#phenotyping — Public Fediverse posts

🧹 Introducing CleanEX — a free, browser-based tool for cleaning and exploring Dualex leaf optical data. No installation, no server: everything runs locally via WebR, so your data never leaves your device. 🔒

The raw Dualex .txt export isn’t analysis-ready out of the box — null bytes, comment blocks, terse column names, and group numbers with no treatment labels. CleanEX handles all of it, lets you assign treatments per group, export to wide or long format, and generate exploratory bar charts (mean ± SE, 300 dpi PNG) for Chl, Flav, Anth and NBI.

👉 https://www.mauromaver.eu/posts/rebelot/cleanex_eng/

#PlantScience #PlantPhysiology #OpenScience #Phenotyping #Rstats #WebR #academia #Research

New blog post 🧹 — why I built CleanRhizo.

WinRhizo measures roots well but leaves the organizing to you. CleanRhizo is a free, browser-based tool that decodes treatment names from sample IDs, cleans the raw output, and exports it ready for analysis — wide/long CSV plus bar charts (mean ± SE) at 300 dpi. No install, no server: runs locally via WebR.

→ https://www.mauromaver.eu/posts/rebelot/cleanrhizo_eng/

#PlantScience #RootBiology #Phenotyping #OpenScience #WebR #Rstats

🌱 Introducing CleanRhizo — a free, browser-based tool for cleaning and exploring root morphology data exported from WinRhizo (Regent Instruments).

No installation, no server, no data upload: everything runs locally in your browser via WebR, so your files never leave your device. 🔒

🔧 What it does:
• Reads raw WinRhizo .txt files and lets you select which columns to keep
• Automatically decodes treatment names from sample IDs, including multi-level experimental designs (biological × technical replicates: pot + plant)
• Supports underscore, dot, and space as separators — or lets you assign roles manually for non-standard naming
• Exports to wide or long format (ready for R or other downstream tools)
• Generates exploratory bar charts (mean ± SE) with optional individual data points (jitter), downloadable as 300 dpi PNG

Available in EN 🇬🇧 IT 🇮🇹 ES 🇪🇸 FR 🇫🇷

➡️ https://www.mauromaver.eu/CleanRhizo/CleanRhizo.html

#PlantScience #RootBiology #OpenScience #Phenotyping #PlantPhysiology #Rstats #WebR #WinRhizo #Research

Beyond yes-or-no napping: researchers argue for multidimensional sleep phenotyping

https://1ban.news/napping-multidimensional-phenotyping-garaulet-2026/
#1ban #napping #multidimensional #phenotyping #garaulet #sleep

You want to learn how a light-induced fluorescence transient (LIFT) photosynthesis sensor on an autonomous field robot can contribute to a more efficient selection of resilient and high-yielding crop genotypes, but you don't like to read our paper? Then go check out the video on https://dx.doi.org/10.3791/69530-v 📹 🌱 🤖 #photosynthesis #phenotyping #robot #agriculturalrobotics

Improving the photosynthetic efficiency of crop plants has the potential to sustainably increase yields up to three-fold. However, conventional breeding for increased photosynthetic efficiency is tedious and slow due to a lack of reliable and high-throughput methods to assess crop photosynthetic efficiency in the field. In our most recent paper, we present a method to change this by mounting a light-induced fluorescence transient (LIFT) photosynthesis sensor onto an autonomous field robot. Check it out:

https://dx.doi.org/10.3791/69530

#photosynthesis #LIFT #phenotyping #robot #agriculturalrobotics 🔬 🌱

The group of Crop Science runs the new sensor configuration of the FIP (https://kp.ethz.ch/infrastructure/FIP.html) which enables the generation of highly resolved point clouds. See more examples under: https://kp.ethz.ch/infrastructure/FIP/Preliminary_visualizations_of_FIP_2data.html 🌱 📸 #field #phenotyping #image-to-3d

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3609

High-throughput plant phenotyping 
State University of Campinas (UNICAMP)

See the full job description on jobRxiv: https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/

#drones #phenomics #phenotyping #plantbiology #plantbreeding #plantgenetics #plantphysiology #satellite #ScienceJobs #hiring #research
https://jobrxiv.org/job/state-university-of-campinas-unicamp-27778-high-throughput-plant-phenotyping/?fsp_sid=3322

📍 Séminaire de Lautaro GANDARA #EMBL 📍

📅Vendredi 19 septembre 2025 à 12 h à l'IDEEV

▶️Deep #phenotyping in #ecotoxicology: from the #insect apocalypse to the stress response"

▶️ https://www.ideev.universite-paris-saclay.fr/seminaires/

@EMBLEvents #xenobiotic #drosophila #biodiversite #ecologie #lautarogandara

!!! NEW DATASET !!!

The Field Phenotyping Platform (FIP) 1.0 dataset is now available - a massive open dataset for winter #wheat research combining imaging, trait, environmental & genetic data!

📊 What's included:

- 4,000+ wheat plots across 6 years
- 153,000+ high-resolution aligned images
- 8 key traits: canopy cover, plant height, head counts, senescence, heading date, yield & protein content
- Genetic markers + environmental data
- Time-series format perfect for modeling

🎯 What it can be used for:

- #CropModeling & phenotyping method development
- Genotype-environment interaction studies
- Growth dynamics analysis
- #MachineLearning applications in agriculture
- Genomic prediction research

This comprehensive resource bridges #PlantScience and #AI communities, accelerating research in climate-adaptive agriculture 🌱

Open access paper: https://doi.org/10.1093/gigascience/giaf051

#OpenScience #Agriculture #DataScience #ClimateChange #CropImprovement #Phenotyping #OpenData