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#neuropixels — Public Fediverse posts

Live and recent posts from across the Fediverse tagged #neuropixels, aggregated by home.social.

  1. 🧠 New #preprint by Komi et al. (2025): Neural #manifolds that orchestrate walking and stopping. Using #Neuropixels recordings from the lumbar spinal cord of freely walking rats, they show that #locomotion arises from rotational #PopulationDynamics within a low-dimensional limit-cycle #manifold. When walking stops, the dynamics collapse into a postural manifold of stable fixed points, each encoding a distinct pose.

    🌍 doi.org/10.1101/2025.11.08.687

    #CompNeuro #NeuralDynamics #Attractor #Neuroscience

  2. 🧠 New #preprint by Komi et al. (2025): Neural #manifolds that orchestrate walking and stopping. Using #Neuropixels recordings from the lumbar spinal cord of freely walking rats, they show that #locomotion arises from rotational #PopulationDynamics within a low-dimensional limit-cycle #manifold. When walking stops, the dynamics collapse into a postural manifold of stable fixed points, each encoding a distinct pose.

    🌍 doi.org/10.1101/2025.11.08.687

    #CompNeuro #NeuralDynamics #Attractor #Neuroscience

  3. 🧠 New #preprint by Komi et al. (2025): Neural #manifolds that orchestrate walking and stopping. Using #Neuropixels recordings from the lumbar spinal cord of freely walking rats, they show that #locomotion arises from rotational #PopulationDynamics within a low-dimensional limit-cycle #manifold. When walking stops, the dynamics collapse into a postural manifold of stable fixed points, each encoding a distinct pose.

    🌍 doi.org/10.1101/2025.11.08.687

    #CompNeuro #NeuralDynamics #Attractor #Neuroscience

  4. 🧠 New #preprint by Komi et al. (2025): Neural #manifolds that orchestrate walking and stopping. Using #Neuropixels recordings from the lumbar spinal cord of freely walking rats, they show that #locomotion arises from rotational #PopulationDynamics within a low-dimensional limit-cycle #manifold. When walking stops, the dynamics collapse into a postural manifold of stable fixed points, each encoding a distinct pose.

    🌍 doi.org/10.1101/2025.11.08.687

    #CompNeuro #NeuralDynamics #Attractor #Neuroscience

  5. 🧠 New #preprint by Komi et al. (2025): Neural #manifolds that orchestrate walking and stopping. Using #Neuropixels recordings from the lumbar spinal cord of freely walking rats, they show that #locomotion arises from rotational #PopulationDynamics within a low-dimensional limit-cycle #manifold. When walking stops, the dynamics collapse into a postural manifold of stable fixed points, each encoding a distinct pose.

    🌍 doi.org/10.1101/2025.11.08.687

    #CompNeuro #NeuralDynamics #Attractor #Neuroscience

  6. 🧠 Using #Neuropixels recordings + deep-learning dynamics (FINDR), Luo et al. (2025) show that rat #decisionmaking switches from input-driven to autonomous network regimes mid-trial. After this nTc point, new sensory evidence no longer affects choice. Highlights fronto-striatal division of labor and constrains #AttractorModels.

    🌍 doi.org/10.1038/s41586-025-095

    #Neuroscience #CompNeuro #CogSci

  7. 🧠 New preprint by Kashefi et al. (2025): High-density #Neuropixels recordings in monkeys reveal compositional #NeuralDynamics in #MotorCortex. A posture subspace anchors fixed points, rotational dynamics link them to generate movement, and a uniform shift tracks trial state. Recurrent models show this geometry emerges only when controlling a full arm, suggesting posture-dependent control as a core principle:

    🌍 biorxiv.org/content/10.1101/20

    #Neuroscience #MotorControl #CompNeuro

  8. 🧠 New preprint by Kashefi et al. (2025): High-density #Neuropixels recordings in monkeys reveal compositional #NeuralDynamics in #MotorCortex. A posture subspace anchors fixed points, rotational dynamics link them to generate movement, and a uniform shift tracks trial state. Recurrent models show this geometry emerges only when controlling a full arm, suggesting posture-dependent control as a core principle:

