#immem — Public Fediverse posts

Registered too late for a poster for @ESCMID #IMMEM #IMMEMXIV but happy to discuss SciCommander with anyone interested 😊 See: https://livesys.se/posts/rewrite-of-scicommander-in-go/

Captures provenance of ad-hoc commands while skipping already computed steps - "The benefits of a pipeline tool without the pipeline tool".

End goal is to integrate provenance tracking across pipeline tools and the inevitable ad-hoc analyses done on the results of the pipeline runs.

Come see my poster at #IMMEM XIV Poster 151.

🔬 QualiBact – provides robust, data-driven QC thresholds for 304 bacterial species, built from >2.4M assemblies (AllTheBacteria + RefSeq).
⚙️ SpecCheck – an open-source command-line tool that applies these standards using existing outputs (QUAST, CheckM, ARIBA, Sylph) to generate clean, reproducible QC reports.

https://happykhan.github.io/qualibact/species/

https://github.com/happykhan/speccheck

We are on to day 3 of the #IMMEM conference in Porto after some great talks and the first poster session featuring the research that's being done by our community! Today we'll be covering environmental surveillance for #ID and #AMR and how best to share pathogen data. #IDsky #clinmicro

We are on to day 3 of the #IMMEM conference in Porto after some great talks and the first poster session featuring the research that's being done by our community! Today we'll be covering environmental surveillance for #ID and #AMR and how best to share pathogen data. #IDsky #clinmicro

We are on to day 3 of the #IMMEM conference in Porto after some great talks and the first poster session featuring the research that's being done by our community! Today we'll be covering environmental surveillance for #ID and #AMR and how best to share pathogen data. #IDsky #clinmicro

We are on to day 3 of the #IMMEM conference in Porto after some great talks and the first poster session featuring the research that's being done by our community! Today we'll be covering environmental surveillance for #ID and #AMR and how best to share pathogen data. #IDsky #clinmicro

We are on to day 3 of the #IMMEM conference in Porto after some great talks and the first poster session featuring the research that's being done by our community! Today we'll be covering environmental surveillance for #ID and #AMR and how best to share pathogen data. #IDsky #clinmicro

Day 1 of the #IMMEM XIV conference is in the books! Today we will cover implementation of genomics as it helps to support public health and inform on vaccine strategy as well as what’s new in bioinformatics. #MicrobialTyping #Genomics #clinmicro #IDSky

Day 1 of the #IMMEM XIV conference is in the books! Today we will cover implementation of genomics as it helps to support public health and inform on vaccine strategy as well as what’s new in bioinformatics. #MicrobialTyping #Genomics #clinmicro #IDSky

Day 1 of the #IMMEM XIV conference is in the books! Today we will cover implementation of genomics as it helps to support public health and inform on vaccine strategy as well as what’s new in bioinformatics. #MicrobialTyping #Genomics #clinmicro #IDSky

Day 1 of the #IMMEM XIV conference is in the books! Today we will cover implementation of genomics as it helps to support public health and inform on vaccine strategy as well as what’s new in bioinformatics. #MicrobialTyping #Genomics #clinmicro #IDSky

If you're at #IMMEM XIV . please come by and see "my" poster on vaccines.watch

Otherwise please read the preprint.

https://www.biorxiv.org/content/10.1101/2025.06.13.659488v1