#phylogeny — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #phylogeny, aggregated by home.social.
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Deyi Wang et al. revealed that the #EctomycorrhizalFungal communities in alpine pine forests are shaped jointly by evolutionary history and environmental filtering at the regional scale on the #Qinghai_TibetanPlateau.
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at the risk of competing with #ClamFacts, check out the latest Skype A Scientist merch: a T-shirt full of SHRIMP (& friends) FACTS :shromp:
edit: fuck me forgot theurl https://squidfacts.bigcartel.com/product/shrimp-city-t-shirt-pre-order
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at the risk of competing with #ClamFacts, check out the latest Skype A Scientist merch: a T-shirt full of SHRIMP (& friends) FACTS :shromp:
edit: fuck me forgot theurl https://squidfacts.bigcartel.com/product/shrimp-city-t-shirt-pre-order
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at the risk of competing with #ClamFacts, check out the latest Skype A Scientist merch: a T-shirt full of SHRIMP (& friends) FACTS :shromp:
edit: fuck me forgot theurl https://squidfacts.bigcartel.com/product/shrimp-city-t-shirt-pre-order
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at the risk of competing with #ClamFacts, check out the latest Skype A Scientist merch: a T-shirt full of SHRIMP (& friends) FACTS :shromp:
edit: fuck me forgot theurl https://squidfacts.bigcartel.com/product/shrimp-city-t-shirt-pre-order
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I've written up some notes on the Open Tree of Life viewer iphylo.blogspot.com/2026/05/a-ne... which explain a little about how it works, and cites the papers that influenced the design. The browser itself is at iphylo.org/ott-viewer #treeoflife #blogpost #phylogeny
A new way to view the Tree of ... -
I've written up some notes on the Open Tree of Life viewer iphylo.blogspot.com/2026/05/a-ne... which explain a little about how it works, and cites the papers that influenced the design. The browser itself is at iphylo.org/ott-viewer #treeoflife #blogpost #phylogeny
A new way to view the Tree of ... -
Didelot et al. present the R package DiagnoDating for diagnosing issues in a reconstructed dated phylogeny, including outlier detection, posterior predictive checking and residual analysis.
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Didelot et al. present the R package DiagnoDating for diagnosing issues in a reconstructed dated phylogeny, including outlier detection, posterior predictive checking and residual analysis.
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Didelot et al. present the R package DiagnoDating for diagnosing issues in a reconstructed dated phylogeny, including outlier detection, posterior predictive checking and residual analysis.
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Didelot et al. present the R package DiagnoDating for diagnosing issues in a reconstructed dated phylogeny, including outlier detection, posterior predictive checking and residual analysis.
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Didelot et al. present the R package DiagnoDating for diagnosing issues in a reconstructed dated phylogeny, including outlier detection, posterior predictive checking and residual analysis.
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Latest displacement activity is playing with an idea for showing the Open Tree of Life opentreeoflife.github.io using summary trees and animated transitions (with some help from Claude Code and OpenAI) #opentreeoflife #phylogeny
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A major #update to my #collection of #morphological #matrices worthy to infer #networks:
a bunch of matrices we generated and reanalysed for a paper by S. Renner, D. Sokoloff, and me dealing with ancestors, hard polytomies and seed plant evolution; depicted not as the usual cladograms (where ancestor-descendant pairs must trigger unsolvable hard trichotomies) but as a "Romerogram" (or spindle graph) that shows #dichotomy as well as #buddingEvolution, i.e., #phylogeny -
A major #update to my #collection of #morphological #matrices worthy to infer #networks:
a bunch of matrices we generated and reanalysed for a paper by S. Renner, D. Sokoloff, and me dealing with ancestors, hard polytomies and seed plant evolution; depicted not as the usual cladograms (where ancestor-descendant pairs must trigger unsolvable hard trichotomies) but as a "Romerogram" (or spindle graph) that shows #dichotomy as well as #buddingEvolution, i.e., #phylogeny -