    🌍 biorxiv.org/content/10.1101/20

    #Neuroscience #MotorControl #CompNeuro

  9. 🧠 New preprint by Kashefi et al. (2025): High-density #Neuropixels recordings in monkeys reveal compositional #NeuralDynamics in #MotorCortex. A posture subspace anchors fixed points, rotational dynamics link them to generate movement, and a uniform shift tracks trial state. Recurrent models show this geometry emerges only when controlling a full arm, suggesting posture-dependent control as a core principle:

    🌍 biorxiv.org/content/10.1101/20

    #Neuroscience #MotorControl #CompNeuro

  10. 🧠 New preprint by Kashefi et al. (2025): High-density #Neuropixels recordings in monkeys reveal compositional #NeuralDynamics in #MotorCortex. A posture subspace anchors fixed points, rotational dynamics link them to generate movement, and a uniform shift tracks trial state. Recurrent models show this geometry emerges only when controlling a full arm, suggesting posture-dependent control as a core principle:

    🌍 biorxiv.org/content/10.1101/20

    #Neuroscience #MotorControl #CompNeuro

  11. 🧠 New preprint by Kashefi et al. (2025): High-density #Neuropixels recordings in monkeys reveal compositional #NeuralDynamics in #MotorCortex. A posture subspace anchors fixed points, rotational dynamics link them to generate movement, and a uniform shift tracks trial state. Recurrent models show this geometry emerges only when controlling a full arm, suggesting posture-dependent control as a core principle:

    🌍 biorxiv.org/content/10.1101/20

    #Neuroscience #MotorControl #CompNeuro

  12. 🧠 New landmark study “A #brain-wide map of #NeuralActivity during complex #behaviour” by the #InternationalBrainLaboratory (Angelaki et al., 2025): >600,000 #neurons across 279 regions in 139 mice, unified across 12 labs with #Neuropixels probes.

    #DecisionMaking isn’t confined to single hubs but distributed across the brain, incl. #sensory, #motor & #reward areas, showing how #cognitive processes emerge from brain-wide #dynamics.

    🌍 doi.org/10.1038/s41586-025-092

    #Neuroscience 🧪

  13. The sound of cells in the brain just doesn’t get old! It’s how I fell in love with #neuroscience 🧠🧪👩🏻‍🔬

    Celebrating small victories - first #neuropixels recordings in the lab. Congrats to the team that made it happen!

  14. #PostdocJob from the #RuedigerLab at #UCL, London:

    "I’m excited to share that we have an opening for a postdoctoral position in my lab at University College London. This role is funded by the Wellcome Trust and offers a unique chance to join our team as we work to understand how cortical and subcortical visual circuits work together to turn visual signals into learned actions in mice.
    In this role, you will:
    • Design and perform innovative experiments in head-fixed and freely moving mice
    • Use advanced techniques like #Neuropixels recordings and two-photon calcium imaging to monitor and analyze brain activity
    • Collaborate closely with a diverse team of experimentalists and computational neuroscientists
    • Contribute to the preparation and dissemination of our research findings through publications and conference presentations

    This is a fantastic opportunity to make original contributions to our growing research group. If you have a strong background in in vivo physiology, mouse behavioral studies, and relevant data analysis - and you’re eager to expand your skills while playing a key role in our projects - I’d love to hear from you.

