Serdar Balci

Current test module can be got from:

https://github.com/sbalci/ClinicoPathJamoviModule/releases/tag/v0.0.37.07

https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.37.07/JamoviTest_0.0.0-win.jmo

https://github.com/sbalci/ClinicoPathJamoviModule/releases/download/v0.0.37.07/JamoviTest_0.0.0-mac.jmo

#jamovi #ClinicoPath #jsurvival

Microscopic control of pancreas tumor size is necessary for acurate staging:

“Horses out of the barn”: pancreatic ductal adenocarcinoma frequently extends beyond the grossly visible tumour, requiring microscopic rectification for accurate T-staging

https://onlinelibrary.wiley.com/share/author/BUTVB2QKSCH44YJ8T54X?target=10.1111/his.70099

#pathology #pathologist #oncology #macroscopy #stage #pancreas

Microscopic control of pancreas tumor size is necessary for acurate staging:

“Horses out of the barn”: pancreatic ductal adenocarcinoma frequently extends beyond the grossly visible tumour, requiring microscopic rectification for accurate T-staging

https://onlinelibrary.wiley.com/share/author/BUTVB2QKSCH44YJ8T54X?target=10.1111/his.70099

#pathology #pathologist #oncology #macroscopy #stage #pancreas

The Single Arm Survival tool in jamovi #jsurvival module singlearm function
analyzes overall survival characteristics for phase II trials, cancer registries, and cohort studies. Simply input time-to-event data (or diagnosis/follow-up dates) and outcome status.
#Pathology #DigitalPathology #Biostatistics #Oncology #SurvivalAnalysis #jamovi

The Single Arm Survival tool in jamovi #jsurvival module singlearm function
analyzes overall survival characteristics for phase II trials, cancer registries, and cohort studies. Simply input time-to-event data (or diagnosis/follow-up dates) and outcome status.
#Pathology #DigitalPathology #Biostatistics #Oncology #SurvivalAnalysis #jamovi

1st episode of the #ASDP #Webinar Series 2026, focusing on future of pathology in the era of digital transformation and artificial intelligence. As digital #pathology and AI continue to reshape diagnostic practice, this webinar will explore how innovative workflows and closer clinician - #pathologist collaboration can enhance clinical impact patient care.
Saturday, 17 January 2026
Time: 9:00 Istanbul
Pathology 2026 - Futuristic DP/AI workflows and clinicians engagement
https://zoom.us/webinar/register/WN_yxjqe8B2QkWTiCd-x-Lywg#/registration

1st episode of the #ASDP #Webinar Series 2026, focusing on future of pathology in the era of digital transformation and artificial intelligence. As digital #pathology and AI continue to reshape diagnostic practice, this webinar will explore how innovative workflows and closer clinician - #pathologist collaboration can enhance clinical impact patient care.
Saturday, 17 January 2026
Time: 9:00 Istanbul
Pathology 2026 - Futuristic DP/AI workflows and clinicians engagement
https://zoom.us/webinar/register/WN_yxjqe8B2QkWTiCd-x-Lywg#/registration

meddecide #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats #decisionstatistics
https://github.com/sbalci/meddecide/releases/tag/v0.0.32.69

meddecide #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats #decisionstatistics
https://github.com/sbalci/meddecide/releases/tag/v0.0.32.69

jjstatsplot #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats #dataviz
https://github.com/sbalci/jjstatsplot/releases/tag/v0.0.32.66

jjstatsplot #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats #dataviz
https://github.com/sbalci/jjstatsplot/releases/tag/v0.0.32.66

OncoPath #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats
https://github.com/sbalci/OncoPath/releases/tag/v0.0.32.64
- Waterfall and Spider Plot.
- Swimmer Plot.
- IHC Heterogeneity.
- Combining IHC study results to get a decision test result.

