#commonwl — Public Fediverse posts

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

#CommonWL community members are participating in this week's DBCLS sponsored BioHackathon! #biohackjp

Some progress reports:

#CommonWL community members are participating in this week's DBCLS sponsored BioHackathon! #biohackjp

Some progress reports:

#CommonWL community members are participating in this week's DBCLS sponsored BioHackathon! #biohackjp

Some progress reports:

#CommonWL Conference Sessions 3 & 4 are successfully finished!

Thanks to our invited keynote speaker Ewe Deelman and all of our presenters and participants!

Session 2 of the CWL Conference 2024 starts in an hour!

Program: https://www.commonwl.org/conferences/2024/#onlinesession2Schedule

You can still sign up for free; we give you the connection information automatically: https://forms.gle/1q2q7t5vVVjUhGKR7

Can't attend Session 2, or did you miss Session 1? No worries, the videos are already online and linked from the program. Click through and you can also leave questions and comments for the presenters.

#CommonWL #SciWorkflows

CWL v1.2.1 has been ratified and released!
https://w3id.org/cwl/v1.2/

There are no new features nor behavior changes in CWL v1.2.1 as compared to CWL v1.2.0.

v1.2.1 fixes only typos, adds clarifications, and adds additional conformance tests.

Some changes to the schema defining CWL have been made to aid the auto-generation of libraries for the reading and writing of CWL documents.

https://github.com/common-workflow-language/cwl-v1.2/releases/tag/v1.2.1

#SciWorkflows #CommonWL

New to the #CommonWL gallery: MGX 2.0

https://www.commonwl.org/gallery/#mgx-2.0

"MGX uses an in-house developed workflow engine for read-level analysis of metagenomic sequence datasets. That workflow engine (Conveyor) keeps data in system memory and only writes it to files when e.g. external programs are invoked to process the data. Since this is rather impractical for metagenomic assembly, we added support for CWL and implemented corresponding analysis workflows."