#napari — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #napari, aggregated by home.social.
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🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @[email protected] from my team! #napari #bioimageanalysis #MCP @biohub
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🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
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🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
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🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
-
🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
-
🔬 Registration is open for our pilot Introduction to napari Workshop!
napari is a powerful open-source image viewer for scientific data analysis in Python. This hands-on workshop will get you exploring multi-dimensional datasets fast.
✅ Only $20 USD
✅ Limited to 20 people
✅ Perfect for biologists, imaging specialists & data scientistsTwo workshops at two different times.
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.
Dates: June 1st-5th, 2026.
Deadline for application: March 1st, 2026.
With two tracks:
* ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.
* ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.
https://www.pasteur.fr/en/education/programs-and-courses/pasteur-courses?id_cours=32719
#ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate
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11/ 🔬🧪 Try it today! pip install napari-chatgpt — GitHub: github.com/royerlab/napari-chatgpt — Paper: doi.org/10.1038/s41592-024-02310-w #Omega #napari #AI #BioImageAnalysis
GitHub - royerlab/napari-chatg... -
Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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Adventures in Code VII: getting started with napari
https://quantixed.org/2025/11/04/adventures-in-code-vii-getting-started-with-napari/
#AdventuresInCode #computing #code #microscopy #napari #python
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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From @nvladimus : "We have opened the #mesoSPIM official User Forum" at https://forum.image.sc/tag/mesospim alongside #Fiji #ImageJ #ilastik #BiaPy #napari #DeepLabCut and many other open source softwares for bioimage informatics.
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To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
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To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
-
To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
-
To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
-
To wrap this up: Both tools are easy to test. I highly recommend trying them on your own data to see what works best for your use case.
I’ll include #CellSeg3D in our next #Napari #bioimage analysis course (https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/). Curious what impressions and feedback the students will share. 🧪🔍
What I really like about @napari is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for (bio) #imageanalysis! 👌
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✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
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✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
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✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
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✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
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✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.
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Image analysts: What is your go to method for batch converting image files from the proprietary format to a tiff file? If this should be done at all...
I’ve been using FIJI to open and re-save mine. Although this gives me another look at the image as a QC step, I am using Napari more and more and have found a tiff easier to load into Python.
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We manage to introduce a pipeline mixing spatialdata, #scPRINT #HEST1K #CONCH #SPATIALDATA and #NAPARI. Our first POC was STsimilarity: finding similar image patches across a large database of histopatologic slides.
2/6 -
Glad to join the Crick Bioimage Analysis Symposium for the second time (first in person!). Looking forward to two days of cool science, analyses, and technologies! @thecrick
#CBIAS2024 #ImageAnalysis #Bioinformatics #napari #pathology #pathomics
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Glad to join the Crick Bioimage Analysis Symposium for the second time (first in person!). Looking forward to two days of cool science, analyses, and technologies! @thecrick
#CBIAS2024 #ImageAnalysis #Bioinformatics #napari #pathology #pathomics
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Glad to join the Crick Bioimage Analysis Symposium for the second time (first in person!). Looking forward to two days of cool science, analyses, and technologies! @thecrick
#CBIAS2024 #ImageAnalysis #Bioinformatics #napari #pathology #pathomics
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Glad to join the Crick Bioimage Analysis Symposium for the second time (first in person!). Looking forward to two days of cool science, analyses, and technologies! @thecrick
#CBIAS2024 #ImageAnalysis #Bioinformatics #napari #pathology #pathomics
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#OpenSIMMO: A fully-automated #OpenSource multicolour structured illumination module for #SuperResolution #microscopy:
-#fluorescence #microscope add-on
-#RasPi/#ESP32 controlPreprint: https://doi.org/10.1101/2024.07.04.601961
Web: https://opensimmo.github.io/
#DIYbio #lab #instruments #SIM #imaging #laser #optics #Napari #Python #ImSwitch #DMD #OpenUC2 -
#OpenSIMMO: A fully-automated #OpenSource multicolour structured illumination module for #SuperResolution #microscopy:
-#fluorescence #microscope add-on
-#RasPi/#ESP32 controlPreprint: https://doi.org/10.1101/2024.07.04.601961
Web: https://opensimmo.github.io/
#DIYbio #lab #instruments #SIM #imaging #laser #optics #Napari #Python #ImSwitch #DMD #OpenUC2 -
#OpenSIMMO: A fully-automated #OpenSource multicolour structured illumination module for #SuperResolution #microscopy:
-#fluorescence #microscope add-on
-#RasPi/#ESP32 controlPreprint: https://doi.org/10.1101/2024.07.04.601961
Web: https://opensimmo.github.io/
#DIYbio #lab #instruments #SIM #imaging #laser #optics #Napari #Python #ImSwitch #DMD #OpenUC2