#proteomic — Public Fediverse posts

#Proteomic analysis reveals how #phosphite contributes to the fight against chemically resistant dieback.

#agriculture #oomycetes #phytopathology

https://phys.org/news/2024-05-proteomic-analysis-reveals-phosphite-contributes.html

'Functional Directed Acyclic Graphs', by Kuang-Yao Lee, Lexin Li, Bing Li.

http://jmlr.org/papers/v25/22-1038.html

#graphs #graph #proteomic

RT @NCIDataSci: #CPTAC researchers have produced a resource of global #proteomic and post-translational modifications, whole genome and whole exome, miRNA and totalRNA sequencing, DNA methylation, imaging & clinical information for cancer patients across 10 tumor types. https://proteomics.cancer.gov/news_and_announcements/introducing-suite-pan-cancer-multi-omic-papers-cptac

RT @NCIJBSloan: New resource coming from #CPTAC! It includes #proteomic and post-translational modifications, whole genome and whole exome sequencing, miRNA and totalRNA sequencing, imaging, and clinical information for over 1,000 cancer patients across 10 tumor types. https://proteomics.cancer.gov/news_and_announcements/introducing-suite-pan-cancer-multi-omic-papers-cptac

RT @NCIDataSci: Access, analyze, & store #proteomic data in the updated search engine, PepQuery2! The tool was designed to empower proteomics researchers with quick #DataAnalysis. See how you can access it: https://datascience.cancer.gov/news-events/news/search-engine-tool-targets-peptide-mass-spectrometry-proteomic-data-sets

#Proteomic analysis of cerebrospinal fluid from individuals with autosomal dominant #Alzheimers disease reveals how this complex and chronic disease evolves over many decades

"Our results highlight the multifaceted landscape of AD pathophysiology and its temporal evolution. Such knowledge will be critical for developing precision therapeutic interventions and biomarkers for AD beyond those associated with Aβ and tau."
@naturemedicine

https://www.nature.com/articles/s41591-023-02476-4

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1669273550065225729

UniSpec: A Deep Learning Approach for Predicting Energy-Sensitive Peptide Tandem Mass Spectra and Generating Proteomics-Wide In-Silico Spectral Libraries | https://www.biorxiv.org/content/10.1101/2023.06.14.544947v1 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1666359345498722306

Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-023-05360-7 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1669308792746520577

Evaluation of the Limit of Detection of Bacteria by Tandem Mass Spectrometry Proteotyping and Phylopeptidomics | https://www.mdpi.com/2076-2607/11/5/1170 #proteomics

A @pastelbio favourite #proteomic post from the last couple of months …

Pastel BioScience on Twitter https://twitter.com/PastelBio/status/1648244984980680706

Depletion of abundant plasma proteins for extracellular vesicle proteome characterization: benefits and pitfalls | https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1007%2Fs00216-023-04684-w #proteomics

RT @isb_cgc: Proteomic Data Commons release V2.15 case, file, and quant data are now available in #BigQuery. Check out the new tables using our BigQuery Table Search tool at https://isb-cgc.appspot.com/bq_meta_search/ and filter Source by PDC.
#proteome #NCIProteomics #CancerResearch #proteomic https://twitter.com/isb_cgc/status/1622624155496480771/photo/1

Master thesis/student researcher in Microbiology/Systems Biology/Proteomics @RalserLab

We're looking for a Master student/pre-doc to join our lab to study the #proteomic diversity of yeast isolates – join us in #Berlin!

http://shorturl.at/gMQZ9

@ChariteBerlin @ishengtsai

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo

*New #preprint alert* Patramanis et al. PaleoProPhyler: a #reproducible #pipeline for #phylogenetic inference using #ancient #proteins. 🦴

We developed a pipeline for aligning ancient #peptide data and performing #evolutionary analyses w/it. The pipeline can not only process #proteomic data, but also harness #genetic data in different formats (#CRAM, #BAM, #VCF) and translate it, so as to create reference panels for #phyloproteomics.

https://www.biorxiv.org/content/10.1101/2022.12.12.519721v1?med=mas

#ScienceMastodon #Evolution #EcoEvo

#Introductions

I'm a #DentalAnthropologist and #bioarchaeologist who studies early life stress in relation to later life 'health'. I look at microscopic dental indicators of growth disruption and skeletal indicators of morbidity and mortality currently in #medieval populations. I enjoy collaborating on #aDNA and #proteomic approaches for improved understanding of #disease and #palaeodemography in the populations I study.

In my spare time, I like to read, walk, and spend time with my dog.

#Introductions

I'm a #DentalAnthropologist and #bioarchaeologist who studies early life stress in relation to later life 'health'. I look at microscopic dental indicators of growth disruption and skeletal indicators of morbidity and mortality currently in #medieval populations. I enjoy collaborating on #aDNA and #proteomic approaches for improved understanding of #disease and #palaeodemography in the populations I study.

In my spare time, I like to read, walk, and spend time with my dog.

#Introductions

I'm a #DentalAnthropologist and #bioarchaeologist who studies early life stress in relation to later life 'health'. I look at microscopic dental indicators of growth disruption and skeletal indicators of morbidity and mortality currently in #medieval populations. I enjoy collaborating on #aDNA and #proteomic approaches for improved understanding of #disease and #palaeodemography in the populations I study.

In my spare time, I like to read, walk, and spend time with my dog.