#busco — Public Fediverse posts

[CONSEGUIDO] Procuro PC de segunda man (torre só) coas seguintes características:
[Busco PC de segunda mano (torre solo) con las siguientes características:]

- Intel corei5-8500 / AMD Ryzen 5 3500
- 16 GB de RAM
- Gráficos: NVIDIA RTX 2060 o superior, o GeForce GTX 1660 6GB / Radeon RX 5500 XT 8GB
DirectX: Versión 12
#segundaman #segundamano #hardware #pc #ordenador #busco

🧬 How to evaluate the quality of a genome annotation?

👉 Introducing #OMArk, a groundbreaking tool by SIB’s Yannis Nevers
& collegues from the Dessimoz lab @dee_unil.
It is part of the SIB Resource #SwissOrthology and now featured in Nature biotechnology: https://www.nature.com/articles/s41587-024-02147-w

💡OMArk determines the completeness of gene sets and identifies any spurious genes or contaminants.

Try out this new addition addition to the essential SIB’s toolbox for genomic data quality, alongside #BUSCO!

hola 😊

las cosillas están difíciles ahora mismo así que a ver si por aquí llega a la persona indicada 🥹 #busco #trabajo en #Valladolid o en #remoto

soy #fotógrafa, #communitymanager, sé inglés, llevo muchos años creando contenido en rrss, estudié creatividad publicitaria, he pasado muchos años hablando de libros en internet

si tienes trabajo de #dependienta también me interesa
si necesitas ayuda con las rrss de tu negocio, soy tu chica!

necesito trabajo

conda hates me. I just messed around for nearly two days trying to get BUSCO installed, both my laptop and a cluster. I can't get it going...

I love the old BUSCOv3 virtual machine, but I have 5 mammalian genomes to evaluate and according to manual, 12CPUs was 6 days/genome, which means this may work, but at glacial scale.

So, anyone out there have *any* version of BUSCO running on something not a potato? Can provide fasta and lineage files, and my endless gratitude. 😬

#BUSCO #genomics

#SIB course:
"#Biodiversity #bioinformatics: from large-scale #phylogenomics to gene families and functions"
30.08-1.09 Lausanne #UNIL.
- key evolutionary concepts
- methodological approaches
- hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. #OrthoDB, #BUSCO, #OMA @bgeedb
Trainers: @rmwaterhouse, N Glover, C Dessimoz, & me https://www.sib.swiss/training/course/20230830_COMGE #MolecularEvolution #Genomics #training

Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE

Looks interesting, Heng Li proposes a faster #BUSCO: "miniBUSCO achieves a 14-fold speedup over BUSCO. Furthermore, miniBUSCO reports a more accurate completeness of 99.6% than BUSCO’s completeness of 95.7%, which is in close agreement with the annotation completeness of 99.5% for T2T-CHM13"
https://www.biorxiv.org/content/10.1101/2023.06.03.543588v1 #bioinformatics #HumanGenome #genomics