    For further details, including the full job description, please check out:
    Job Ad

    I look forward to the possibility of you joining our team.
    Sarah"

    #NeuroMice #Neuroscience #InVivoEphys

  15. #PostdocJob from the #RuedigerLab at #UCL, London:

    "I’m excited to share that we have an opening for a postdoctoral position in my lab at University College London. This role is funded by the Wellcome Trust and offers a unique chance to join our team as we work to understand how cortical and subcortical visual circuits work together to turn visual signals into learned actions in mice.
    In this role, you will:
    • Design and perform innovative experiments in head-fixed and freely moving mice
    • Use advanced techniques like #Neuropixels recordings and two-photon calcium imaging to monitor and analyze brain activity
    • Collaborate closely with a diverse team of experimentalists and computational neuroscientists
    • Contribute to the preparation and dissemination of our research findings through publications and conference presentations

    This is a fantastic opportunity to make original contributions to our growing research group. If you have a strong background in in vivo physiology, mouse behavioral studies, and relevant data analysis - and you’re eager to expand your skills while playing a key role in our projects - I’d love to hear from you.

    For further details, including the full job description, please check out:
    Job Ad

    I look forward to the possibility of you joining our team.
    Sarah"

    #NeuroMice #Neuroscience #InVivoEphys

  16. #PostdocJob from the #RuedigerLab at #UCL, London:

    "I’m excited to share that we have an opening for a postdoctoral position in my lab at University College London. This role is funded by the Wellcome Trust and offers a unique chance to join our team as we work to understand how cortical and subcortical visual circuits work together to turn visual signals into learned actions in mice.
    In this role, you will:
    • Design and perform innovative experiments in head-fixed and freely moving mice
    • Use advanced techniques like #Neuropixels recordings and two-photon calcium imaging to monitor and analyze brain activity
    • Collaborate closely with a diverse team of experimentalists and computational neuroscientists
    • Contribute to the preparation and dissemination of our research findings through publications and conference presentations

    This is a fantastic opportunity to make original contributions to our growing research group. If you have a strong background in in vivo physiology, mouse behavioral studies, and relevant data analysis - and you’re eager to expand your skills while playing a key role in our projects - I’d love to hear from you.

    For further details, including the full job description, please check out:
    Job Ad

    I look forward to the possibility of you joining our team.
    Sarah"

    #NeuroMice #Neuroscience #InVivoEphys

  17. #PostdocJob from the #RuedigerLab at #UCL, London:

    "I’m excited to share that we have an opening for a postdoctoral position in my lab at University College London. This role is funded by the Wellcome Trust and offers a unique chance to join our team as we work to understand how cortical and subcortical visual circuits work together to turn visual signals into learned actions in mice.
    In this role, you will:
    • Design and perform innovative experiments in head-fixed and freely moving mice
    • Use advanced techniques like #Neuropixels recordings and two-photon calcium imaging to monitor and analyze brain activity
    • Collaborate closely with a diverse team of experimentalists and computational neuroscientists
    • Contribute to the preparation and dissemination of our research findings through publications and conference presentations

    This is a fantastic opportunity to make original contributions to our growing research group. If you have a strong background in in vivo physiology, mouse behavioral studies, and relevant data analysis - and you’re eager to expand your skills while playing a key role in our projects - I’d love to hear from you.

    For further details, including the full job description, please check out:
    Job Ad

    I look forward to the possibility of you joining our team.
    Sarah"

    #NeuroMice #Neuroscience #InVivoEphys

  18. #PostdocJob from the #RuedigerLab at #UCL, London:

    "I’m excited to share that we have an opening for a postdoctoral position in my lab at University College London. This role is funded by the Wellcome Trust and offers a unique chance to join our team as we work to understand how cortical and subcortical visual circuits work together to turn visual signals into learned actions in mice.
    In this role, you will:
    • Design and perform innovative experiments in head-fixed and freely moving mice
    • Use advanced techniques like #Neuropixels recordings and two-photon calcium imaging to monitor and analyze brain activity
    • Collaborate closely with a diverse team of experimentalists and computational neuroscientists
    • Contribute to the preparation and dissemination of our research findings through publications and conference presentations

    This is a fantastic opportunity to make original contributions to our growing research group. If you have a strong background in in vivo physiology, mouse behavioral studies, and relevant data analysis - and you’re eager to expand your skills while playing a key role in our projects - I’d love to hear from you.

