#spikeinterface — Public Fediverse posts

Are you interested in the spiking activity of your neuronal cultures, #brain slices, #organoids, etc.?

Check out our latest publication in STAR Protocols:
“Protocol for the enhanced analysis of electrophysiological data from high-density multi-electrode arrays with nicespike and spikeNburst”
https://doi.org/10.1016/j.xpro.2025.104195

It provides user-friendly graphical and #Python programming interfaces to spike sorting via template matching thanks to #Kilosort and #spikeinterface (@spikeinterface), and subsequent analysis of #spiking and #bursting activity, networks, and synchrony.

#neuroscience #brainscience #electrophysiology #brainOrganoids

Please join us at the next session of the INCF/OCNS Software WG: Pierre Yger will present #SpikeInterface: 14 May 2024 at 1500 UTC. More info:

https://ocns.github.io/SoftwareWG/2024/05/07/wg-meeting-14-may-2024-spikeinterface-pierre-yger-.html

#INCF #OCNS #Neuroscience @spikeinterface

#SpikeSorting question:
Say I would like to use #Klustakwick (3) - I have the .exe of it - with #SpikeInterface , to pre-sort my spikes. But it is not implemented in the available “sorters”.
“Klusta” is, which seems somewhat similar (made by the same people?) but also quite different. I really like Klustakwick and would just like to try that.
Any ideas?
Where is the best place to ask questions about SpikeInterface? I feel like opening an Issue on the GitHub is a bit overkill… 🙏​

Hi, is anyone using #Mountainsort with #Neuralynx data? Are you using #SpikeInterface to convert the input data? Would you share your code? 😃​🙏​
#SpikeSorting