A major #update to my #collection of #morphological #matrices worthy to infer #networks:
a bunch of matrices we generated and reanalysed for a paper by S. Renner, D. Sokoloff, and me dealing with ancestors, hard polytomies and seed plant evolution; depicted not as the usual cladograms (where ancestor-descendant pairs must trigger unsolvable hard trichotomies) but as a "Romerogram" (or spindle graph) that shows #dichotomy as well as #buddingEvolution, i.e., #phylogeny -
A major #update to my #collection of #morphological #matrices worthy to infer #networks:
a bunch of matrices we generated and reanalysed for a paper by S. Renner, D. Sokoloff, and me dealing with ancestors, hard polytomies and seed plant evolution; depicted not as the usual cladograms (where ancestor-descendant pairs must trigger unsolvable hard trichotomies) but as a "Romerogram" (or spindle graph) that shows #dichotomy as well as #buddingEvolution, i.e., #phylogeny -
A major #update to my #collection of #morphological #matrices worthy to infer #networks:
a bunch of matrices we generated and reanalysed for a paper by S. Renner, D. Sokoloff, and me dealing with ancestors, hard polytomies and seed plant evolution; depicted not as the usual cladograms (where ancestor-descendant pairs must trigger unsolvable hard trichotomies) but as a "Romerogram" (or spindle graph) that shows #dichotomy as well as #buddingEvolution, i.e., #phylogeny -
#PhylogeneticConservatism sustains stable associations across #Pinaceae genera (#Ectomycorrhiza), while environmental filtering drives species-specific community differentiation at local scales on the #Qinghai_TibetanPlateau.
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Single-blind #PeerReview strikes again. Reviewer revealing himself to the coauthors of a paper 1 week after submission threatening to reject it, unless he becomes a coauthor.
Now they are negotiating a deal to avoid having to redo everything.
Wondering also, why a method-focussed paper (new approach) submitted to a journal dedicated to molecular #phylogeny is reviewed by somebody who knows the organism but has very little experience in (phylo)genetics
Have to love single blind.
#FightTheFog -
Single-blind #PeerReview strikes again. Reviewer revealing himself to the coauthors of a paper 1 week after submission threatening to reject it, unless he becomes a coauthor.
Now they are negotiating a deal to avoid having to redo everything.
Wondering also, why a method-focussed paper (new approach) submitted to a journal dedicated to molecular #phylogeny is reviewed by somebody who knows the organism but has very little experience in (phylo)genetics
Have to love single blind.
#FightTheFog -
Single-blind #PeerReview strikes again. Reviewer revealing himself to the coauthors of a paper 1 week after submission threatening to reject it, unless he becomes a coauthor.
Now they are negotiating a deal to avoid having to redo everything.
Wondering also, why a method-focussed paper (new approach) submitted to a journal dedicated to molecular #phylogeny is reviewed by somebody who knows the organism but has very little experience in (phylo)genetics
Have to love single blind.
#FightTheFog -
Single-blind #PeerReview strikes again. Reviewer revealing himself to the coauthors of a paper 1 week after submission threatening to reject it, unless he becomes a coauthor.
Now they are negotiating a deal to avoid having to redo everything.
Wondering also, why a method-focussed paper (new approach) submitted to a journal dedicated to molecular #phylogeny is reviewed by somebody who knows the organism but has very little experience in (phylo)genetics
Have to love single blind.
#FightTheFog -
Single-blind #PeerReview strikes again. Reviewer revealing himself to the coauthors of a paper 1 week after submission threatening to reject it, unless he becomes a coauthor.
Now they are negotiating a deal to avoid having to redo everything.
Wondering also, why a method-focussed paper (new approach) submitted to a journal dedicated to molecular #phylogeny is reviewed by somebody who knows the organism but has very little experience in (phylo)genetics
Have to love single blind.
#FightTheFog -
So much for strict #OpenData policies. Paper published in 2021 in New Phytologist, data matrix: "... is accessible to readers in #Morphobank, project # 3917. We have enabled anonymous login."
https://www.morphobank.org/myprojects/3917/overview
Anonymous login works (first pic), "Project disc usage: 0 bytes". Which happens to be exactly the number of linked matrices under the project (2nd pic)
Deleted the data after review? Avoid anyone else can (mis)use it.
