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#napari — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #napari, aggregated by home.social.

  1. We are happy to announce the "NL-BioImaging Advanced Image Analysis course for biologists", 21–24 September at Erasmus MC in Rotterdam.

    More info and register here:
    courses.microscopie.nl/?event_

    Four hands-on days going from segmentation to full pipelines:
    - Automate reproducible image processing with Jupyter notebooks
    - Assess classical and AI approaches for specific challenges
    - Train and optimise deep learning models on biological datasets
    - Document and publish reproducible image analysis pipelines

    Guidance from experts across the Netherlands.
    Limited to 20 participants.

    Feel free to tag colleagues or share this with your network!

    #bioimaging #imageanalysis #course #openscience
    #cellpose #OMERO #Jupyter #napari #FAIRdata
    NL-Bioimaging #NVvM

  2. Napari (Napal) (Navarra)
    Escalada
    montanaregulada.org/area/napar

    Consulta las regulaciones actualizadas que afectan a las zonas de montaña en España.
    #Escalada #montañaRegulada #Napari(Napal)

  3. For large microscopy datasets (e.g. >1 GB): #OMIO can materialize images directly as disk-backed #Zarr stores. This allows #MemoryMapped, slice-wise access w/o loading the entire dataset into RAM. And: It fully integrates with #Napari workflows ✌️

    🧵4/8

  4. For large microscopy datasets (e.g. >1 GB): #OMIO can materialize images directly as disk-backed #Zarr stores. This allows #MemoryMapped, slice-wise access w/o loading the entire dataset into RAM. And: It fully integrates with #Napari workflows ✌️

    🧵4/8

  5. Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

    Dates: June 1st-5th, 2026.

    Deadline for application: March 1st, 2026.

    With two tracks:

    * ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

    * ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

    pasteur.fr/en/education/progra

    #ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

  6. Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

    Dates: June 1st-5th, 2026.

    Deadline for application: March 1st, 2026.

    With two tracks:

    * ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

    * ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

    pasteur.fr/en/education/progra

    #ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

  7. Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

    Dates: June 1st-5th, 2026.

    Deadline for application: March 1st, 2026.

    With two tracks:

    * ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

    * ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

    pasteur.fr/en/education/progra

    #ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

  8. Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

    Dates: June 1st-5th, 2026.

    Deadline for application: March 1st, 2026.

    With two tracks:

    * ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

    * ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

    pasteur.fr/en/education/progra

    #ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

  9. Bioimage Analysis course at Pasteur in Paris, by Jean-Yves Tinevez and Jean-christophe Olivo-Marin.

    Dates: June 1st-5th, 2026.

    Deadline for application: March 1st, 2026.

    With two tracks:

    * ‘early career investigators track’: aims at mastering the most recent and common image analysis software tools.

    * ‘analysts track’: focuses on the use of advanced algorithms and computing resources for bioimage analysis.

    pasteur.fr/en/education/progra

    #ImageProcessing #BioimageInformatics #Fiji #Icy #QuPath #Napari #Ilastik #TrackMate

  10. ✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.

    🌍 elifesciences.org/articles/998

    #DeepLearning #Neuroscience

  11. ✍️ New in #eLife: #CellSeg3D introduces #WNet3D, a self-supervised 3D #segmentation method for #microscopy data — no labels needed. Claims to outperform #Cellpose/#StarDist on 4 datasets. Includes #opensource plugin (#Napari) + full 3D annotated #cortex dataset. Will test it later.

    🌍 elifesciences.org/articles/998

    #DeepLearning #Neuroscience

  12. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

    #java #python #kotlin #groovy

  13. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

    #java #python #kotlin #groovy

  14. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

    #java #python #kotlin #groovy

  15. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

    #java #python #kotlin #groovy

  16. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.

    #java #python #kotlin #groovy

  17. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
    #java #python #kotlin #groovy

  18. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
    #java #python #kotlin #groovy

  19. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
    #java #python #kotlin #groovy

  20. Have you discovered the image processing forum yet? forum.image.sc

    Featuring tutorials, requests for guidance, help, discussion of new features and documentation for open source software #FijiSc #ImageJ #CellProfiler #DeepLabCut #Icy #ilastik #napari #QuPath #scikitimage #StarDist and many more.
    #java #python #kotlin #groovy