#spatial_omics — Public Fediverse posts
Live and recent posts from across the Fediverse tagged #spatial_omics, aggregated by home.social.
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Working with Visium data deconvolved via cell2location. Need to calculate gene signature scores but cell type layers have different scales (Ductal: 0-37 vs Malignant: 0-228). Best approach? 1) Global score 2) Cell-type-specific 3) Weighted by abundance. Leaning toward option 3 but concerned about comparability across spots. Scale differences make normalization tricky. Anyone implemented signature scoring on cell2location results? #spatial_omics
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On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science -
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science -
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science -
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science -
On Day 1 of European Galaxy Days, Marisa Loach presented The Single Cell and Spatial Omics Community.
Read more: https://galaxyproject.org/community/sig/singlecell/@galaxyfreiburg
#community #EGD2025 #spatial_omics #galaxyproject #single_cell #eosc #fair #omics #open_science