OncoPath #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats
https://github.com/sbalci/OncoPath/releases/tag/v0.0.32.64
- Waterfall and Spider Plot.
- Swimmer Plot.
- IHC Heterogeneity.
- Combining IHC study results to get a decision test result.

jsurvival #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics #rstats
https://github.com/sbalci/jsurvival/releases/tag/v0.0.32.62

jsurvival #jamovi module has new updates. Will be in library after tests. #statistics #biostatistics
https://github.com/sbalci/jsurvival/releases/tag/v0.0.32.62

The descriptive functions in #ClinicoPathDescriptives module for #jamovi 2.7.2 is ready for comments and feedbacks.
There are new features for pathology and oncology research. Waterfall, Spider, and Swimmer Plots are added. vartree is now using the latest version.
https://github.com/sbalci/ClinicoPathDescriptives/releases/tag/v0.0.3.90
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists #oncology #oncologists

The descriptive functions in #ClinicoPathDescriptives module for #jamovi 2.7.2 is ready for comments and feedbacks.
There are new features for pathology and oncology research. Waterfall, Spider, and Swimmer Plots are added. vartree is now using the latest version.
https://github.com/sbalci/ClinicoPathDescriptives/releases/tag/v0.0.3.90
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists #oncology #oncologists

Survival Analysis #jsurvival module for #jamovi 2.7.2 is ready for comments and feedbacks.
There are new and draft features for pathology and oncology research.
https://github.com/sbalci/jsurvival/releases/tag/v0.0.3.90
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists #oncology #oncologists

Survival Analysis #jsurvival module for #jamovi 2.7.2 is ready for comments and feedbacks.
There are new and draft features for pathology and oncology research.
https://github.com/sbalci/jsurvival/releases/tag/v0.0.3.90
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists #oncology #oncologists

Medical Decision #meddecide module for #jamovi 2.7.2 is ready for comments and feedbacks.
Added comparison among decision tests, decision analysis when there are no gold standard, and reanimation of abandoned ROC function.
https://github.com/sbalci/meddecide/releases/tag/v0.0.3.83
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists

Medical Decision #meddecide module for #jamovi 2.7.2 is ready for comments and feedbacks.
Added comparison among decision tests, decision analysis when there are no gold standard, and reanimation of abandoned ROC function.
https://github.com/sbalci/meddecide/releases/tag/v0.0.3.83
You can download .jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif
#statistics #biostatistics #pathology #pathologists

jamovi 2.7.2 is released.
I have updated #jjstatsplot as a draft for #jamovi library.
Please have a look and share your feedbacks.
https://github.com/sbalci/jjstatsplot/releases/tag/v0.0.3.82
You can download jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif #statistics #biostatistics #dataanalysis

jamovi 2.7.2 is released.
I have updated #jjstatsplot as a draft for #jamovi library.
Please have a look and share your feedbacks.
https://github.com/sbalci/jjstatsplot/releases/tag/v0.0.3.82
You can download jmo files and use sideload to use the module.
https://www.serdarbalci.com/ClinicoPathJamoviModule/reference/figures/jamovi-sideload.gif

8 ekim 2021'deki sunumda sorduğumuz AI modellerini alalım mı yapalım mı sorusuna cevap: https://pathsocjournals.onlinelibrary.wiley.com/doi/10.1002/path.6438
#patoloji #dijitalpatoloji #yapayzeka #patolog #pathology #pathologists #DigitalPathology #memorialpatoloji

8 ekim 2021'deki sunumda sorduğumuz AI modellerini alalım mı yapalım mı sorusuna cevap: https://pathsocjournals.onlinelibrary.wiley.com/doi/10.1002/path.6438
#patoloji #dijitalpatoloji #yapayzeka #patolog #pathology #pathologists #DigitalPathology #memorialpatoloji

Aiforia modellerini rutinde kullanmaya başladık. #dijitalpatoloji #patoloji #memorialpatoloji #pathology #pathologist
https://youtu.be/M1xmrS6bzjk?si=9G6ruaxIaHox_oZi&utm_source=ZTQxO
https://www.aiforia.com/resource-library/memorial-pathology-case-study

