#metabarcoding — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #metabarcoding, aggregated by home.social.
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Field work seems to be over for now in our #BEN_EAF outgoing mobility project in the #Cairngorms, #Scotland.
We did sample soil for #eDNA #metabarcoding and collected our pitfall traps.
It was a great and quite warm weather! 😎
Next: do some invertebrate identification in the labs of the #JamesHuttonInstitute .
#AlpSoil_Lab #Highlands #ScottishHighlands #SoilFauna #SoilBiodiversity #MountainSoilBiodiversity
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Field work seems to be over for now in our #BEN_EAF outgoing mobility project in the #Cairngorms, #Scotland.
We did sample soil for #eDNA #metabarcoding and collected our pitfall traps.
It was a great and quite warm weather! 😎
Next: do some invertebrate identification in the labs of the #JamesHuttonInstitute .
#AlpSoil_Lab #Highlands #ScottishHighlands #SoilFauna #SoilBiodiversity #MountainSoilBiodiversity
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.17.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.16.1 - Ampliseq release 2.16.1 2026-01-23!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.1#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.16.0 - Ampliseq Version 2.16.0!
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.16.0#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #metataxonomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Our new @[email protected] paper on Advancing ecological #assessment: towards the integration of #eDNA #metabarcoding into an estuarine #fish index is out. #Research #MarineEcology #GES4SEAS Free download here: authors.elsevier.com/sd/article/S...
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Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.15.0 - Ampliseq Version 2.15.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.15.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!
Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0
#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/detaxizer v1.2.0 - detaxizer 1.2.0 - Kunschd!
Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.2.0
#deidentification #decontamination #edna #fastq #filter #longreads #metabarcoding #metagenomics #microbiome #nanopore #shortreads #shotgun #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.14.0 - Ampliseq Version 2.14.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.14.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Pipeline release! nf-core/ampliseq v2.13.0 - Ampliseq Version 2.13.0!
Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.13.0
#16s #18s #ampliconsequencing #edna #illumina #iontorrent #its #metabarcoding #metagenomics #microbiome #pacbio #qiime2 #rrna #taxonomicclassification #taxonomicprofiling #nfcore #openscience #nextflow #bioinformatics
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Researchers partner with #IndigenousKnowledge holders to protect threatened great desert skink Tjakuṟa https://phys.org/news/2025-01-partner-indigenous-knowledge-holders-threatened.html
#Metabarcoding clarifies the diet of the elusive and vulnerable Australian #tjakura (Great Desert #Skink, Liopholis kintorei) https://www.frontiersin.org/journals/ecology-and-evolution/articles/10.3389/fevo.2024.1354138/full
"Tjakuṟa is a large #lizard that lives in multi-tunneled communal burrows in #Australia... scientists rely on #Aṉangu Traditional Knowledge to locate Tjakuṟa burrows, estimate burrow occupancy, identify predator tracks"
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Pleased to see this published (and open access) - I’ve been contributing to this #ForestResearch / #HuttonInstitute led project for over 5 years (with most of the co-authors even longer):
Green et al (2025) The prevalence of Phytophthora in British plant nurseries; high-risk hosts and substrates and opportunities to implement best practice https://doi.org/10.1111/ppa.14044
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Took a while, but my largest ever upload of data to the #ENA / #SRA is live, nearly 4000 #metabarcoding amplicon sequencing runs using a #Phytophthora ITS1 marker: https://www.ebi.ac.uk/ena/browser/view/PRJEB76241
Managing sequencing #metadata is hard!