#sr24 — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #sr24, aggregated by home.social.
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new blog post: "Serious Request: the results" https://doi.org/10.59350/fjbv7-53d20
"The last week before the winter break Serious Request took place. We started an action around WikiPathways and we collected 877 euro for the MetaKids Foundation. In total there were 2612 actions, many of which brought in a lot more. We ended up in position 928."
replies to this post become blog comments.
#cheminformatics #bioinformatics #sr24 #metakids #SeriousRequest
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new blog post: "Serious Request: the results" https://doi.org/10.59350/fjbv7-53d20
"The last week before the winter break Serious Request took place. We started an action around WikiPathways and we collected 877 euro for the MetaKids Foundation. In total there were 2612 actions, many of which brought in a lot more. We ended up in position 928."
replies to this post become blog comments.
#cheminformatics #bioinformatics #sr24 #metakids #SeriousRequest
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new blog post: "Serious Request: the results" https://doi.org/10.59350/fjbv7-53d20
"The last week before the winter break Serious Request took place. We started an action around WikiPathways and we collected 877 euro for the MetaKids Foundation. In total there were 2612 actions, many of which brought in a lot more. We ended up in position 928."
replies to this post become blog comments.
#cheminformatics #bioinformatics #sr24 #metakids #SeriousRequest
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new blog post: "Serious Request: the results" https://doi.org/10.59350/fjbv7-53d20
"The last week before the winter break Serious Request took place. We started an action around WikiPathways and we collected 877 euro for the MetaKids Foundation. In total there were 2612 actions, many of which brought in a lot more. We ended up in position 928."
replies to this post become blog comments.
#cheminformatics #bioinformatics #sr24 #metakids #SeriousRequest
-
new blog post: "Serious Request: the results" https://doi.org/10.59350/fjbv7-53d20
"The last week before the winter break Serious Request took place. We started an action around WikiPathways and we collected 877 euro for the MetaKids Foundation. In total there were 2612 actions, many of which brought in a lot more. We ended up in position 928."
replies to this post become blog comments.
#cheminformatics #bioinformatics #sr24 #metakids #SeriousRequest
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Helaas voor mij (maar goed voor #seriousrequest) was de rij heel erg lang, dus ons actie geld inleveren zat er niet in. Doneren aan ons project kan nog steeds! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids #sr24 #metakids
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Helaas voor mij (maar goed voor #seriousrequest) was de rij heel erg lang, dus ons actie geld inleveren zat er niet in. Doneren aan ons project kan nog steeds! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids #sr24 #metakids
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Helaas voor mij (maar goed voor #seriousrequest) was de rij heel erg lang, dus ons actie geld inleveren zat er niet in. Doneren aan ons project kan nog steeds! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids #sr24 #metakids
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Helaas voor mij (maar goed voor #seriousrequest) was de rij heel erg lang, dus ons actie geld inleveren zat er niet in. Doneren aan ons project kan nog steeds! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids #sr24 #metakids
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Helaas voor mij (maar goed voor #seriousrequest) was de rij heel erg lang, dus ons actie geld inleveren zat er niet in. Doneren aan ons project kan nog steeds! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids #sr24 #metakids
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today I have been working on the reporting, and run the updated curation tests on other sets, e.g. for LIPID MAPS, and the full IEM collection. E.g. more reports in Markdown.
I also worked on the @wdscholia page of Prof. Clara van Karnebeek (orcid:0000-0003-3352-5631), who does not have a Wikipedia page yet (hint, hint). https://scholia.toolforge.org/author/Q56855884 Prof. Karnebeek is one of the people behind MetaKids and has an amazing track record in research into the metabolic disorders.
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today I have been working on the reporting, and run the updated curation tests on other sets, e.g. for LIPID MAPS, and the full IEM collection. E.g. more reports in Markdown.
I also worked on the @wdscholia page of Prof. Clara van Karnebeek (orcid:0000-0003-3352-5631), who does not have a Wikipedia page yet (hint, hint). https://scholia.toolforge.org/author/Q56855884 Prof. Karnebeek is one of the people behind MetaKids and has an amazing track record in research into the metabolic disorders.
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today I have been working on the reporting, and run the updated curation tests on other sets, e.g. for LIPID MAPS, and the full IEM collection. E.g. more reports in Markdown.