    For further details, including the full job description, please check out:
    Job Ad

    I look forward to the possibility of you joining our team.
    Sarah"

    #NeuroMice #Neuroscience #InVivoEphys

  19. #NeuroESC #JournalClub
    Reading Mental exploration of future choices during immobility theta oscillations

    If you've read it, will you let me know what you think?

    The authors look at #ThetaSequences in a working memory task in a radial arm maze. They find theta during immobility (makes sense, e.g. we saw that in our two-goals task). They also find that theta sequences might preferentially represent the next goal (also makes sense, e.g. Hippocampal theta sequences reflect current goals)!

    I have only done a quick reading so far, but am confused by a few points:

    Let me know what you think!

    #LeutgebLab #NeuroRat #Neuroscience #SpatialCognition

  20. #NeuroESC #JournalClub
    Reading Mental exploration of future choices during immobility theta oscillations

    If you've read it, will you let me know what you think?

    The authors look at #ThetaSequences in a working memory task in a radial arm maze. They find theta during immobility (makes sense, e.g. we saw that in our two-goals task). They also find that theta sequences might preferentially represent the next goal (also makes sense, e.g. Hippocampal theta sequences reflect current goals)!

    I have only done a quick reading so far, but am confused by a few points:

    Let me know what you think!

    #LeutgebLab #NeuroRat #Neuroscience #SpatialCognition

  21. #NeuroESC #JournalClub
    Reading Mental exploration of future choices during immobility theta oscillations

    If you've read it, will you let me know what you think?

    The authors look at #ThetaSequences in a working memory task in a radial arm maze. They find theta during immobility (makes sense, e.g. we saw that in our two-goals task). They also find that theta sequences might preferentially represent the next goal (also makes sense, e.g. Hippocampal theta sequences reflect current goals)!

    I have only done a quick reading so far, but am confused by a few points:

    Let me know what you think!

    #LeutgebLab #NeuroRat #Neuroscience #SpatialCognition

  22. #NeuroESC #JournalClub
    Reading Mental exploration of future choices during immobility theta oscillations

    If you've read it, will you let me know what you think?

    The authors look at #ThetaSequences in a working memory task in a radial arm maze. They find theta during immobility (makes sense, e.g. we saw that in our two-goals task). They also find that theta sequences might preferentially represent the next goal (also makes sense, e.g. Hippocampal theta sequences reflect current goals)!

    I have only done a quick reading so far, but am confused by a few points:

    Let me know what you think!

    #LeutgebLab #NeuroRat #Neuroscience #SpatialCognition

  23. #NeuroESC #JournalClub
    Reading Mental exploration of future choices during immobility theta oscillations

    If you've read it, will you let me know what you think?

    The authors look at #ThetaSequences in a working memory task in a radial arm maze. They find theta during immobility (makes sense, e.g. we saw that in our two-goals task). They also find that theta sequences might preferentially represent the next goal (also makes sense, e.g. Hippocampal theta sequences reflect current goals)!

    I have only done a quick reading so far, but am confused by a few points:

    Let me know what you think!

    #LeutgebLab #NeuroRat #Neuroscience #SpatialCognition

  24. Every time I heard that the vertebrate retina does not receive any feedback from the central brain I expressed scepticism, and was told repeatedly that no, feedback fibers running backwards along the optic nerve were never found.

    Now*, Sylvia Schröder et al. reports that:

    "Arousal modulates retinal output", Schröder et al. 2020 cell.com/neuron/fulltext/S0896

    Recordings with neuropixels probes on the optic tract of the mouse showed changes in retinal ganglion cell (RGC) activity (the output neurons of the retina whose axons make up the optical tract) in concordance with the arousal state of the mouse. They also measured activity of RGC axon boutons in the superior colliculus.

    What a fantastic piece of work.

    * for long values of "now".

    #neuroscience #neuropixels #vision #retina #mouse

  25. UnitMatch uses only the neurons’ spike waveform to track them across many days. This works really well with high-density probes such as #Neuropixels, where the spikes are visible across many recording sites.

