#biohackrxiv — Public Fediverse posts

RE: https://fediscience.org/@biohackrxiv/116477505622903440

Today, we published the summary (as a #BioHackrXiv preprint) of the #SnakemakeHackathon2026 . All the accomplishments which contribute once more to improve the #Snakemake "ecosystem" for #reproducibleResearch & #Dataanalysis .

Many thanks to @egonw from BioHackrXiv for helping us!

RE: https://fediscience.org/@biohackrxiv/116477505622903440

Today, we published the summary (as a #BioHackrXiv preprint) of the #SnakemakeHackathon2026 . All the accomplishments which contribute once more to improve the #Snakemake "ecosystem" for #reproducibleResearch & #Dataanalysis .

Many thanks to @egonw from BioHackrXiv for helping us!

RE: https://fediscience.org/@biohackrxiv/116477505622903440

Today, we published the summary (as a #BioHackrXiv preprint) of the #SnakemakeHackathon2026 . All the accomplishments which contribute once more to improve the #Snakemake "ecosystem" for #reproducibleResearch & #Dataanalysis .

Many thanks to @egonw from BioHackrXiv for helping us!

RE: https://fediscience.org/@biohackrxiv/116477505622903440

Today, we published the summary (as a #BioHackrXiv preprint) of the #SnakemakeHackathon2026 . All the accomplishments which contribute once more to improve the #Snakemake "ecosystem" for #reproducibleResearch & #Dataanalysis .

Many thanks to @egonw from BioHackrXiv for helping us!

RE: https://fediscience.org/@biohackrxiv/116477505622903440

Today, we published the summary (as a #BioHackrXiv preprint) of the #SnakemakeHackathon2026 . All the accomplishments which contribute once more to improve the #Snakemake "ecosystem" for #reproducibleResearch & #Dataanalysis .

Many thanks to @egonw from BioHackrXiv for helping us!

our preview website has been revamped: https://preview.biohackrxiv.org/

#biohackrxiv #preprint #biohackathon

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;)

#publishing #cito #innovation #BioHackRXiv

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;)

#publishing #cito #innovation #BioHackRXiv

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;)

#publishing #cito #innovation #BioHackRXiv

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;)

#publishing #cito #innovation #BioHackRXiv

did you know you can follow new preprints in #BioHackRXiv?

RSS feed: https://index.biohackrxiv.org//feed.xml

JSON feed: https://index.biohackrxiv.org//feed.json

#preprint #biology

hi @OpenAlex, I was just looking at https://openalex.org/works/w3131971476 and do not see where it was published. It was published in #BioHackrXiv but do not see that anywhere. it's a preprint server, so, I was wondering how to get BioHackrXiv known to OpenAlex? cc @pjotrprins

the two most cited #BioHackrXiv papers are:

- "ELIXIR Software Management Plan for Life Sciences", by Renato Alves et al., 2021, https://doi.org/10.37044/osf.io/k8znb
- "Connecting molecular sequences to their voucher specimens", by Quentin Groom et al., 2021, https://doi.org/10.37044/osf.io/93qf4

congrats to #BioHackrXiv with their 100th preprint! https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

congrats to #BioHackrXiv with their 100th preprint! https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

congrats to #BioHackrXiv with their 100th preprint! https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

congrats to #BioHackrXiv with their 100th preprint! https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

congrats to #BioHackrXiv with their 100th preprint! https://osf.io/preprints/biohackrxiv/discover?sort=-dateCreated

#openscience #hackathon #BioHackEU24 #BioHackJP24 #BioHackGermany24

nice to see the first #BioHackRxiv 2025 paper with Citation Typing Ontology (CiTO) annotation: "Enhancing multi-omic analyses through a federated microbiome analysis service" https://scholia.toolforge.org/work/Q131798238 https://doi.org/10.37044/osf.io/3x274

BioHackRxiv: https://scholia.toolforge.org/venue/Q115450084
CiTO: https://scholia.toolforge.org/cito/
ELIXIR Europe: @elixir_europe

#bioinformatics #BioHackEU24 #ELIXIRMicrobialBiotechnology

thanks to #BioHackRxiv and @nanopub the number of CiTO-annotation of citations intentions continue to grow :) https://scholia.toolforge.org/cito/#articles-by-year

#publishing

two new #BioHackRXiv preprints with #CiTO annotations :) https://scholia.toolforge.org/cito/

(Actually, there is a third one, but this only uses cito:cites which I currently do not include in #Wikidata)

meanwhile, we see similar things at #BioHackrXiv but the uptake is better. Maybe because it is using Markdown and that is just a lot easier than Word files for authoring journal articles.

Next step here is getting the into into JATS.

#cito #publishing #preprint #FAIR

happy to see #BioHackrXiv reports and preprints are getting cited :) https://scholar.google.com/scholar?as_q=&as_epq=&as_oq=&as_eq=&as_occt=any&as_sauthors=&as_publication=BiohackrXiv&as_ylo=&as_yhi=&hl=en&as_sdt=0%2C5

These 44 are mostly from the Journal of Cheminformatics (21) and #BioHackRXiv (20). Two datasets are still the largest contributions. And I wonder how quick nanopublications as source will grow. For that see this post from last week: https://chem-bla-ics.linkedchemistry.info/2024/04/02/open-science-retreat-2.html 2/2

Full statistics by @wdscholia are found at https://scholia.toolforge.org/cito/

another three #BioHackrXiv reports from the @elixir_europe BioHackathon Europe 2023 got published with CiTO citation intent annotations! Thanks to the authors! https://doi.org/10.37044/osf.io/zxc8m https://doi.org/10.37044/osf.io/w8dsz and https://doi.org/10.37044/osf.io/qjbxc

Updated CiTO stats in @wdscholia: 1392 intent annotations for 1159 citations to 619 articles in 223 venues (journals, etc) by 448 articles in 212 venues. 44 articles with explicit intent annotations. 1/

@jerven @Andrawaag I understood only later last night and saw it this morning that last year it was already called BioHackathon SWAT4HCLS. I have asked this edition to be added to http://preview.biohackrxiv.org/ too

But it seems there were no reports last year? https://osf.io/preprints/biohackrxiv/discover?q=SWAT4HCLS

I will be around to answer #BioHackrXiv and CiTO questions

#SWAT4HCLS

happy to see the first two manuscript (two BioHackRxiv preprints/reports) have been published with explicit Citation Typing Ontology annotations https://scholia.toolforge.org/cito/ #wikidata #cito #fair #biohackrxiv #scholia

"The use of the Citation Typing Ontology in BioHackrXiv preprints" https://zenodo.org/doi/10.5281/zenodo.10072012 #biohackrxiv #cito