#sbgrid — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #sbgrid, aggregated by home.social.
-
New Title Alert: af_analysis- is a Python package for analysis of AlphaFold protein structure predictions from AlphaFold 2/3, ColabFold, AlphaFold-Multimer, AlphaPulldown, Boltz1, Chai-1, and MassiveFold.
Learn more here: https://github.com/samuelmurail/af_analysis/
-
Join our software webinar on May 12th to hear from Jarrett Johnson, Senior Developer from Schrödinger, on Upcoming improvements to visualization and CryoEM support in PyMOL.
Tuesday, May 12, 2026 - 12:00pm ET
Jarrett Johnson, Ph.D.
Senior Developer, Schrödinger, Inc.Register here: https://sbgrid.org/webinars/
-
Community Announcement:
Upcoming event from our partners at Instruc-ERIC
Calorimetric and Spectroscopic Characterization of Biomolecules
September 7-11, 2026 | CEITEC Brno, Czech Republic
Organized in collaboration with the Biomolecular Interactions and Crystallography Core Facility at The Central European Institute of TechnologyRegister here: https://instruct-eric.org/events/instruct-course-on-calorimetric-and-spectroscopic-characterization-of-biomolecules
-
Fisk University student Cariuna Ellison's highlight features an eLife publication from Jochen Zimmer's group at University of Virginia School of Medicine that describes the use of Cryo-EM to reveal how CvHAS utilizes a two-step mechanism to navigate the balance between substrate specificity and degeneracy.
Read more here: https://medium.com/sbgrid-community-news/molecular-proofreading-mechanisms-of-enzyme-binding-567ed3b5c4f2
-
Fisk University student Cariuna Ellison's highlight features an eLife publication from Jochen Zimmer's group at University of Virginia School of Medicine that describes the use of Cryo-EM to reveal how CvHAS utilizes a two-step mechanism to navigate the balance between substrate specificity and degeneracy.
Read more here: https://medium.com/sbgrid-community-news/molecular-proofreading-mechanisms-of-enzyme-binding-567ed3b5c4f2
-
Fisk University student Cariuna Ellison's highlight features an eLife publication from Jochen Zimmer's group at University of Virginia School of Medicine that describes the use of Cryo-EM to reveal how CvHAS utilizes a two-step mechanism to navigate the balance between substrate specificity and degeneracy.
Read more here: https://medium.com/sbgrid-community-news/molecular-proofreading-mechanisms-of-enzyme-binding-567ed3b5c4f2
-
Join our software webinar on April 14th to hear from José Luis Vilas Prieto on Image processing made simple with scipionTomo.
Tues, April 14, 2026-12:00pm ET
Jose Luis Vilas, Ph.D.
Investigator, National Biotechnology Center, CSICRegister here: https://sbgrid.org/webinars/
-
Technical Notes: March's software push includes updates to AlphaPulldown, AreTomo, Coot, CCP4, CryoLithe, DIALS, Doppio, Java, MPicker, OpenFreeEenergy, Open Force Field, qfit, SAMtools, Schrodinger, Scipion, and Xmipp.
More here: https://sbgrid.org/software/recent/archive/2026/03/
-
Meharry Medical College graduate KeAndreya Morrison, Ph.D. highlight features a publication from the laboratory of @William Clemons Jr. from Caltech that reveals how the ArsA enzyme reshapes itself to capture and expel toxic arsenic, providing a structural blueprint for microbial survival.
Read more here: https://medium.com/sbgrid-community-news/getting-rid-of-arsenic-234f1657275b
-
Caltech doctoral student Vida Robertson highlighted a publication from Jens Meiler, from Vanderbilt University, who describes using Rosetta to design antibiotic peptides called lanthipeptides with antibiotic properties.
Read more here: https://medium.com/sbgrid-community-news/investigating-antibiotic-characteristics-from-the-computer-fdce15233c36
-
New Title Alert: EMRNA is a deep learning based automated RNA modeling from cryo-EM maps.
More here: http://huanglab.phys.hust.edu.cn/EMRNA/
-
New Title Alert: doubleHelix is a tool for nucleic acid sequence identification, assignment and validation for cryo-EM and crystal structure models.
More here: https://gitlab.com/gchojnowski/doublehelix
-
New Title Alert: checkMySequence is a sequence assignment validation tool for in cryo-EM models.