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#netpyne — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #netpyne, aggregated by home.social.

  1. Generated a quick plot to see usage trends for Open Source Brain v2 (): an integrated platform for that indexes multiple model and data sources (, , , ) and provides compute resources on the in "workspaces". It also includes specialist applications: for working with data in the NeuroData Without Borders () format; -UI for biophysically detailed and a environment.

  2. Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.

  3. Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.

  4. Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.

  5. Generated a quick plot to see usage trends for Open Source Brain v2 (#OSBv2): an integrated #research platform for #neuroscience that indexes multiple model and data sources (#DANDI, #ModelDB, #Biomodels, #Github) and provides compute resources on the #cloud in "workspaces". It also includes specialist applications: #NWBExplorer for working with data in the NeuroData Without Borders (#NWB) format; #NetPyNE-UI for biophysically detailed #ComputationalModelling and a #JupyterLab environment.

  6. supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (, , , , , ), validating (pyNeuroML, , ), visualising (pyNeuroML, , -DB), simulating (, , , , , , ), model fitting/optimisation (, , NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, .org). 7/x

  7. #NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x

  8. #NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x

  9. #NeuroML supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (#pyNeuroML, #neuroConstruct, #NEURON, #NetPyNE, #PyNN, #N2A), validating (pyNeuroML, #OMV, #SciUnit), visualising (pyNeuroML, #OSB, #NeuroML-DB), simulating (#NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN), model fitting/optimisation (#NeuroTune, #BluePyOpt, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, #NeuroMorpho.org). 7/x

  10. A number of software tools are available for construction and simulation of models: , , , , , , etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

  11. A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

  12. A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

  13. A number of software tools are available for construction and simulation of models: #NEURON, #NetPyNE, #Brian, #PyNN, #NEST, #MOOSE, #EDEN etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x

  14. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  15. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  16. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  17. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  18. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  19. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  20. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  21. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  22. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  23. Our SBP Committee has endorsed 3 new standards!
    - SPARC Data Structure
    - NetPyNE
    - SWC

    We're sure these standards will provide clear, effective, & robust solutions to neuroscientists' investigative & analytical needs 🧠💻

    Learn more: incf.org/blog/incf-endorsement

    #neuroscience #neuroinformatics #FAIR #OpenScience #OpenNeuro #SPARC #NetPyNE #SWC

  24. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  25. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  26. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  27. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  28. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  29. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  30. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  31. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  32. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  33. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  34. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  35. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  36. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  37. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  38. ⚠️ Last chance: Review period ends today ⚠️

    📢 Community review requested: NetPyNE

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  39. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends TOMORROW - Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  40. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends TOMORROW - Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  41. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends TOMORROW - Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  42. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends TOMORROW - Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  43. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends TOMORROW - Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  44. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  45. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  46. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  47. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  48. 📢Community review requested: NetPyNE📢

    NetPyNE is an open-source #Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    ⚠️ The review period ends Fri Feb 09!

    Used this standard? Review it here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  49. We need your feedback on NetPyNE!

    NetPyNE is an open-source Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Have you used this standard? What do you like? What would you change? Share your thoughts here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE

  50. We need your feedback on NetPyNE!

    NetPyNE is an open-source Python package designed for the development, simulation, & analysis of biological neuronal networks 🧠

    Have you used this standard? What do you like? What would you change? Share your thoughts here: incf.org/commentaries/call-com

    #neuroscience #OpenScience #OpenData #FAIR #NetPyNE