Search
1000 results for “FBa”
-
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC systems (you can run Snakemake on other platforms, too).
My to-do list:
- an assertion template for workflows: ✅
- another for reports: ✅ (simple datasets are already in the #nanopub verse)
- a plugin to gather software metadata and publish as a nanopub ❌ (half done: #SnakemakeHackathon2026 )Kudos to @nanopub / @tkuhn and @johanneskoester - without them this pursuit would (have been) futile! And my feeling is that @fbartusch will play an important role in any further development ...
-
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC systems (you can run Snakemake on other platforms, too).
My to-do list:
- an assertion template for workflows: ✅
- another for reports: ✅ (simple datasets are already in the #nanopub verse)
- a plugin to gather software metadata and publish as a nanopub ❌ (half done: #SnakemakeHackathon2026 )Kudos to @nanopub / @tkuhn and @johanneskoester - without them this pursuit would (have been) futile! And my feeling is that @fbartusch will play an important role in any further development ...
-
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC systems (you can run Snakemake on other platforms, too).
My to-do list:
- an assertion template for workflows: ✅
- another for reports: ✅ (simple datasets are already in the #nanopub verse)
- a plugin to gather software metadata and publish as a nanopub ❌ (half done: #SnakemakeHackathon2026 )Kudos to @nanopub / @tkuhn and @johanneskoester - without them this pursuit would (have been) futile! And my feeling is that @fbartusch will play an important role in any further development ...
-
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC systems (you can run Snakemake on other platforms, too).
My to-do list:
- an assertion template for workflows: ✅
- another for reports: ✅ (simple datasets are already in the #nanopub verse)
- a plugin to gather software metadata and publish as a nanopub ❌ (half done: #SnakemakeHackathon2026 )Kudos to @nanopub / @tkuhn and @johanneskoester - without them this pursuit would (have been) futile! And my feeling is that @fbartusch will play an important role in any further development ...
-
What do you see here? This is an example knowledge graph describing a #Snakemake analysis workflow. You see the workflow description, a linked data set and a linked report.
All work done to boost #HPC user support for those conducting their workflows on HPC systems (you can run Snakemake on other platforms, too).
My to-do list:
- an assertion template for workflows: ✅
- another for reports: ✅ (simple datasets are already in the #nanopub verse)
- a plugin to gather software metadata and publish as a nanopub ❌ (half done: #SnakemakeHackathon2026 )Kudos to @nanopub / @tkuhn and @johanneskoester - without them this pursuit would (have been) futile! And my feeling is that @fbartusch will play an important role in any further development ...
-
We are excited to announce a new training course on Bgee 🧬
Course: Gene Expression made Useful Easily: Tools and Database of Bgee
Date: Friday 29 May 2026
Taught by: the Bgee team (Frédéric Bastian and Marc Robinson-Rechavi)
Learn more: https://www.sib.swiss/training/course/20260529_BGEEL
#bioinformatics #training #RNAseq #singlecell #GeneExpression #bgee
@SIB @marcrr @fbastian -
@Dutch_Reproducibility_Network
In fact, I am a #Snakemake co-maintainer and teacher. I was not aware of WorkflowHub - and that was an omission on my part. We actually support and favour this kind of registration: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#uploading-workflows-to-workflowhub
In my original post, I also neglected to mention the integration of WorkflowHub with #RO-Crate and in turn, the integration of RO-Crates with nanopubs. I am actively working on a better support for #nanopub and RO-Crates with @fbartusch. The question, how I teach that stands: The #HPC world (at least my bubble) is not really supportive for #ReproducibleComputing . All #OpenScience shenanigans are frowned upon. And PIs in my vicinity are still on this level: https://phdcomics.com/comics/archive.php?comicid=1531 - so, how do we educate the educators?
