Search
1000 results for “sanjay_ankur”
-
The latest release of #PyNeuroML, 1.3.9, includes `pynml-swc2nml` for conversion of #SWC neuronal morphologies to #NeuroML. Also accessible via the API:
Install it using pip:
https://pypi.org/project/pyNeuroML/1.3.9/
#NeuroML #ComputationalNeuroscience #NeuronalModelling #FAIR #Neuroscience #AcademicChatter
-
The latest release of #PyNeuroML, 1.3.9, includes `pynml-swc2nml` for conversion of #SWC neuronal morphologies to #NeuroML. Also accessible via the API:
Install it using pip:
https://pypi.org/project/pyNeuroML/1.3.9/
#NeuroML #ComputationalNeuroscience #NeuronalModelling #FAIR #Neuroscience #AcademicChatter
-
The latest release of #PyNeuroML, 1.3.9, includes `pynml-swc2nml` for conversion of #SWC neuronal morphologies to #NeuroML. Also accessible via the API:
Install it using pip:
https://pypi.org/project/pyNeuroML/1.3.9/
#NeuroML #ComputationalNeuroscience #NeuronalModelling #FAIR #Neuroscience #AcademicChatter
-
FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the #OpenSourceBrain platforms. More information on the status page here:
https://status.opensourcebrain.org/
#OpenScience #Neuroscience #Neuroinformatics #NetPyNE #NWBExplorer
CC: @sdurabernal
-
FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the #OpenSourceBrain platforms. More information on the status page here:
https://status.opensourcebrain.org/
#OpenScience #Neuroscience #Neuroinformatics #NetPyNE #NWBExplorer
CC: @sdurabernal
-
FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the #OpenSourceBrain platforms. More information on the status page here:
https://status.opensourcebrain.org/
#OpenScience #Neuroscience #Neuroinformatics #NetPyNE #NWBExplorer
CC: @sdurabernal
-
FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the #OpenSourceBrain platforms. More information on the status page here:
https://status.opensourcebrain.org/
#OpenScience #Neuroscience #Neuroinformatics #NetPyNE #NWBExplorer
CC: @sdurabernal
-
RT @INCForg on birdsite:
Applications are open for
#NeurodataWithoutBorders 's #NeuroDataReHack 2023.
Thanks to sponsorship from
#KavliFoundation, this event is free for participants!NeuroDataReHack 2023
📅 Sep 5-8
📍Granada, SpainApply here by May 1: http://bit.ly/NWBsNDRH2023
-
We're *also* looking for candidates to work with us at #GSoC2023 on the conversion of published neuroscience data into the #NeurodataWithoutBorders standard format. Please spread the word, and get in touch!
-
@gabrock94 I think either would do as long as it's well commented. The advantage with Jupyter notebooks is that one can use Binder/Google Collab etc. to run them without requiring a local setup.
We're also developing a new version of #OpenSourceBrain where one can keep their data + code and use a full #JupyterLab environment on our cloud instance:
https://v2.opensourcebrain.org
(Under heavy development, still Beta!)
-
The #INCF #OCNS Software WG software highlight is starting in ~20 minutes (1600UTC) !
Michalis Pagkalos will discuss #Dendrify, a framework for incorporating dendrites to spiking neural networks
https://ocns.github.io/SoftwareWG/2023/01/27/dev-session-michalis-pagkalos-dendrify.html
#OpenScience #Neuroscience #ComputationalNeuroscience #Dendrites
-
Please join the #INCF #OCNS Software WG at our next software highlight session on Feb 7 at 1600 UTC. Michalis Pagkalos will discuss #Dendrify, a framework for incorporating dendrites to spiking neural networks https://ocns.github.io/SoftwareWG/2023/01/27/dev-session-michalis-pagkalos-dendrify.html #OpenScience #Neuroscience #ComputationalNeuroscience #Dendrites
-
#NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x
-
#NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x
-
#NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x
-
A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x
-
A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x
-
A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x
-
Please join the @INCF + @OCNS Software Working group on 9th July for our next meeting.
Adam Tyson from the Sainsbury Wellcome Centre will talk about the software tools their group develops for systems neuroscience:
#Software #FOSS #Neuroscience #SystemsNeuroscience #UCL #SWC
-
PSA @fedora folks, to use #Discourse (#AskFedora and #FedoraDiscussion) on your #QTWebEngine based browsers like #Qutebrowser and #Falkon, pass `enable-experimental-web-platform-features` in the `qt.args` (for Qutebrowser, not sure what it is for Falkon):
-
Please join us at the next session of the INCF/OCNS Software WG: Pierre Yger will present #SpikeInterface: 14 May 2024 at 1500 UTC. More info:
https://ocns.github.io/SoftwareWG/2024/05/07/wg-meeting-14-may-2024-spikeinterface-pierre-yger-.html
-
Logs from the open #INCF #OCNS #SoftwareWG meeting in March are here https://ocns.github.io/SoftwareWG/2023/03/20/wg-meeting-15-march-2023.html #OpenScience #Community #FOSS #Neuroscience #ComputationalNeuroscience
-
The zoom session has now begun. Please join at your convenience:
https://ucl.zoom.us/j/99321986413?pwd=OUdFTlJ3NVloUmJ1U0Q3WE9vRERMZz09
-
Please join the #INCF #OCNS Software working group for our software highlight session today (28 February) at 1600 UTC: Kay Robbins will introduce and discuss #HED (Hierarchical Event Descriptors)
More information (and Zoom link) in the announcement:
https://ocns.github.io/SoftwareWG/2023/02/17/software-highlight-kay-robbins-hed.html
-
Logs from the monthly open #INCF #OCNS Software Working Group meeting in January are now here:
https://ocns.github.io/SoftwareWG/2023/02/01/wg-meeting-16-january-2023.html
#Neuroscience #OpenScience #CompNeuro #ComputationalNeuroscience
-
Please fill in (and share!) this #INCF survey on #DataSharing barriers in #neuroscience
https://www.incf.org/blog/global-survey-data-sharing-barriers-neuroscience
-
Please boost:
Please join us for the next open #NeuroML editorial team meeting on March 30 at 1600 UTC:
More information (and meeting link) in the agenda document here:
-
Please boost:
RT @INCForg on birdsite:
📢Call for workshops: #INCF Neuroinformatics Assembly 2023📢
Have a great workshop idea? Let us know! Our theme: Transparency in #FAIR #Neuroinformatics.
Submit ideas here by March 24: http://bit.ly/CallForAssembly23WSs
See ideas we'd like to see represented here: http://bit.ly/INCFAssembly23WSideas
-
Join a December 2023 Fedora Docs workshop!
https://communityblog.fedoraproject.org/december-2023-docs-workshop/