Aiforia modellerini rutinde kullanmaya başladık. #dijitalpatoloji #patoloji #memorialpatoloji #pathology #pathologist
https://youtu.be/M1xmrS6bzjk?si=9G6ruaxIaHox_oZi&utm_source=ZTQxO
https://www.aiforia.com/resource-library/memorial-pathology-case-study

#jamovi #meddecide modülüne şu an yetim kalmış psychoPDA modülündeki ROC analizini eklemeye niyetlendim. Şimdilik biraz karalama aşamasında. Deneyip geri bildirim yapan olursa sevinirim.

Side load ile yüklenebilecek windows paketi: https://github.com/sbalci/meddecide/releases/download/v0.0.3.04/meddecide_0.0.3.04.jmo

#rstats kodları: https://github.com/sbalci/meddecide/blob/master/R/psychopdaroc.b.R

#jamovi #meddecide modülüne şu an yetim kalmış psychoPDA modülündeki ROC analizini eklemeye niyetlendim. Şimdilik biraz karalama aşamasında. Deneyip geri bildirim yapan olursa sevinirim.

Side load ile yüklenebilecek windows paketi: https://github.com/sbalci/meddecide/releases/download/v0.0.3.04/meddecide_0.0.3.04.jmo

#rstats kodları: https://github.com/sbalci/meddecide/blob/master/R/psychopdaroc.b.R

HE & IHC Stain quality Analysis Tool. #vibecoding based on
An international study of stain variability in histopathology using qualitative and quantitative analysis, Journal of Pathology Informatics https://doi.org/10.1016/j.jpi.2025.100423 https://www.sciencedirect.com/science/article/pii/S2153353925000057
https://www.youtube.com/watch?v=MoDcp-ubxCE&ab_channel=SERDARBALCI
#pathology #pathologist #learningtocode #quality

HE & IHC Stain quality Analysis Tool. #vibecoding based on
An international study of stain variability in histopathology using qualitative and quantitative analysis, Journal of Pathology Informatics https://doi.org/10.1016/j.jpi.2025.100423 https://www.sciencedirect.com/science/article/pii/S2153353925000057
https://www.youtube.com/watch?v=MoDcp-ubxCE&ab_channel=SERDARBALCI
#pathology #pathologist #learningtocode #quality

Patoloji araştırmalarında neden jamovi kullanayım diyenler için bir liste: https://www.serdarbalci.com/ClinicoPathJamoviModule/articles/users-of-ClinicoPath.html #patoloji @jamovistats #jamovi #arastirma #istatistik #biyoistatistik

Patoloji araştırmalarında neden jamovi kullanayım diyenler için bir liste: https://www.serdarbalci.com/ClinicoPathJamoviModule/articles/users-of-ClinicoPath.html #patoloji @jamovistats #jamovi #arastirma #istatistik #biyoistatistik

In a recent brief downtime of #digitalpathology we had to ship slides to #pathologists and no one was happy because of returning back to #microscope.
Last less than half a day, and showed us that we have internalized the routine use of #digitalpathology. :)

In a recent brief downtime of #digitalpathology we had to ship slides to #pathologists and no one was happy because of returning back to #microscope.
Last less than half a day, and showed us that we have internalized the routine use of #digitalpathology. :)

Asian Society of #DigitalPathology webinar:
"Advancing digital and computational #pathology in Asia: Highlights from ASDP 2024 Seoul"
📅 Saturday, January 11, 2025
🕓 2:00PM Tokyo; 1:00PM Singapore; 10:30AM Mumbai; 8:00AM Istanbul
#PathSky #pathologists

https://zoom.us/webinar/register/WN__aiED3c8TJaVWQF9V44dJA#/registration

Asian Society of #DigitalPathology webinar:
"Advancing digital and computational #pathology in Asia: Highlights from ASDP 2024 Seoul"
📅 Saturday, January 11, 2025
🕓 2:00PM Tokyo; 1:00PM Singapore; 10:30AM Mumbai; 8:00AM Istanbul
#PathSky #pathologists