-
@Dutch_Reproducibility_Network
In fact, I am a #Snakemake co-maintainer and teacher. I was not aware of WorkflowHub - and that was an omission on my part. We actually support and favour this kind of registration: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#uploading-workflows-to-workflowhub
In my original post, I also neglected to mention the integration of WorkflowHub with #RO-Crate and in turn, the integration of RO-Crates with nanopubs. I am actively working on a better support for #nanopub and RO-Crates with @fbartusch. The question, how I teach that stands: The #HPC world (at least my bubble) is not really supportive for #ReproducibleComputing . All #OpenScience shenanigans are frowned upon. And PIs in my vicinity are still on this level: https://phdcomics.com/comics/archive.php?comicid=1531 - so, how do we educate the educators?
-
@Dutch_Reproducibility_Network
In fact, I am a #Snakemake co-maintainer and teacher. I was not aware of WorkflowHub - and that was an omission on my part. We actually support and favour this kind of registration: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#uploading-workflows-to-workflowhub
In my original post, I also neglected to mention the integration of WorkflowHub with #RO-Crate and in turn, the integration of RO-Crates with nanopubs. I am actively working on a better support for #nanopub and RO-Crates with @fbartusch. The question, how I teach that stands: The #HPC world (at least my bubble) is not really supportive for #ReproducibleComputing . All #OpenScience shenanigans are frowned upon. And PIs in my vicinity are still on this level: https://phdcomics.com/comics/archive.php?comicid=1531 - so, how do we educate the educators?
-
@Dutch_Reproducibility_Network
In fact, I am a #Snakemake co-maintainer and teacher. I was not aware of WorkflowHub - and that was an omission on my part. We actually support and favour this kind of registration: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#uploading-workflows-to-workflowhub
In my original post, I also neglected to mention the integration of WorkflowHub with #RO-Crate and in turn, the integration of RO-Crates with nanopubs. I am actively working on a better support for #nanopub and RO-Crates with @fbartusch. The question, how I teach that stands: The #HPC world (at least my bubble) is not really supportive for #ReproducibleComputing . All #OpenScience shenanigans are frowned upon. And PIs in my vicinity are still on this level: https://phdcomics.com/comics/archive.php?comicid=1531 - so, how do we educate the educators?
-
@Dutch_Reproducibility_Network
In fact, I am a #Snakemake co-maintainer and teacher. I was not aware of WorkflowHub - and that was an omission on my part. We actually support and favour this kind of registration: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#uploading-workflows-to-workflowhub
In my original post, I also neglected to mention the integration of WorkflowHub with #RO-Crate and in turn, the integration of RO-Crates with nanopubs. I am actively working on a better support for #nanopub and RO-Crates with @fbartusch. The question, how I teach that stands: The #HPC world (at least my bubble) is not really supportive for #ReproducibleComputing . All #OpenScience shenanigans are frowned upon. And PIs in my vicinity are still on this level: https://phdcomics.com/comics/archive.php?comicid=1531 - so, how do we educate the educators?
-
Was erwartet ihr noch von @monaneubaur und einer #Partei @gruenenrw @GrueneBundestag ? Machterhalt hat Vorrang vor Inhalten! 🤮
Danke für 152 #Castor Transporte von #julich nach #ahaus , Mona war es entweder egal oder sie hat die JEN und Bundesministerien unterschätzt, @fbanaszak hat im Haushaltsausschuss für #atommull Verschiebung gestimmt
Danke für #Lutzerath danke für #sundi danke für Raffinerie-Pakt...
Positive Aspekte von #schwarz-grün bitte Posten, um Dauerfrust vorzubeugen.
-
Was erwartet ihr noch von @monaneubaur und einer #Partei @gruenenrw @GrueneBundestag ? Machterhalt hat Vorrang vor Inhalten! 🤮
Danke für 152 #Castor Transporte von #julich nach #ahaus , Mona war es entweder egal oder sie hat die JEN und Bundesministerien unterschätzt, @fbanaszak hat im Haushaltsausschuss für #atommull Verschiebung gestimmt
Danke für #Lutzerath danke für #sundi danke für Raffinerie-Pakt...
