeBio, #InvasiveSpecies, #PopulationGenetics, #FollowForPopGenBack, #demography, #AdaptiveRadiation, #FunctionalGenomics, #epigenetics, #phenomics, #Anolis, #herpetology, #biodiversity, #museumomics, #microbiomes, #biogeography

Hey There! #introduction. My lab group uses genetics/genomics approaches to understand eco-evolutionary processes acting on natural populations within their environmental context. #speciation, #adaptation, #Evolution, #GlobalChangeBio, #InvasiveSpecies, #PopulationGenetics, #FollowForPopGenBack, #demography, #AdaptiveRadiation, #FunctionalGenomics, #epigenetics, #phenomics, #Anolis, #herpetology, #biodiversity, #museumomics, #microbiomes, #biogeography

Hey There! #introduction. My lab group uses genetics/genomics approaches to understand eco-evolutionary processes acting on natural populations within their environmental context. #speciation, #adaptation, #Evolution, #GlobalChangeBio, #InvasiveSpecies, #PopulationGenetics, #FollowForPopGenBack, #demography, #AdaptiveRadiation, #FunctionalGenomics, #epigenetics, #phenomics, #Anolis, #herpetology, #biodiversity, #museumomics, #microbiomes, #biogeography