#orthologs — Public Fediverse posts

🧬 Can we map the evolutionary history of plant genes through network analysis?

🔗 Hayai-Annotation: A functional gene prediction tool that integrates orthologs and gene ontology for network analysis in plant species. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.12.011

📚 CSBJ: https://www.csbj.org/

#PlantGenomics #GeneAnnotation #Bioinformatics #Orthologs #RShiny #GeneOntology #ComparativeGenomics #NetworkBiology #Genetics

#Orthologs of D. melanogaster genes in a variety of arthropods, including insects and other Drosophila species, are found in the Other Organism Orthologs (via OrthoDB) subsection of the Orthologs section of FlyBase Gene Reports.
We have worked with the #OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived orthologs shown in FlyBase.
@ensembl

This release brings an update to #OrthoDB in FlyBase; we've worked with the OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived #orthologs shown in FlyBase.
We use OrthoDB for ortholog calls of Dmel genes in many organisms (other than those represented in the FlyBase implementation of DIOPT), including other Drosophila species & arthropods.
@ensembl #FlyBaseTootorial

This release brings an update to #OrthoDB in FlyBase; we've worked with the OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived #orthologs shown in FlyBase.
We use OrthoDB for ortholog calls of Dmel genes in many organisms (other than those represented in the FlyBase implementation of DIOPT), including other Drosophila species & arthropods.
@ensembl #FlyBaseTootorial

This release brings an update to #OrthoDB in FlyBase; we've worked with the OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived #orthologs shown in FlyBase.
We use OrthoDB for ortholog calls of Dmel genes in many organisms (other than those represented in the FlyBase implementation of DIOPT), including other Drosophila species & arthropods.
@ensembl #FlyBaseTootorial

This release brings an update to #OrthoDB in FlyBase; we've worked with the OrthoDB https://www.orthodb.org/ team to implement a new API call that improves the accuracy of OrthoDB-derived #orthologs shown in FlyBase.
We use OrthoDB for ortholog calls of Dmel genes in many organisms (other than those represented in the FlyBase implementation of DIOPT), including other Drosophila species & arthropods.
@ensembl #FlyBaseTootorial

Welcome @dessimoz, director of @SIB, PI of the #OMAbrowser database, and professor at #UNIL, to #MastodonScience! #bioinformatics #ComputationalBiology #orthologs

Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE

#evolution #orthologs #paralogs #chatGPT #Haiku

Orthologs, lots of #orthologs!

#OrthoDB: 17 551 bacteria, 607 archea, 1935 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac998/6814468

#EggNOG: 10 756 bacteria, 457 archaea, 1322 eukaryotes https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac1022/6833261

#bioinformatics #ortholog #databases