I also worked on the @wdscholia page of Prof. Clara van Karnebeek (orcid:0000-0003-3352-5631), who does not have a Wikipedia page yet (hint, hint). https://scholia.toolforge.org/author/Q56855884 Prof. Karnebeek is one of the people behind MetaKids and has an amazing track record in research into the metabolic disorders.
-
today I have been working on the reporting, and run the updated curation tests on other sets, e.g. for LIPID MAPS, and the full IEM collection. E.g. more reports in Markdown.
I also worked on the @wdscholia page of Prof. Clara van Karnebeek (orcid:0000-0003-3352-5631), who does not have a Wikipedia page yet (hint, hint). https://scholia.toolforge.org/author/Q56855884 Prof. Karnebeek is one of the people behind MetaKids and has an amazing track record in research into the metabolic disorders.
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today I have been working on the reporting, and run the updated curation tests on other sets, e.g. for LIPID MAPS, and the full IEM collection. E.g. more reports in Markdown.
I also worked on the @wdscholia page of Prof. Clara van Karnebeek (orcid:0000-0003-3352-5631), who does not have a Wikipedia page yet (hint, hint). https://scholia.toolforge.org/author/Q56855884 Prof. Karnebeek is one of the people behind MetaKids and has an amazing track record in research into the metabolic disorders.
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on one of the last days before the end of #sr24 on national radio, it is getting clear that #metakids is going to get a big donation. The idea that several hundreds of rare metabolic disorders become more treatable in the next 10 years resonates with people. Our own action has now raised 867 euro! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
Thanks to every who donated! Thank you Patrick Luja, thank you Martijn Molenaar!
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on one of the last days before the end of #sr24 on national radio, it is getting clear that #metakids is going to get a big donation. The idea that several hundreds of rare metabolic disorders become more treatable in the next 10 years resonates with people. Our own action has now raised 867 euro! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
Thanks to every who donated! Thank you Patrick Luja, thank you Martijn Molenaar!
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on one of the last days before the end of #sr24 on national radio, it is getting clear that #metakids is going to get a big donation. The idea that several hundreds of rare metabolic disorders become more treatable in the next 10 years resonates with people. Our own action has now raised 867 euro! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
Thanks to every who donated! Thank you Patrick Luja, thank you Martijn Molenaar!
-
on one of the last days before the end of #sr24 on national radio, it is getting clear that #metakids is going to get a big donation. The idea that several hundreds of rare metabolic disorders become more treatable in the next 10 years resonates with people. Our own action has now raised 867 euro! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
Thanks to every who donated! Thank you Patrick Luja, thank you Martijn Molenaar!
-
on one of the last days before the end of #sr24 on national radio, it is getting clear that #metakids is going to get a big donation. The idea that several hundreds of rare metabolic disorders become more treatable in the next 10 years resonates with people. Our own action has now raised 867 euro! https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
Thanks to every who donated! Thank you Patrick Luja, thank you Martijn Molenaar!
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find small errors here and there. Today 14 edits in 4 pathways: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges
1 euro = 1 minute of pathway curation
Help us, help MetaKids, help research into the 1900 deadly inherited metabolic disorders: https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
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find small errors here and there. Today 14 edits in 4 pathways: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges
1 euro = 1 minute of pathway curation
Help us, help MetaKids, help research into the 1900 deadly inherited metabolic disorders: https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
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find small errors here and there. Today 14 edits in 4 pathways: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges
1 euro = 1 minute of pathway curation
Help us, help MetaKids, help research into the 1900 deadly inherited metabolic disorders: https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
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find small errors here and there. Today 14 edits in 4 pathways: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges
1 euro = 1 minute of pathway curation
Help us, help MetaKids, help research into the 1900 deadly inherited metabolic disorders: https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
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find small errors here and there. Today 14 edits in 4 pathways: https://classic.wikipathways.org/index.php/Special:RecentPathwayChanges
1 euro = 1 minute of pathway curation
Help us, help MetaKids, help research into the 1900 deadly inherited metabolic disorders: https://www.npo3fm.nl/kominactie/acties/wikipathways-in-actie-voor-metakids
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another issue that can occur has nothing to do with Wikidata, but is incomplete FAIR-ification of the biological knowledge. We have a test for metabolites that are not involved in an interaction, and I was triggered by the curation test (one of the two screenshots), confirmed in the pathway: a Label needs to be a DataNode.
