#bioimageanalysis β Public Fediverse posts
Live and recent posts from across the Fediverse tagged #bioimageanalysis, aggregated by home.social.
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1/ π Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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11/ π¬π§ͺ Try it today! pip install napari-chatgpt β GitHub: github.com/royerlab/napari-chatgpt β Paper: doi.org/10.1038/s41592-024-02310-w #Omega #napari #AI #BioImageAnalysis
GitHub - royerlab/napari-chatg... -
If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis ... -
Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
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Workshop on True Image Deconvolution, Restoration, and Analysis
When: March 13th, 2025 β 3 days from now.
2 hours long: 14:30 - 16:30 CET
Where: online, via zoom.
Program: https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis
Registration: https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis
#BioimageAnalysis #PSF #deconvolution #ImageProcessing #microscopy
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Nice shout-out to #opensource #microscopy and #imageanalysis #bioimageanalysis software at #CZIImaging #ImagingTheFuture.
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This 3D image stack deconvolution tool looks super useful for #bioimageanalysis
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images
Wernersson et al., Nature Methods 2024
https://doi.org/10.1038/s41592-024-02294-7Github: https://github.com/elgw/deconwolf/
Program: https://deconwolf.fht.org/ -
It's #MuscleMonday (?!) and as someone who does #BioimageAnalysis in #DigitalPathology these days, I always like to see #SiriusRed stains.
The yellow/red contrast makes the job so much easier!
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Here is an example of using #RandomForests π³π³ for #PixelClassification πΌοΈ in #Python π, using @napari for labeling βοΈ
π https://www.fabriziomusacchio.com/blog/2023-06-23-_random_forests_pixel_classifier/
#RandomForest #Napari #MachineLearning #ImageProcessing #Bioimage #BioimageAnalysis
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There's a great #JobOpportunity in #BioImageAnalysis at Edinburgh uni, who are looking for an #ImagingScientist to support their new #Fluorescence #Multiplex capabilities.
#ImageAnalysis #Jobs #Akoya #Visiopharm #Phenocycler #Phenotyping
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Just in case you thought #ImageAnalysis was all about cells
https://forum.image.sc/t/is-facial-recognition-of-racoons-possible-with-deeplabcut/76826/2?u=dnmason
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Echoing a post from a colleague:
*Four* job opportunities in Pete Bankhead's research group @EdinUni_IGC
to work on #QuPathhttps://forum.image.sc/t/four-positions-in-the-qupath-team-research-software-engineer-postdoc/73705
Focus on developing #opensource software & #ai tools for #bioimageanalysis - making complex analysis easier/better/possible