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#busco — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #busco, aggregated by home.social.

  1. 🧬 How to evaluate the quality of a genome annotation?

    👉 Introducing #OMArk, a groundbreaking tool by SIB’s Yannis Nevers
    & collegues from the Dessimoz lab @dee_unil.
    It is part of the SIB Resource #SwissOrthology and now featured in Nature biotechnology: nature.com/articles/s41587-024

    💡OMArk determines the completeness of gene sets and identifies any spurious genes or contaminants.

    Try out this new addition addition to the essential SIB’s toolbox for genomic data quality, alongside #BUSCO!

  2. hola 😊

    las cosillas están difíciles ahora mismo así que a ver si por aquí llega a la persona indicada 🥹 #busco #trabajo en #Valladolid o en #remoto

    soy #fotógrafa, #communitymanager, sé inglés, llevo muchos años creando contenido en rrss, estudié creatividad publicitaria, he pasado muchos años hablando de libros en internet

    si tienes trabajo de #dependienta también me interesa
    si necesitas ayuda con las rrss de tu negocio, soy tu chica!

    necesito trabajo

  3. hola 😊

    las cosillas están difíciles ahora mismo así que a ver si por aquí llega a la persona indicada 🥹 #busco #trabajo en #Valladolid o en #remoto

    soy #fotógrafa, #communitymanager, sé inglés, llevo muchos años creando contenido en rrss, estudié creatividad publicitaria, he pasado muchos años hablando de libros en internet

    si tienes trabajo de #dependienta también me interesa
    si necesitas ayuda con las rrss de tu negocio, soy tu chica!

    necesito trabajo

  4. hola 😊

    las cosillas están difíciles ahora mismo así que a ver si por aquí llega a la persona indicada 🥹 #busco #trabajo en #Valladolid o en #remoto

    soy #fotógrafa, #communitymanager, sé inglés, llevo muchos años creando contenido en rrss, estudié creatividad publicitaria, he pasado muchos años hablando de libros en internet

    si tienes trabajo de #dependienta también me interesa
    si necesitas ayuda con las rrss de tu negocio, soy tu chica!

    necesito trabajo

  5. conda hates me. I just messed around for nearly two days trying to get BUSCO installed, both my laptop and a cluster. I can't get it going...

    I love the old BUSCOv3 virtual machine, but I have 5 mammalian genomes to evaluate and according to manual, 12CPUs was 6 days/genome, which means this may work, but at glacial scale.

    So, anyone out there have *any* version of BUSCO running on something not a potato? Can provide fasta and lineage files, and my endless gratitude. 😬

    #BUSCO #genomics

  6. #SIB course:
    "#Biodiversity #bioinformatics: from large-scale #phylogenomics to gene families and functions"
    30.08-1.09 Lausanne #UNIL.
    - key evolutionary concepts
    - methodological approaches
    - hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. #OrthoDB, #BUSCO, #OMA @bgeedb
    Trainers: @rmwaterhouse, N Glover, C Dessimoz, & me sib.swiss/training/course/2023 #MolecularEvolution #Genomics #training

  7. Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
    • Introduction to molecular evolution & phylogenetics
    • Orthology-focused arthropod comparative genomics
    • Duplication of genes and genomes, expression
    with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi sib.swiss/training/course/2023

  8. Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
    • Introduction to molecular evolution & phylogenetics
    • Orthology-focused arthropod comparative genomics
    • Duplication of genes and genomes, expression
    with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi sib.swiss/training/course/2023

  9. Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
    • Introduction to molecular evolution & phylogenetics
    • Orthology-focused arthropod comparative genomics
    • Duplication of genes and genomes, expression
    with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi sib.swiss/training/course/2023

  10. Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
    • Introduction to molecular evolution & phylogenetics
    • Orthology-focused arthropod comparative genomics
    • Duplication of genes and genomes, expression
    with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi sib.swiss/training/course/2023

  11. Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
    • Introduction to molecular evolution & phylogenetics
    • Orthology-focused arthropod comparative genomics
    • Duplication of genes and genomes, expression
    with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi sib.swiss/training/course/2023

  12. Looks interesting, Heng Li proposes a faster #BUSCO: "miniBUSCO achieves a 14-fold speedup over BUSCO. Furthermore, miniBUSCO reports a more accurate completeness of 99.6% than BUSCO’s completeness of 95.7%, which is in close agreement with the annotation completeness of 99.5% for T2T-CHM13"
    biorxiv.org/content/10.1101/20 #bioinformatics #HumanGenome #genomics