#paleobotany #phylogeny #FightTheFog #transparency in #science
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So much for strict #OpenData policies. Paper published in 2021 in New Phytologist, data matrix: "... is accessible to readers in #Morphobank, project # 3917. We have enabled anonymous login."
https://www.morphobank.org/myprojects/3917/overview
Anonymous login works (first pic), "Project disc usage: 0 bytes". Which happens to be exactly the number of linked matrices under the project (2nd pic)
Deleted the data after review? Avoid anyone else can (mis)use it.
#paleobotany #phylogeny #FightTheFog #transparency in #science
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So much for strict #OpenData policies. Paper published in 2021 in New Phytologist, data matrix: "... is accessible to readers in #Morphobank, project # 3917. We have enabled anonymous login."
https://www.morphobank.org/myprojects/3917/overview
Anonymous login works (first pic), "Project disc usage: 0 bytes". Which happens to be exactly the number of linked matrices under the project (2nd pic)
Deleted the data after review? Avoid anyone else can (mis)use it.
#paleobotany #phylogeny #FightTheFog #transparency in #science
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So much for strict #OpenData policies. Paper published in 2021 in New Phytologist, data matrix: "... is accessible to readers in #Morphobank, project # 3917. We have enabled anonymous login."
https://www.morphobank.org/myprojects/3917/overview
Anonymous login works (first pic), "Project disc usage: 0 bytes". Which happens to be exactly the number of linked matrices under the project (2nd pic)
Deleted the data after review? Avoid anyone else can (mis)use it.
#paleobotany #phylogeny #FightTheFog #transparency in #science
-
So much for strict #OpenData policies. Paper published in 2021 in New Phytologist, data matrix: "... is accessible to readers in #Morphobank, project # 3917. We have enabled anonymous login."
https://www.morphobank.org/myprojects/3917/overview
Anonymous login works (first pic), "Project disc usage: 0 bytes". Which happens to be exactly the number of linked matrices under the project (2nd pic)
Deleted the data after review? Avoid anyone else can (mis)use it.
#paleobotany #phylogeny #FightTheFog #transparency in #science
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Ok I'd actually love to hear people's take on this one. Vigorous skepticism about inferred trees (based on alignments) that eventually also require manual adjustment, and what that means for phylogeny is a curiously often encountered conversation for me these days.
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Ok I'd actually love to hear people's take on this one. Vigorous skepticism about inferred trees (based on alignments) that eventually also require manual adjustment, and what that means for phylogeny is a curiously often encountered conversation for me these days.
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Ok I'd actually love to hear people's take on this one. Vigorous skepticism about inferred trees (based on alignments) that eventually also require manual adjustment, and what that means for phylogeny is a curiously often encountered conversation for me these days.
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Ok I'd actually love to hear people's take on this one. Vigorous skepticism about inferred trees (based on alignments) that eventually also require manual adjustment, and what that means for phylogeny is a curiously often encountered conversation for me these days.
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Genetic landscape of Borrelia burgdorferi sensu stricto in Canada: a study of genetic diversity https://www.byteseu.com/1557505/ #AccessoryGenome #Canada #Clonality #ComputationalBiologyAndBioinformatics #CoreGenome #Diseases #evolution #Genetics #HumanitiesAndSocialSciences #microbiology #Modularity #multidisciplinary #Phylogeny #Science
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Zhang et al. present NeuralNJ, an accurate and efficient approach to phylogenetic inference whose innovation lies in its learnable neighbor joining mechanism, which iteratively joins neighbors guided by learned priority scores for tree reconstruction.
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Zhang et al. present NeuralNJ, an accurate and efficient approach to phylogenetic inference whose innovation lies in its learnable neighbor joining mechanism, which iteratively joins neighbors guided by learned priority scores for tree reconstruction.
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Zhang et al. present NeuralNJ, an accurate and efficient approach to phylogenetic inference whose innovation lies in its learnable neighbor joining mechanism, which iteratively joins neighbors guided by learned priority scores for tree reconstruction.
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Zhang et al. present NeuralNJ, an accurate and efficient approach to phylogenetic inference whose innovation lies in its learnable neighbor joining mechanism, which iteratively joins neighbors guided by learned priority scores for tree reconstruction.
