#netpyne — Public Fediverse posts

Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.

#NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x

A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

Our SBP Committee has endorsed 3 new standards!
- SPARC Data Structure
- NetPyNE
- SWC

We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

Learn more: https://www.incf.org/blog/incf-endorsement-new-standards-best-practices

#neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

Our SBP Committee has endorsed 3 new standards!
- SPARC Data Structure
- NetPyNE
- SWC

We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

Learn more: https://www.incf.org/blog/incf-endorsement-new-standards-best-practices

#neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

⚠️ Last chance: Review period ends today ⚠️

📢 Community review requested: NetPyNE

NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

Used this standard? Review it here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

⚠️ Last chance: Review period ends today ⚠️

📢 Community review requested: NetPyNE

NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

Used this standard? Review it here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

⚠️ Last chance: Review period ends today ⚠️

📢 Community review requested: NetPyNE

NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

Used this standard? Review it here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

📢Community review requested: NetPyNE📢

NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

⚠️ The review period ends TOMORROW - Fri Feb 09!

Used this standard? Review it here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

📢Community review requested: NetPyNE📢

NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

⚠️ The review period ends Fri Feb 09!

Used this standard? Review it here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

We need your feedback on NetPyNE!

NetPyNE is an open-source Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

Have you used this standard? What do you like? What would you change? Share your thoughts here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

We need your feedback on NetPyNE!

NetPyNE is an open-source Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

Have you used this standard? What do you like? What would you change? Share your thoughts here: https://www.incf.org/commentaries/call-community-review-netpyne

#neuroscience #OpenScience #OpenData #FAIR #NetPyNE

FYI folks, the Open Source Brain cluster is being upgraded and migrated, so you may experience transient issues on the #OpenSourceBrain platforms. More information on the status page here:

https://status.opensourcebrain.org/

#OpenScience #Neuroscience #Neuroinformatics #NetPyNE #NWBExplorer

CC: @sdurabernal