  26. What do #Electrophysiologists who record raw data from many channels (#NeuroPixels, #Hyperdrives…) do for data backup and storage? I just bought 2 x 4Tb external drives and it looks like they won’t be enough (at all). Is there a cheap and reliable AND huge storage way to do this?

    #Ephys #NeuroMethods #DataManagement

  27. Hi Everyone.

    At the beginning of the year I received notice I've got my first funding as a new PI. It's for an ambitious project to look at how the main olfactory system in mice enables individualized social interactions. I wanted to hire a postdoc before, but now I really really want to hire a postdoc. If you know anyone who is at the right stage and might think the picture attached to this post looks cool, please can you share? There's a lot more to it than what's in the diagrams here.

    The job ad is in several places including here:
    sparksociety.org/resource-blog

    #neurojobs #neuroscience #imaging #miniscope #olfaction #olfactory #photometry #electrophysiology #neuropixels

  28. Hi Everyone.

    At the beginning of the year I received notice I've got my first funding as a new PI. It's for an ambitious project to look at how the main olfactory system in mice enables individualized social interactions. I wanted to hire a postdoc before, but now I really really want to hire a postdoc. If you know anyone who is at the right stage and might think the picture attached to this post looks cool, please can you share? There's a lot more to it than what's in the diagrams here.

    The job ad is in several places including here:
    sparksociety.org/resource-blog

    #neurojobs #neuroscience #imaging #miniscope #olfaction #olfactory #photometry #electrophysiology #neuropixels

  29. Hi Everyone.

    At the beginning of the year I received notice I've got my first funding as a new PI. It's for an ambitious project to look at how the main olfactory system in mice enables individualized social interactions. I wanted to hire a postdoc before, but now I really really want to hire a postdoc. If you know anyone who is at the right stage and might think the picture attached to this post looks cool, please can you share? There's a lot more to it than what's in the diagrams here.

    The job ad is in several places including here:
    sparksociety.org/resource-blog

    #neurojobs #neuroscience #imaging #miniscope #olfaction #olfactory #photometry #electrophysiology #neuropixels

  30. Hi Everyone.

    At the beginning of the year I received notice I've got my first funding as a new PI. It's for an ambitious project to look at how the main olfactory system in mice enables individualized social interactions. I wanted to hire a postdoc before, but now I really really want to hire a postdoc. If you know anyone who is at the right stage and might think the picture attached to this post looks cool, please can you share? There's a lot more to it than what's in the diagrams here.

    The job ad is in several places including here:
    sparksociety.org/resource-blog

    #neurojobs #neuroscience #imaging #miniscope #olfaction #olfactory #photometry #electrophysiology #neuropixels

  31. Hi Everyone.

    At the beginning of the year I received notice I've got my first funding as a new PI. It's for an ambitious project to look at how the main olfactory system in mice enables individualized social interactions. I wanted to hire a postdoc before, but now I really really want to hire a postdoc. If you know anyone who is at the right stage and might think the picture attached to this post looks cool, please can you share? There's a lot more to it than what's in the diagrams here.

    The job ad is in several places including here:
    sparksociety.org/resource-blog

    #neurojobs #neuroscience #imaging #miniscope #olfaction #olfactory #photometry #electrophysiology #neuropixels

  32. Update on tracking neurons across days in #Neuropixels recordings: @EnnyvBeest gave a nice talk on it, where she explains UnitMatch. It's a brief talk and it's available online: youtube.com/watch?v=4c_dgTZcBa

  33. The lectures of the 2023 UCL Neuropixels course are now on YouTube:
    youtube.com/playlist?list=PLfh

    The lectures are brief (typically 10-20 minutes) and packed with information. They are a great way to get an introduction to #Neuropixels, and to get up to speed on the latest developments.

    Thank you to @EnnyvBeest and Celian Bimbard for organizing a fantastic course, and to the lecturers for doing an amazing job!

    (more info on the course is at ucl.ac.uk/neuropixels/training).