Positive Aspekte von #schwarz-grün bitte Posten, um Dauerfrust vorzubeugen.
-
Was erwartet ihr noch von @monaneubaur und einer #Partei @gruenenrw @GrueneBundestag ? Machterhalt hat Vorrang vor Inhalten! 🤮
Danke für 152 #Castor Transporte von #julich nach #ahaus , Mona war es entweder egal oder sie hat die JEN und Bundesministerien unterschätzt, @fbanaszak hat im Haushaltsausschuss für #atommull Verschiebung gestimmt
Danke für #Lutzerath danke für #sundi danke für Raffinerie-Pakt...
Positive Aspekte von #schwarz-grün bitte Posten, um Dauerfrust vorzubeugen.
-
Great, now Infuse and Jellyfin are arguing which is resulting in Infuse no longer getting updated from the Jellyfin library. I'm pretty sure it's from the update to Jellyfin 10.11.2...unfortunately I don't think there's a ton that can be done on my side except wait for an update to fix things.
```
[2025-11-14 22:31:48.195 +00:00] [ERR] Error processing request. URL "GET" "/InfuseSync/Checkpoint/fba3288a4e5a46aa95cdf23c982eb948/UpdatedItems".
System.TypeLoadException: Could not load type 'Jellyfin.Data.Entities.User' from assembly 'Jellyfin.Data, Version=10.11.2.0, Culture=neutral, PublicKeyToken=null'.
``` -
Great, now Infuse and Jellyfin are arguing which is resulting in Infuse no longer getting updated from the Jellyfin library. I'm pretty sure it's from the update to Jellyfin 10.11.2...unfortunately I don't think there's a ton that can be done on my side except wait for an update to fix things.
```
[2025-11-14 22:31:48.195 +00:00] [ERR] Error processing request. URL "GET" "/InfuseSync/Checkpoint/fba3288a4e5a46aa95cdf23c982eb948/UpdatedItems".
System.TypeLoadException: Could not load type 'Jellyfin.Data.Entities.User' from assembly 'Jellyfin.Data, Version=10.11.2.0, Culture=neutral, PublicKeyToken=null'.
``` -
Great, now Infuse and Jellyfin are arguing which is resulting in Infuse no longer getting updated from the Jellyfin library. I'm pretty sure it's from the update to Jellyfin 10.11.2...unfortunately I don't think there's a ton that can be done on my side except wait for an update to fix things.
```
[2025-11-14 22:31:48.195 +00:00] [ERR] Error processing request. URL "GET" "/InfuseSync/Checkpoint/fba3288a4e5a46aa95cdf23c982eb948/UpdatedItems".
System.TypeLoadException: Could not load type 'Jellyfin.Data.Entities.User' from assembly 'Jellyfin.Data, Version=10.11.2.0, Culture=neutral, PublicKeyToken=null'.
``` -
Great, now Infuse and Jellyfin are arguing which is resulting in Infuse no longer getting updated from the Jellyfin library. I'm pretty sure it's from the update to Jellyfin 10.11.2...unfortunately I don't think there's a ton that can be done on my side except wait for an update to fix things.
```
[2025-11-14 22:31:48.195 +00:00] [ERR] Error processing request. URL "GET" "/InfuseSync/Checkpoint/fba3288a4e5a46aa95cdf23c982eb948/UpdatedItems".
System.TypeLoadException: Could not load type 'Jellyfin.Data.Entities.User' from assembly 'Jellyfin.Data, Version=10.11.2.0, Culture=neutral, PublicKeyToken=null'.
``` -
Great, now Infuse and Jellyfin are arguing which is resulting in Infuse no longer getting updated from the Jellyfin library. I'm pretty sure it's from the update to Jellyfin 10.11.2...unfortunately I don't think there's a ton that can be done on my side except wait for an update to fix things.
