#htsjdk — Public Fediverse posts

htsjdk 5.0.0 https://github.com/samtools/htsjdk/releases/tag/5.0.0

#java #bioinformatics #htsjdk

RE: https://genomic.social/@yokofakun/115740891523944578

https://github.com/samtools/htsjdk/discussions/1760#discussioncomment-16384234

> HTSJDK has not been the most actively maintained project for a long time, and with many departures from Broad in the last couple of years, it's not clear to me who still has an active interest in helping maintain the project.

#java #htsjdk #samtools

RE: https://genomic.social/@yokofakun/115740891523944578

https://github.com/samtools/htsjdk/discussions/1760#discussioncomment-16384234

> HTSJDK has not been the most actively maintained project for a long time, and with many departures from Broad in the last couple of years, it's not clear to me who still has an active interest in helping maintain the project.

#java #htsjdk #samtools

RE: https://genomic.social/@yokofakun/115740891523944578

https://github.com/samtools/htsjdk/discussions/1760#discussioncomment-16384234

> HTSJDK has not been the most actively maintained project for a long time, and with many departures from Broad in the last couple of years, it's not clear to me who still has an active interest in helping maintain the project.

#java #htsjdk #samtools

RE: https://genomic.social/@yokofakun/115740891523944578

https://github.com/samtools/htsjdk/discussions/1760#discussioncomment-16384234

> HTSJDK has not been the most actively maintained project for a long time, and with many departures from Broad in the last couple of years, it's not clear to me who still has an active interest in helping maintain the project.

#java #htsjdk #samtools

RE: https://genomic.social/@yokofakun/115740891523944578

https://github.com/samtools/htsjdk/discussions/1760#discussioncomment-16384234

> HTSJDK has not been the most actively maintained project for a long time, and with many departures from Broad in the last couple of years, it's not clear to me who still has an active interest in helping maintain the project.

#java #htsjdk #samtools

PR for #htsjdk : https://github.com/samtools/htsjdk/pull/1751 "optimistic_vcf_4_x "

htsjdk pull request accepted https://github.com/samtools/htsjdk/pull/1726 🥳 #htsjdk #java #bioinformatics

Java API for high-throughput #sequencing data (#HTS) formats. version 4.0.0 released. "This is the first release to be built exclusively for #java 17." #htsjdk https://github.com/samtools/htsjdk/releases/tag/4.0.0

I submitted a first PR for #htsjdk to support the #gtf format : https://github.com/samtools/htsjdk/pull/1662

#java #htsjdk #bioinformatics #git

#htsjdk 3.0.5 released https://github.com/samtools/htsjdk/releases/tag/3.0.5

future releases of #htsjdk will target #Java 17 https://github.com/samtools/htsjdk/discussions/1656

#HTSJDK is an implementation of a unified #Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data. https://bit.ly/3U2qksu

#htsjdk 3.0.4 released https://github.com/samtools/htsjdk/releases/tag/3.0.4 #java #hts #api