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#samtools — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #samtools, aggregated by home.social.

  1. SMT @[email protected] ·

    #kmers #Bioinformatics #Ancestry #lowpass Dependencies: #RStats #Perl #samtools #GenomeTester4

    RE: https://bsky.app/profile/did:plc:ppvxhapnptcy5v6cih3ynmzg/post/3lwenu5d2pb2d

    #kmers #bioinformatics #ancestry #lowpass #rstats #perl
  2. Leszek @[email protected] ·

    @kaasbaas #wikipedia (English language) is only ~22GB of #bzip2 compressed #xml (uncompressed size is ~86GB).
    is it possible to access it without decompression? I guess #random #access to .xml.bz2 should be a solved problem, right?
    we're routinely using gzip with random access in #bioinformatics ie via #samtools or #tabix

    EDIT:
    Wikipedia xml.bz2 does support random access for multistream version. does @kiwix or any other wiki reader support it? I couldn't find info on their website...

    #xml #wikipedia #bzip2 #random #access #bioinformatics
  3. MultiQC @[email protected] ·

    Just out: @multiqc v1.25.2 🎉

    This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛

    There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update!

    github.com/MultiQC/MultiQC/rel

    #bcl2fastq #ngsbits #picard #nanostat #samtools
  4. Pierre Lindenbaum @[email protected] ·

    The PR for samtools (visualize CNVs in the #terminal ) was merged today ! #samtools #cnv #sv #structuralvariant #ascii github.com/samtools/samtools/p

    #terminal #samtools #cnv #sv #structuralvariant #ascii
  5. Pierre Lindenbaum @[email protected] ·

    asked #biostars "htslib/c what is the correct way to use bgzf_thread_pool ?" #C #samtools #htskib #fastq biostars.org/p/9551841/

    #biostars #c #samtools #htskib #fastq
  6. Pierre Lindenbaum @[email protected] ·

    asked #biostars "htslib/c what is the correct way to use bgzf_thread_pool ?" #C #samtools #htskib #fastq biostars.org/p/9551841/

    #biostars #c #samtools #htskib #fastq
  7. Pierre Lindenbaum @[email protected] ·

    asked #biostars "htslib/c what is the correct way to use bgzf_thread_pool ?" #C #samtools #htskib #fastq biostars.org/p/9551841/

    #biostars #c #samtools #htskib #fastq
  8. Pierre Lindenbaum @[email protected] ·

    asked #biostars "htslib/c what is the correct way to use bgzf_thread_pool ?" #C #samtools #htskib #fastq biostars.org/p/9551841/

    #fastq #htskib #samtools #c #biostars
  9. Pierre Lindenbaum @[email protected] ·

    asked #biostars "htslib/c what is the correct way to use bgzf_thread_pool ?" #C #samtools #htskib #fastq biostars.org/p/9551841/

    #biostars #c #samtools #htskib #fastq