```
[2025-11-14 22:31:48.195 +00:00] [ERR] Error processing request. URL "GET" "/InfuseSync/Checkpoint/fba3288a4e5a46aa95cdf23c982eb948/UpdatedItems".
System.TypeLoadException: Could not load type 'Jellyfin.Data.Entities.User' from assembly 'Jellyfin.Data, Version=10.11.2.0, Culture=neutral, PublicKeyToken=null'.
``` -
Amanhã, 11 de Novembro, vamo-nos dividir entre Évora e Lisboa, entre a linguística e o cinema. Ou talvez estaremos mais próximos do que parece...
🗣 às 17h, na Universidade de Évora, "O Livro dos Nomes de Angola": https://ihc.fcsh.unl.pt/events/livro-nomes-angola/
🎦 às 18h30, na FBAUL, "Uncle C — Uma Trajectória de Vida a Registar: https://ihc.fcsh.unl.pt/events/unclec-trajectoria/ENTRADA LIVRE
#Histodons #Angola #Cinema #UncleC #Anthropodons #África #Amadora #FilmArchives #Lisbon #UncleC #IndepêndênciaDeAngola #CulturalHistory #Linguistics
-
Amanhã, 11 de Novembro, vamo-nos dividir entre Évora e Lisboa, entre a linguística e o cinema. Ou talvez estaremos mais próximos do que parece...
🗣 às 17h, na Universidade de Évora, "O Livro dos Nomes de Angola": https://ihc.fcsh.unl.pt/events/livro-nomes-angola/
🎦 às 18h30, na FBAUL, "Uncle C — Uma Trajectória de Vida a Registar: https://ihc.fcsh.unl.pt/events/unclec-trajectoria/ENTRADA LIVRE
#Histodons #Angola #Cinema #UncleC #Anthropodons #África #Amadora #FilmArchives #Lisbon #UncleC #IndepêndênciaDeAngola #CulturalHistory #Linguistics
-
Amanhã, 11 de Novembro, vamo-nos dividir entre Évora e Lisboa, entre a linguística e o cinema. Ou talvez estaremos mais próximos do que parece...
🗣 às 17h, na Universidade de Évora, "O Livro dos Nomes de Angola": https://ihc.fcsh.unl.pt/events/livro-nomes-angola/
🎦 às 18h30, na FBAUL, "Uncle C — Uma Trajectória de Vida a Registar: https://ihc.fcsh.unl.pt/events/unclec-trajectoria/ENTRADA LIVRE
#Histodons #Angola #Cinema #UncleC #Anthropodons #África #Amadora #FilmArchives #Lisbon #UncleC #IndepêndênciaDeAngola #CulturalHistory #Linguistics
-
Amanhã, 11 de Novembro, vamo-nos dividir entre Évora e Lisboa, entre a linguística e o cinema. Ou talvez estaremos mais próximos do que parece...
🗣 às 17h, na Universidade de Évora, "O Livro dos Nomes de Angola": https://ihc.fcsh.unl.pt/events/livro-nomes-angola/
🎦 às 18h30, na FBAUL, "Uncle C — Uma Trajectória de Vida a Registar: https://ihc.fcsh.unl.pt/events/unclec-trajectoria/ENTRADA LIVRE
#Histodons #Angola #Cinema #UncleC #Anthropodons #África #Amadora #FilmArchives #Lisbon #UncleC #IndepêndênciaDeAngola #CulturalHistory #Linguistics
-
Amanhã, 11 de Novembro, vamo-nos dividir entre Évora e Lisboa, entre a linguística e o cinema. Ou talvez estaremos mais próximos do que parece...
