#orthodb — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #orthodb, aggregated by home.social.
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#Orthologs of D. melanogaster genes in a variety of arthropods, including insects and other Drosophila species, are found in the Other Organism Orthologs (via OrthoDB) subsection of the Orthologs section of FlyBase Gene Reports.
We have worked with the #OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived orthologs shown in FlyBase.
@ensembl -
This release brings an update to #OrthoDB in FlyBase; we've worked with the OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived #orthologs shown in FlyBase.
We use OrthoDB for ortholog calls of Dmel genes in many organisms (other than those represented in the FlyBase implementation of DIOPT), including other Drosophila species & arthropods.
@ensembl #FlyBaseTootorial -
#SIB course:
"#Biodiversity #bioinformatics: from large-scale #phylogenomics to gene families and functions"
30.08-1.09 Lausanne #UNIL.
- key evolutionary concepts
- methodological approaches
- hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. #OrthoDB, #BUSCO, #OMA @bgeedb
Trainers: @rmwaterhouse, N Glover, C Dessimoz, & me https://www.sib.swiss/training/course/20230830_COMGE #MolecularEvolution #Genomics #training -
#SIB course:
"#Biodiversity #bioinformatics: from large-scale #phylogenomics to gene families and functions"
30.08-1.09 Lausanne #UNIL.
- key evolutionary concepts
- methodological approaches
- hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. #OrthoDB, #BUSCO, #OMA @bgeedb
Trainers: @rmwaterhouse, N Glover, C Dessimoz, & me https://www.sib.swiss/training/course/20230830_COMGE #MolecularEvolution #Genomics #training -
Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE -
Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE -
Orthologs, lots of #orthologs!
#OrthoDB: 17 551 bacteria, 607 archea, 1935 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac998/6814468
#EggNOG: 10 756 bacteria, 457 archaea, 1322 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac1022/6833261
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Orthologs, lots of #orthologs!
#OrthoDB: 17 551 bacteria, 607 archea, 1935 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac998/6814468
#EggNOG: 10 756 bacteria, 457 archaea, 1322 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac1022/6833261