https://zoom.us/webinar/register/WN__aiED3c8TJaVWQF9V44dJA#/registration

updating jamovi module for survival:
jsurvival work in progress
suggestions are welcome: https://github.com/sbalci/jsurvival
https://youtu.be/YY6Fs1F_2Xk
#jamovi #jsurvival #survivalanalysis #statistics #biostatistics

updating jamovi module for survival:
jsurvival work in progress
suggestions are welcome: https://github.com/sbalci/jsurvival
https://youtu.be/YY6Fs1F_2Xk
#jamovi #jsurvival #survivalanalysis #statistics #biostatistics

One can use jamovi for survival analysis
#jamovi #rstats #ClinicoPath #jsurvival #pathology #pathologists
https://www.serdarbalci.com/ClinicoPathJamoviModule/

One can use jamovi for survival analysis
#jamovi #rstats #ClinicoPath #jsurvival #pathology #pathologists
https://www.serdarbalci.com/ClinicoPathJamoviModule/

One can use #jamovi for survival analysis
#jamovi #rstats #ClinicoPath #jsurvival #pathology #pathologists
https://pmc.ncbi.nlm.nih.gov/articles/PMC11162302/
https://www.serdarbalci.com/ClinicoPathJamoviModule/

One can use #jamovi for survival analysis
#jamovi #rstats #ClinicoPath #jsurvival #pathology #pathologists
https://pmc.ncbi.nlm.nih.gov/articles/PMC11162302/
https://www.serdarbalci.com/ClinicoPathJamoviModule/

The topics of articles selected for Pancreatobiliary Pathology Society Journal Watch
https://pbpath.org/journal-watch-archive/
#pbpath #pancreas #pathology #pancreatobiliary #society #journalwatch #articles #vosviewer #bibliometrics

The topics of articles selected for Pancreatobiliary Pathology Society Journal Watch
https://pbpath.org/journal-watch-archive/
#pbpath #pancreas #pathology #pancreatobiliary #society #journalwatch #articles #vosviewer #bibliometrics

The articles selected for Pancreatobiliary Pathology Society Journal Watch
https://pbpath.org/journal-watch-archive/
#pbpath #pancreas #pathology #pancreatobiliary #society #journalwatch #articles #litmaps #bibliometrics

The articles selected for Pancreatobiliary Pathology Society Journal Watch
https://pbpath.org/journal-watch-archive/
#pbpath #pancreas #pathology #pancreatobiliary #society #journalwatch #articles #litmaps #bibliometrics

I want to add variants that we encounter in daily routine practice to the #Histopathology #Atlas. The changes that surprise us at first glance, but as experience increases, we say 'it happens' and move on. For example, in the gallbladder, the Rokitansky-Aschoff Sinus can penetrate through the muscle layer and progress deeper. https://www.histopathologyatlas.com/gallbladder.html#sec-rokitansky-aschoff-sinus #pathology #pathologist #variant #morphology

I want to add variants that we encounter in daily routine practice to the #Histopathology #Atlas. The changes that surprise us at first glance, but as experience increases, we say 'it happens' and move on. For example, in the gallbladder, the Rokitansky-Aschoff Sinus can penetrate through the muscle layer and progress deeper. https://www.histopathologyatlas.com/gallbladder.html#sec-rokitansky-aschoff-sinus #pathology #pathologist #variant #morphology

Patoloji Atlası'na günlük rutin pratikte karşılaştığımız varyantları da eklemek istiyorum. İlk görünce şaşırdığımız, tecrübe arttıkça 'olur öyle' deyip geçtiğimiz değişiklikleri. Mesela safra kesesinde Rokitansky-Aschoff Sinus kas tabakasını aşıp derinlere ilerleyebilir. https://www.patolojiatlasi.com/safra-kesesi.html#sec-rokitansky-aschoff-sinus #patoloji #atlas #patolog #varyant #morfoloji