#deeplabcut — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #deeplabcut, aggregated by home.social.
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I spent the day manually labeling frames for #DeepLabCut ( #MachineLearning model to track #animals in videos).
Incredibly mind-numbing, but hopefully my new model will be good enough to work through the terabytes of videos.
If the model can actually track up to 18 piglets, that would be amazing!
#AcademicChatter #AnimalBehavior #AnimalBehaviour -
From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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@choldgraf visited the #deeplabcut team @TrackingActions 's lab, EPFL, in early August to learn how they used open-source tools to share work. Learn how a @mystmarkdown mini-hackathon facilitated learning and accelerated contributions to the project https://2i2c.org/blog/2024/deeplabcut-myst-hackathon/ 📖
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Seen on the #NeuroMethods slack:
Any suggestions for algorithms to track pupil in mice? (Not #DeepLabCut )
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Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.I'll try to be around during most breaks!
If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!
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Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.I'll try to be around during most breaks!
If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!
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Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.I'll try to be around during most breaks!
If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!
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Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.I'll try to be around during most breaks!
If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!
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Good morning #ISOT2024!
Today's the last poster session of the meeting @[email protected], so come and stop by to chat.I'll try to be around during most breaks!
If you're interested in #DeepLabCut (or #MoSeq), definitely come and chat!
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I have added a hands-on #tutorial to the Assessing Animal Behavior lecture. The tutorial covers the GUI-based use of #DeepLabCut 💻, a software package for markerless pose estimation of animals 🐭🔍 It’s aimed at #neuroscience students with no or little programming knowledge. Feel free to share it with your students and colleagues ☺️
🌍 https://www.fabriziomusacchio.com/teaching/teaching_assessing_animal_behavior/05_deeplabcut
#Ethology #MachineLearning #behaviourscience #BehavioralScience #animalbehavior
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New this week @Nature, Mackenzie and Alexander Mathis (@TrackingActions) were still early in their careers when their #DeepLabCut software created a sensation. Now they’re using it to support other young scientists. 🧪 https://www.nature.com/articles/d41586-024-01474-x
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Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?
You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.
It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.
Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movementIt’s still in early development 🏗️ but we appreciate feedback/feature requests.
Check out the detailed thread on our team’s mastodon account: @neuroinformatics
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Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?
You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.
It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.
Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movementIt’s still in early development 🏗️ but we appreciate feedback/feature requests.
Check out the detailed thread on our team’s mastodon account: @neuroinformatics
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Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?
You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.
It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.
Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movementIt’s still in early development 🏗️ but we appreciate feedback/feature requests.
Check out the detailed thread on our team’s mastodon account: @neuroinformatics
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Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?
You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.
It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.
Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movementIt’s still in early development 🏗️ but we appreciate feedback/feature requests.
Check out the detailed thread on our team’s mastodon account: @neuroinformatics
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Anyone here working on #PoseEstimation #animalbehavior #neuroethology ?
You may be interested in the free and open-source Python 🐍 package I’m currently working on, together with @adamltyson @bd_peri and others.
It’s called movement, and it’s made for analysing the pose tracks produced by pose estimation frameworks, like #DeepLabCut and #SLEAP.
Website: https://movement.neuroinformatics.dev
GitHub: https://github.com/neuroinformatics-unit/movementIt’s still in early development 🏗️ but we appreciate feedback/feature requests.
Check out the detailed thread on our team’s mastodon account: @neuroinformatics
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Well, it's time again: I'm officially looking for a new #PostDoc
Please share far and wide!
My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.
For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign! -
Well, it's time again: I'm officially looking for a new #PostDoc
Please share far and wide!
My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.
For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign! -
Well, it's time again: I'm officially looking for a new #PostDoc
Please share far and wide!
My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.
For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign! -
Well, it's time again: I'm officially looking for a new #PostDoc
Please share far and wide!
My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.
For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign! -
Well, it's time again: I'm officially looking for a new #PostDoc
Please share far and wide!
My expertise lies in behavioral ecology, focused on mammalian chemical communication. I've also been exploring #DeepLabCut & #MoSeq for automated behavior analysis.
For more info about my research & background, visit my newly revamped website https://tsievert.com/
Shout-out to my friend Ramin at websplash GmbH for the fantastic redesign! -
We recently made our lab's handbook for #DeepLabCut public!