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Zhang et al. present NeuralNJ, an accurate and efficient approach to phylogenetic inference whose innovation lies in its learnable neighbor joining mechanism, which iteratively joins neighbors guided by learned priority scores for tree reconstruction.
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#Sponges are back at the root of the animal tree! I knew the cnidarians-as-root hypothesis was just too hard justify given the sum total of evidence.
https://www.science.org/doi/10.1126/science.adw9456 -
#Sponges are back at the root of the animal tree! I knew the cnidarians-as-root hypothesis was just too hard justify given the sum total of evidence.
https://www.science.org/doi/10.1126/science.adw9456 -
#Sponges are back at the root of the animal tree! I knew the cnidarians-as-root hypothesis was just too hard justify given the sum total of evidence.
https://www.science.org/doi/10.1126/science.adw9456 -
#Sponges are back at the root of the animal tree! I knew the cnidarians-as-root hypothesis was just too hard justify given the sum total of evidence.
https://www.science.org/doi/10.1126/science.adw9456 -
#Sponges are back at the root of the animal tree! I knew the cnidarians-as-root hypothesis was just too hard justify given the sum total of evidence.
https://www.science.org/doi/10.1126/science.adw9456 -
200 isn't really a #milestone (wouldn't that be 1000?), but not a bad number of reads for a #preprint of a paper deemed not fit for publication.
https://www.researchgate.net/profile/Guido-Grimm/achievement/691574d72d8b361441dbb9bb
Currently processing the data to please the editor (more P.R.Chinese samples), nothing unexpected came up but all analyses will have to be updated and streamlined.
So enjoy the original, the final product will have more tips but not more content 😅
#Fagus #beech #phylogeny -
200 isn't really a #milestone (wouldn't that be 1000?), but not a bad number of reads for a #preprint of a paper deemed not fit for publication.
https://www.researchgate.net/profile/Guido-Grimm/achievement/691574d72d8b361441dbb9bb
Currently processing the data to please the editor (more P.R.Chinese samples), nothing unexpected came up but all analyses will have to be updated and streamlined.
So enjoy the original, the final product will have more tips but not more content 😅
#Fagus #beech #phylogeny -
200 isn't really a #milestone (wouldn't that be 1000?), but not a bad number of reads for a #preprint of a paper deemed not fit for publication.
https://www.researchgate.net/profile/Guido-Grimm/achievement/691574d72d8b361441dbb9bb
Currently processing the data to please the editor (more P.R.Chinese samples), nothing unexpected came up but all analyses will have to be updated and streamlined.
So enjoy the original, the final product will have more tips but not more content 😅
#Fagus #beech #phylogeny -
200 isn't really a #milestone (wouldn't that be 1000?), but not a bad number of reads for a #preprint of a paper deemed not fit for publication.
https://www.researchgate.net/profile/Guido-Grimm/achievement/691574d72d8b361441dbb9bb
Currently processing the data to please the editor (more P.R.Chinese samples), nothing unexpected came up but all analyses will have to be updated and streamlined.
So enjoy the original, the final product will have more tips but not more content 😅
#Fagus #beech #phylogeny -
200 isn't really a #milestone (wouldn't that be 1000?), but not a bad number of reads for a #preprint of a paper deemed not fit for publication.
https://www.researchgate.net/profile/Guido-Grimm/achievement/691574d72d8b361441dbb9bb
Currently processing the data to please the editor (more P.R.Chinese samples), nothing unexpected came up but all analyses will have to be updated and streamlined.
So enjoy the original, the final product will have more tips but not more content 😅
#Fagus #beech #phylogeny -
Isolation and genetic characterization of parvovirus from Bengal tiger in China | Virology Journal
Luo S, Liu Y, Xu X. Tigers of the world: genomics and conservation. Annu Rev Anim Biosci. 2019;7:521–48.…
#NewsBeep #News #Health #AU #Australia #BengalTiger #CPV #ISOLATION #Mutation #PCR #Phylogeny #Virology #VP2
https://www.newsbeep.com/au/202924/