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another issue that can occur has nothing to do with Wikidata, but is incomplete FAIR-ification of the biological knowledge. We have a test for metabolites that are not involved in an interaction, and I was triggered by the curation test (one of the two screenshots), confirmed in the pathway: a Label needs to be a DataNode.
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another issue that can occur has nothing to do with Wikidata, but is incomplete FAIR-ification of the biological knowledge. We have a test for metabolites that are not involved in an interaction, and I was triggered by the curation test (one of the two screenshots), confirmed in the pathway: a Label needs to be a DataNode.
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another issue that can occur has nothing to do with Wikidata, but is incomplete FAIR-ification of the biological knowledge. We have a test for metabolites that are not involved in an interaction, and I was triggered by the curation test (one of the two screenshots), confirmed in the pathway: a Label needs to be a DataNode.
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another issue that can occur has nothing to do with Wikidata, but is incomplete FAIR-ification of the biological knowledge. We have a test for metabolites that are not involved in an interaction, and I was triggered by the curation test (one of the two screenshots), confirmed in the pathway: a Label needs to be a DataNode.
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the Wikidata page we find actually has the HMDB identifier, but deprecated: https://www.wikidata.org/wiki/Q2813820
The situation is that HMDB has a different stereoisomer on their page than ChEBI and Wikidata. The latter two have NHNODHRSCRALBF-NQNBQJKNSA-N but HMDB has NHNODHRSCRALBF-XSSXAYJJSA-N
The HMDB team will have to comment on this. When I look at the original pathway and KEGG, I think the ChEBI stated at HMDB is a match with the pathway, so I will fix this by using the ChEBI id 2/2
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the Wikidata page we find actually has the HMDB identifier, but deprecated: https://www.wikidata.org/wiki/Q2813820
The situation is that HMDB has a different stereoisomer on their page than ChEBI and Wikidata. The latter two have NHNODHRSCRALBF-NQNBQJKNSA-N but HMDB has NHNODHRSCRALBF-XSSXAYJJSA-N
The HMDB team will have to comment on this. When I look at the original pathway and KEGG, I think the ChEBI stated at HMDB is a match with the pathway, so I will fix this by using the ChEBI id 2/2
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the Wikidata page we find actually has the HMDB identifier, but deprecated: https://www.wikidata.org/wiki/Q2813820
The situation is that HMDB has a different stereoisomer on their page than ChEBI and Wikidata. The latter two have NHNODHRSCRALBF-NQNBQJKNSA-N but HMDB has NHNODHRSCRALBF-XSSXAYJJSA-N
The HMDB team will have to comment on this. When I look at the original pathway and KEGG, I think the ChEBI stated at HMDB is a match with the pathway, so I will fix this by using the ChEBI id 2/2
-
the Wikidata page we find actually has the HMDB identifier, but deprecated: https://www.wikidata.org/wiki/Q2813820
The situation is that HMDB has a different stereoisomer on their page than ChEBI and Wikidata. The latter two have NHNODHRSCRALBF-NQNBQJKNSA-N but HMDB has NHNODHRSCRALBF-XSSXAYJJSA-N
The HMDB team will have to comment on this. When I look at the original pathway and KEGG, I think the ChEBI stated at HMDB is a match with the pathway, so I will fix this by using the ChEBI id 2/2
-
the Wikidata page we find actually has the HMDB identifier, but deprecated: https://www.wikidata.org/wiki/Q2813820
The situation is that HMDB has a different stereoisomer on their page than ChEBI and Wikidata. The latter two have NHNODHRSCRALBF-NQNBQJKNSA-N but HMDB has NHNODHRSCRALBF-XSSXAYJJSA-N
The HMDB team will have to comment on this. When I look at the original pathway and KEGG, I think the ChEBI stated at HMDB is a match with the pathway, so I will fix this by using the ChEBI id 2/2
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for example, HMDB0001157 is not found in Wikidata. Looking it up via identifiers.org gives me the record: https://identifiers.org/hmdb/HMDB0001157 goes to https://hmdb.ca/metabolites/HMDB0001157
I confirm the chemical structure with ChEBI, which is listed in HMDB as http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15476