It's not finished yet and quite rough on the edges, but you can watch us (well, me) struggle in the process of trying to establish #DeepLabCut in our lab.The handbook also includes #HowTo.s and scripts to run everything on a HPC cluster.
Long-term aim is to also include guides and scripts for #KeypointMoseq.
Check it out at https://github.com/LassanceLab/DLC_handbook
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@egonw Thanks a lot for the advice! I guess my license needs to follow the original #DeepLabCut license, right? In this case GNU Lesser General Public License v3.0.
And thanks for reminding me about the CITATION.cff, I'll get right on it. -
I need some feedback from more experienced #OpenData #OpenScience folks.
My lab is trying to be as open as possible, so we just published our progress making a #DeepLabCut model (including all annotated frames).
Please let me know if the README is missing anything crucial or if I missed any other best practices.
https://github.com/LassanceLab/primary_DeepLabCut_model -
@kevinbolding Good question, but I'm not 100% sure myself.
I'm new to the neuro world, so bear with me.
We are trying to identify which receptors, pathways, and brain areas are activated upon contact with the odor.
This is then combined with behavioral observations using #DeepLabCut
At least that's the plan. We've encountered a bunch of (administrative) roadblocks, so I can't really give a more sophisticated answer. -
@TrackingActions Would you be interested in additional data for the #SuperAnimal TopViewMouse-5k model?
We're just getting started with #DeepLabCut and will work on two Peromyscus species (plus wild Mus musculus and maybe Apodemus) -
@TrackingActions Would you be interested in additional data for the #SuperAnimal TopViewMouse-5k model?
We're just getting started with #DeepLabCut and will work on two Peromyscus species (plus wild Mus musculus and maybe Apodemus) -
@TrackingActions Would you be interested in additional data for the #SuperAnimal TopViewMouse-5k model?
We're just getting started with #DeepLabCut and will work on two Peromyscus species (plus wild Mus musculus and maybe Apodemus) -
@TrackingActions Would you be interested in additional data for the #SuperAnimal TopViewMouse-5k model?
We're just getting started with #DeepLabCut and will work on two Peromyscus species (plus wild Mus musculus and maybe Apodemus) -
@TrackingActions Would you be interested in additional data for the #SuperAnimal TopViewMouse-5k model?
We're just getting started with #DeepLabCut and will work on two Peromyscus species (plus wild Mus musculus and maybe Apodemus) -
Just in case you thought #ImageAnalysis was all about cells
https://forum.image.sc/t/is-facial-recognition-of-racoons-possible-with-deeplabcut/76826/2?u=dnmason
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Does anybody have experience with #DeepLabCut and a workflow including #GoogleCollab?
I'm looking at the documentation and feeling a bit lost.Super extra plus points if you have used a pre-trained #ModelZoo and annotated extra frames for better performance.
@ecologies #AnimalBehavior #AnimalBehaviour #ComputerVision @academicchatter -
Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
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Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
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Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
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Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
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Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
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Any #DLC #DeepLabCut users moved across to Mastodon yet? #MachineLearning or #behaviour #behavior are a bit too broad for me
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Using the amazing #DeepLabCut we were able to track every movement of all relevant anatomical landmarks of the mouse in 3D, without even marking the joints beforehand (with an accuracy of nearly 100%).
We determined considerable changes in e.g., footfall patterns, angular variations, reduced movement of the joints, as well as changes in protraction and retraction with none, partial recovery or full recovery
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Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
#java #python #kotlin #groovy -
Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
#java #python #kotlin #groovy -
Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
#java #python #kotlin #groovy -
Have you discovered the image processing forum yet? https://forum.image.sc
Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
#java #python #kotlin #groovy -
#nvidia #deeplabcut #b3d
I was making a test to show that we could use audio2face + deeplabcut to drive our animations.I had just 1h to do this, so it is far from perfect.
On first loop its only audio2face, on second loop is audio2face and deeplabcut.
Carlos Barreto
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Hello everyone.
Today I was doing some tests on Deeplabcut Live (https://github.com/DeepLabCut/DeepLabCut-live)This package let you run the created model done in #deeplabcut (https://github.com/DeepLabCut/DeepLabCut) to do some prediction on new footage.
Very interesting..
Carlos Barreto
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Back on tests, creating a face model, and using the model to create the face mocap in blender
BTW. Its amazing the work done by @DeepLabCut . you should check it
http://www.mackenziemathislab.org/deeplabcut
Carlos Barreto