🗣 às 17h, na Universidade de Évora, "O Livro dos Nomes de Angola": https://ihc.fcsh.unl.pt/events/livro-nomes-angola/
🎦 às 18h30, na FBAUL, "Uncle C — Uma Trajectória de Vida a Registar: https://ihc.fcsh.unl.pt/events/unclec-trajectoria/ENTRADA LIVRE
#Histodons #Angola #Cinema #UncleC #Anthropodons #África #Amadora #FilmArchives #Lisbon #UncleC #IndepêndênciaDeAngola #CulturalHistory #Linguistics
-
📹 A equipa do #FILMASPORA e o CIEBA organizam a masterclass “Uncle C — Uma Trajectória de Vida a Registar”, com Corsino Furtado e Maíra Zenun.
A aula traz para o centro da discussão a ideia do cinema enquanto ferramenta de trabalho colectivo e estratégia de transformação social.
11 de Novembro, 18h30, na FBAUL.
ℹ️ https://ihc.fcsh.unl.pt/events/unclec-trajectoria/
#Histodons #Anthropodons #Cinema #PopularFilms #CinemaPopular #África #Amadora #Cinema #FilmArchives #SocialIntervention #Lisbon #UncleC
-
📹 A equipa do #FILMASPORA e o CIEBA organizam a masterclass “Uncle C — Uma Trajectória de Vida a Registar”, com Corsino Furtado e Maíra Zenun.
A aula traz para o centro da discussão a ideia do cinema enquanto ferramenta de trabalho colectivo e estratégia de transformação social.
11 de Novembro, 18h30, na FBAUL.
ℹ️ https://ihc.fcsh.unl.pt/events/unclec-trajectoria/
#Histodons #Anthropodons #Cinema #PopularFilms #CinemaPopular #África #Amadora #Cinema #FilmArchives #SocialIntervention #Lisbon #UncleC
-
📹 A equipa do #FILMASPORA e o CIEBA organizam a masterclass “Uncle C — Uma Trajectória de Vida a Registar”, com Corsino Furtado e Maíra Zenun.
A aula traz para o centro da discussão a ideia do cinema enquanto ferramenta de trabalho colectivo e estratégia de transformação social.
11 de Novembro, 18h30, na FBAUL.
ℹ️ https://ihc.fcsh.unl.pt/events/unclec-trajectoria/
#Histodons #Anthropodons #Cinema #PopularFilms #CinemaPopular #África #Amadora #Cinema #FilmArchives #SocialIntervention #Lisbon #UncleC
-
📹 A equipa do #FILMASPORA e o CIEBA organizam a masterclass “Uncle C — Uma Trajectória de Vida a Registar”, com Corsino Furtado e Maíra Zenun.
A aula traz para o centro da discussão a ideia do cinema enquanto ferramenta de trabalho colectivo e estratégia de transformação social.
11 de Novembro, 18h30, na FBAUL.
ℹ️ https://ihc.fcsh.unl.pt/events/unclec-trajectoria/
#Histodons #Anthropodons #Cinema #PopularFilms #CinemaPopular #África #Amadora #Cinema #FilmArchives #SocialIntervention #Lisbon #UncleC
-
📹 A equipa do #FILMASPORA e o CIEBA organizam a masterclass “Uncle C — Uma Trajectória de Vida a Registar”, com Corsino Furtado e Maíra Zenun.
A aula traz para o centro da discussão a ideia do cinema enquanto ferramenta de trabalho colectivo e estratégia de transformação social.
11 de Novembro, 18h30, na FBAUL.
ℹ️ https://ihc.fcsh.unl.pt/events/unclec-trajectoria/
#Histodons #Anthropodons #Cinema #PopularFilms #CinemaPopular #África #Amadora #Cinema #FilmArchives #SocialIntervention #Lisbon #UncleC
-
> Your abstract 'Live Demo: From Snakemake Run to Scholarly Record - Automatic Nanopublications & Workflow Run RO‑Crate Generation' has been successfully submitted. It is registered with the number #150. You will be notified by email with the submission details.
I have quite some work to do ...
PS should have tagged you @fbartusch 😉
#nanopub #ROcrate #Snakemake #derse26