From that page, I take the InChIKey and look it with @wdscholia in @wikidata: https://scholia.toolforge.org/inchikey/NHNODHRSCRALBF-NQNBQJKNSA-N 1/
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for example, HMDB0001157 is not found in Wikidata. Looking it up via identifiers.org gives me the record: https://identifiers.org/hmdb/HMDB0001157 goes to https://hmdb.ca/metabolites/HMDB0001157
I confirm the chemical structure with ChEBI, which is listed in HMDB as http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15476
From that page, I take the InChIKey and look it with @wdscholia in @wikidata: https://scholia.toolforge.org/inchikey/NHNODHRSCRALBF-NQNBQJKNSA-N 1/
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for example, HMDB0001157 is not found in Wikidata. Looking it up via identifiers.org gives me the record: https://identifiers.org/hmdb/HMDB0001157 goes to https://hmdb.ca/metabolites/HMDB0001157
I confirm the chemical structure with ChEBI, which is listed in HMDB as http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15476
From that page, I take the InChIKey and look it with @wdscholia in @wikidata: https://scholia.toolforge.org/inchikey/NHNODHRSCRALBF-NQNBQJKNSA-N 1/
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for example, HMDB0001157 is not found in Wikidata. Looking it up via identifiers.org gives me the record: https://identifiers.org/hmdb/HMDB0001157 goes to https://hmdb.ca/metabolites/HMDB0001157
I confirm the chemical structure with ChEBI, which is listed in HMDB as http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15476
From that page, I take the InChIKey and look it with @wdscholia in @wikidata: https://scholia.toolforge.org/inchikey/NHNODHRSCRALBF-NQNBQJKNSA-N 1/
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for example, HMDB0001157 is not found in Wikidata. Looking it up via identifiers.org gives me the record: https://identifiers.org/hmdb/HMDB0001157 goes to https://hmdb.ca/metabolites/HMDB0001157
I confirm the chemical structure with ChEBI, which is listed in HMDB as http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15476
From that page, I take the InChIKey and look it with @wdscholia in @wikidata: https://scholia.toolforge.org/inchikey/NHNODHRSCRALBF-NQNBQJKNSA-N 1/
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For example, when @wikipathways has an metabolite identifier we do not have in @wikidata yet, this is a curation signal: did WikiPathways use the wrong identifier (that happens) or is the chemical compound not in Wikidata yet (that happens too). And sometimes something is wrong in Wikidata, like yesterday, when a polymer got accidentally linked to statements about the monomer
The two screenshots show automated curation reports for this for ChEBI and HMDB
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For example, when @wikipathways has an metabolite identifier we do not have in @wikidata yet, this is a curation signal: did WikiPathways use the wrong identifier (that happens) or is the chemical compound not in Wikidata yet (that happens too). And sometimes something is wrong in Wikidata, like yesterday, when a polymer got accidentally linked to statements about the monomer
The two screenshots show automated curation reports for this for ChEBI and HMDB
-
For example, when @wikipathways has an metabolite identifier we do not have in @wikidata yet, this is a curation signal: did WikiPathways use the wrong identifier (that happens) or is the chemical compound not in Wikidata yet (that happens too). And sometimes something is wrong in Wikidata, like yesterday, when a polymer got accidentally linked to statements about the monomer
The two screenshots show automated curation reports for this for ChEBI and HMDB
-
For example, when @wikipathways has an metabolite identifier we do not have in @wikidata yet, this is a curation signal: did WikiPathways use the wrong identifier (that happens) or is the chemical compound not in Wikidata yet (that happens too). And sometimes something is wrong in Wikidata, like yesterday, when a polymer got accidentally linked to statements about the monomer
The two screenshots show automated curation reports for this for ChEBI and HMDB
-
For example, when @wikipathways has an metabolite identifier we do not have in @wikidata yet, this is a curation signal: did WikiPathways use the wrong identifier (that happens) or is the chemical compound not in Wikidata yet (that happens too). And sometimes something is wrong in Wikidata, like yesterday, when a polymer got accidentally linked to statements about the monomer
The two screenshots show automated curation reports for this for ChEBI and HMDB