#pathwayanalysis — Public Fediverse posts

Bioactivated Glucoraphanin Modulates Genes Involved in Necroptosis on Motor-Neuron-like Nsc-34: A Transcriptomic Study. https://doi.org/10.3390/antiox13091111 #Glucosinolates #Isothiocyanates #TranscriptomicAnalysis #PathwayAnalysis #OxidativeStress

We carried out an epigenome-wide association study using Illumina EPIC chips, and now would like to carry out Ingenuity Pathway Analysis (IPA), but are wondering what to do with CpGs that annotate in the EPIC manifest to two or more genes? Looks like some applying IPA annotate each CpG to the gene with the nearest TSS, while others applying IPA are rather vague regarding what they did. #epigenetics #PathwayAnalysis #Methylation #IlluminaEPIC

#scRNAseq #singlecell #pathwayAnalysis
Seems really easy to use, and return good results:

ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis - ScienceDirect

https://www.sciencedirect.com/science/article/pii/S1535947620600159?via%3Dihub

A Bioinformatic Approach Based on Systems Biology to Determine the Effects of SARS-CoV-2 Infection in Patients with Hypertrophic Cardiomyopathy
https://doi.org/10.1155%2F2022%2F5337380
#Cardiomyopathy #SARSCoV2 #PathwayAnalysis

Severity of COVID-19 patients with coexistence of asthma and vitamin D deficiency
https://doi.org/10.1016%2Fj.imu.2022.101116
#SARS-CoV-2 #PPI #Asthma #PathwayAnalysis