#bioimageanalysis — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #bioimageanalysis, aggregated by home.social.
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🧠📐 Kaltenecker et al present #MouseMapper, that combines whole-body tissue clearing, #lightsheet #imaging and foundation-model-based #DeepLearning to quantify nerves, immune cells & 31 organs/tissues across entire #mouse bodies.
Applied to diet-induced #obesity, it revealed reduced nerve density, infraorbital trigeminal nerve defects, impaired whisker sensing, & body-wide inflammatory CD68⁺ immune-cell clustering.
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🧠📐 Kaltenecker et al present #MouseMapper, that combines whole-body tissue clearing, #lightsheet #imaging and foundation-model-based #DeepLearning to quantify nerves, immune cells & 31 organs/tissues across entire #mouse bodies.
Applied to diet-induced #obesity, it revealed reduced nerve density, infraorbital trigeminal nerve defects, impaired whisker sensing, & body-wide inflammatory CD68⁺ immune-cell clustering.
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🧠📐 Kaltenecker et al present #MouseMapper, that combines whole-body tissue clearing, #lightsheet #imaging and foundation-model-based #DeepLearning to quantify nerves, immune cells & 31 organs/tissues across entire #mouse bodies.
Applied to diet-induced #obesity, it revealed reduced nerve density, infraorbital trigeminal nerve defects, impaired whisker sensing, & body-wide inflammatory CD68⁺ immune-cell clustering.
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🧠📐 Kaltenecker et al present #MouseMapper, that combines whole-body tissue clearing, #lightsheet #imaging and foundation-model-based #DeepLearning to quantify nerves, immune cells & 31 organs/tissues across entire #mouse bodies.
Applied to diet-induced #obesity, it revealed reduced nerve density, infraorbital trigeminal nerve defects, impaired whisker sensing, & body-wide inflammatory CD68⁺ immune-cell clustering.
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🧠📐 Kaltenecker et al present #MouseMapper, that combines whole-body tissue clearing, #lightsheet #imaging and foundation-model-based #DeepLearning to quantify nerves, immune cells & 31 organs/tissues across entire #mouse bodies.
Applied to diet-induced #obesity, it revealed reduced nerve density, infraorbital trigeminal nerve defects, impaired whisker sensing, & body-wide inflammatory CD68⁺ immune-cell clustering.
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🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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11/ 🔬🧪 Try it today! pip install napari-chatgpt — GitHub: github.com/royerlab/napari-chatgpt — Paper: doi.org/10.1038/s41592-024-02310-w #Omega #napari #AI #BioImageAnalysis
GitHub - royerlab/napari-chatg... -
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
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Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
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Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
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Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
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Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
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#bioimageanalysis wouldn't be the same without all the great RSEs who make our tools and keep them working! Great paper on this from a couple of years ago linked below - if there's a tool that makes your life easier, think about taking a few minutes today to thank the person or people who make it!
RE: https://bsky.app/profile/did:plc:okkgjibnf4hzx2b7k2avhznm/post/3m2qli6skfb2x
Frontiers | Better research so... -
#bioimageanalysis wouldn't be the same without all the great RSEs who make our tools and keep them working! Great paper on this from a couple of years ago linked below - if there's a tool that makes your life easier, think about taking a few minutes today to thank the person or people who make it!
RE: https://bsky.app/profile/did:plc:okkgjibnf4hzx2b7k2avhznm/post/3m2qli6skfb2x
Frontiers | Better research so... -
If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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If you would like to attend a microscopy or bioimage analysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @J_Cell_Sci and @focalplane_jcs.
Next deadline: 6 June 2025
https://www.biologists.com/grants/jcs-focalplane-training-grants/
#Microscopy #BioimageAnalysis #Bioimage #Biology #Training #Grants
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BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
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BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...
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If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)
Ask Erin, Dear Beth -
Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)
Ask Erin, Dear Beth -
If, hypothetically, a person were trying to set up a career panel series for bioimage analysis, what kinds of roles (or specific people) would you want to hear more about? Hypothetical nominations of all stripes welcome :) #bioimageanalysis
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If, hypothetically, a person were trying to set up a career panel series for bioimage analysis, what kinds of roles (or specific people) would you want to hear more about? Hypothetical nominations of all stripes welcome :) #bioimageanalysis
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 – 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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We're once again hiring a summer (+?) #bioimage #bioimageanalysis #software intern! Due to requirements of the funding program, you must be a current student, as well as work onsite in MA (+ have US work permission). Details at the link below. Spend your summer making great tools with fun people!
Software engineering intern - ... -
We're once again hiring a summer (+?) #bioimage #bioimageanalysis #software intern! Due to requirements of the funding program, you must be a current student, as well as work onsite in MA (+ have US work permission). Details at the link below. Spend your summer making great tools with fun people!
Software engineering intern - ... -
Nice shout-out to #opensource #microscopy and #imageanalysis #bioimageanalysis software at #CZIImaging #ImagingTheFuture.
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Nice shout-out to #opensource #microscopy and #imageanalysis #bioimageanalysis software at #CZIImaging #ImagingTheFuture.
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Need a 5-15 minute break from doomscrolling? (You know you do!) Take 5 minutes and tell us how to make #bioimageanalysis #imageanalysis better!
RE: https://bsky.app/profile/did:plc:o7tynxmyxsuhoeknkm7r2dul/post/3l6z5bxyc7o25