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Lluís Revilla

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  1. Lluís Revilla @Lluis_Revilla ·

    At the 100th meeting of R users Madrid .

    Nice to see a community thriving for ~10 years. I've kept in touch with them the last 5 years, and I presented rtweet a couple years ago on their meeting. Thanks for all the community effort

    #rstatses #rstats
  2. Lluís Revilla @Lluis_Revilla ·

    This year I couldn't attend , I hope the R Dev Day from @R_Contributors but I hope I can next at Warsaw.

    Thanks all that shared posts and comments here. I'll also catch up the videos at youtube.com/playlist?list=PL9q.

    Thanks @R_Foundation for organizing it and all the volunteers and sponsors that made it possible.

    #user2025 #user2026
  3. Lluís Revilla @Lluis_Revilla ·

    Finally the efforts of the dev day landed R-devel!! Some improvements on Rd2HTML mainly for accessibility.

    @eliocamp created the patch while I was identifying the issues. There are still some issues that can be improved as explained & discussed on the (now closed) issue bugs.r-project.org/show_bug.cg
    Diff: github.com/r-devel/r-svn/commi

    #user2024 #rstats
  4. Lluís Revilla @Lluis_Revilla ·

    Happy new year! I'm trying to recall some details of the talk by Kurt Hornik on . I found the slides, but would like to hear what was said about a specific topic. Although many of the conference content is on the Youtube account youtube.com/@useRConference_gl, I haven't found that talk (event if it was a keynote). Does anyone know if it was recorded and if it will be shared? I wanted to confirm about some CRAN policies/practices before asking directly/publicly on a mailing list.

    #user2024 #rstats
  5. Lluís Revilla @Lluis_Revilla ·
    CW: Bioinformatician position available

    I will be leaving my current position soon. If you want to work on and on infection diseases such as or let me know. The position is close to a hospital with possibility to work in clinical trials. I use , linux terminal tools, cellranger and other mapping tools.

    The group is great, the science in the group and the city () is excellent. We also enjoy great sea views from up the mountain

    #single_cell #tcr #hiv #covid #rstats #barcelona
  6. Lluís Revilla @Lluis_Revilla ·

    @lwpembleton @grrrck @adamhsparks @defuneste @danwwilson @milesmcbain @njtierney @jimjamslam the workstation at work (ubuntu 22, 24 cores, 125GB RAM memory, 2TB storage). Working very well for omics analysis , and

    #single_cell #scrna #methylation #transcriptomics #shareyoursetup
  7. Lluís Revilla @Lluis_Revilla ·

    I wrote a blog post about my experience at :rstats: : llrs.dev/post/2024/07/28/the-m
    I focus on the ambient and my purpose of going there and not the content.

    Comment here and explain your experience!

    #user2024
  8. Lluís Revilla @Lluis_Revilla ·

    Surprised to see @Bioconductor methods missing from this preprint comparing and for . Not even a mention that Bioconductor is popular to analyze single cell data. Sometimes it is amazing what a company (10x genomics) recommending a OSS software can do to a community: biorxiv.org/content/10.1101/20

    #bioinformatics #seurat #scanpy #scrnaseq
  9. Lluís Revilla @Lluis_Revilla ·

    @foaylward .mtx files are read by Matrix but @bioconductor has great packages and pipelines to analyse and data.

    #single_cell #scrnaseq
  10. Lluís Revilla @Lluis_Revilla ·

    @hsorlie @JorisMeys @wviechtb To find the versions of packages that worked at a point in time in you can use the newly released cran.r-project.org/package=rang It might help to find the exact dependencies to make work.

    #cran #rang #rmediation