  34. New preprint! "Tracking neurons across days with high-density probes", by @EnnyvBeest, Celian Bimbard and team.

    Chronic #Neuropixels probes can record from the same neurons for days, but require new approaches for tracking neurons.

    Enny and Celian developed UnitMatch, which operates after spike sorting and relies only on the neurons' average spike waveform.

    They then validated the results with functional responses – which were remarkably stable!

    biorxiv.org/content/10.1101/20 (1/2)

  35. Ultra-high density electrodes improve detection, yield, and cell type specificity of brain recordings biorxiv.org/content/10.1101/20 but #Neuropixels probes offer no brain stimulation; #BCI #NeuroTech

  36. @elduvelle_neuro this is great! I’m curious what you and other #Electrophysiologists think of dexamethasone treatment as postop care? It seems a more prevalent practice among those working with #Neuropixels but not amongst the #ephys community-at-large #EphysTip #neuroscience

  37. @susanleemburg @MatteoCarandini @manisha we encase rat #neuropixels implants in a Falcon tube. They're light, rat can't grab anything, and fully protect the hardware. Can share pics if you DM me.

  38. From what I can tell, folks that are successfully using #Neuropixels for either acute or chronic recordings are using the metal cap to attach to a dovetail holder. My question for #neuroscience : is there ever a reason to use the version *without* the metal cap?

  39. We are looking for a postdoc to to help us reveal how neural activity is structured in brainwide patterns to support behavior in mice. The postdoc will study the activity of large populations of neurons in the mouse brain using combined techniques such as #Neuropixels recordings and optogenetics, or rabies tracing and two-photon microscopy. It's an exciting opportunity for research at the interface of computational and experimental #neuroscience. ucl.ac.uk/cortexlab/positions. Deadline is 29 July.

  40. Delighted to announce the 2023 UCL Neuropixels Course.

    #Neuropixels probes are transforming #neuroscience. This free online course trains scientists to use them and process their output.

    Day 1 (17 October 2023) covers the basics. Day 2 (18 October 2023) does a deep dive into 4 hot topics: the 2.0 release, the latest Kilosort, chronic recording implants, and software to track the same neurons across days.

    For more info and to register:
    ucl.ac.uk/neuropixels/training

  41. “we identified a sparse subset of neurons in the primary visual cortex (V1) and higher visual areas that respond emergently to ICs [illusory contours]. We found that these highly selective "IC-encoders" mediate the neural representation of IC inference. Strikingly, selective activation of these neurons using two-photon holographic optogenetics was sufficient to recreate IC representation in the rest of the V1 network, in the absence of any visual stimulus.”

    From: “Recurrent pattern completion drives the neocortical representation of sensory inference” by Shin et al. 2023 biorxiv.org/content/10.1101/20

    #neuroscience #NeuroPixels #mouse #CerebralCortex

  42. “we identified a sparse subset of neurons in the primary visual cortex (V1) and higher visual areas that respond emergently to ICs [illusory contours]. We found that these highly selective "IC-encoders" mediate the neural representation of IC inference. Strikingly, selective activation of these neurons using two-photon holographic optogenetics was sufficient to recreate IC representation in the rest of the V1 network, in the absence of any visual stimulus.”

    From: “Recurrent pattern completion drives the neocortical representation of sensory inference” by Shin et al. 2023 biorxiv.org/content/10.1101/20

    #neuroscience #NeuroPixels #mouse #CerebralCortex

  43. “we identified a sparse subset of neurons in the primary visual cortex (V1) and higher visual areas that respond emergently to ICs [illusory contours]. We found that these highly selective "IC-encoders" mediate the neural representation of IC inference. Strikingly, selective activation of these neurons using two-photon holographic optogenetics was sufficient to recreate IC representation in the rest of the V1 network, in the absence of any visual stimulus.”

    From: “Recurrent pattern completion drives the neocortical representation of sensory inference” by Shin et al. 2023 biorxiv.org/content/10.1101/20

    #neuroscience #NeuroPixels #mouse #CerebralCortex